8GTN | pdb_00008gtn

Cryo-EM structure of the gasdermin B pore

External Resource: Annotation

Domain Annotation: ECOD Classification
Protein Family Annotation
Gene Ontology: Gene Product Annotation
InterPro: Protein Family Classification
Pharos: Disease Associations
Membrane Protein Annotation: OPM
Membrane Protein Annotation: mpstruc

Domain Annotation: ECOD Classification ECOD Database Homepage

Chains	Family Name	Domain Identifier	Architecture	Possible Homology	Homology	Topology	Family	Provenance Source (Version)
Z [auth AA]	UBA	e8gtnAA1	A: beta barrels	X: RNase A-like	H: RNase A-like	T: RNase A-like	F: UBA	ECOD (v294.2)
Y [auth Z]	UBA	e8gtnZ1	A: beta barrels	X: RNase A-like	H: RNase A-like	T: RNase A-like	F: UBA	ECOD (v294.2)
X [auth Y]	UBA	e8gtnY1	A: beta barrels	X: RNase A-like	H: RNase A-like	T: RNase A-like	F: UBA	ECOD (v294.2)
W [auth X]	UBA	e8gtnX1	A: beta barrels	X: RNase A-like	H: RNase A-like	T: RNase A-like	F: UBA	ECOD (v294.2)
V [auth W]	UBA	e8gtnW1	A: beta barrels	X: RNase A-like	H: RNase A-like	T: RNase A-like	F: UBA	ECOD (v294.2)
U [auth V]	UBA	e8gtnV1	A: beta barrels	X: RNase A-like	H: RNase A-like	T: RNase A-like	F: UBA	ECOD (v294.2)
T	UBA	e8gtnT1	A: beta barrels	X: RNase A-like	H: RNase A-like	T: RNase A-like	F: UBA	ECOD (v294.2)
S	UBA	e8gtnS1	A: beta barrels	X: RNase A-like	H: RNase A-like	T: RNase A-like	F: UBA	ECOD (v294.2)
R	UBA	e8gtnR1	A: beta barrels	X: RNase A-like	H: RNase A-like	T: RNase A-like	F: UBA	ECOD (v294.2)
Q	UBA	e8gtnQ1	A: beta barrels	X: RNase A-like	H: RNase A-like	T: RNase A-like	F: UBA	ECOD (v294.2)
P	UBA	e8gtnP1	A: beta barrels	X: RNase A-like	H: RNase A-like	T: RNase A-like	F: UBA	ECOD (v294.2)
O	UBA	e8gtnO1	A: beta barrels	X: RNase A-like	H: RNase A-like	T: RNase A-like	F: UBA	ECOD (v294.2)
N	UBA	e8gtnN1	A: beta barrels	X: RNase A-like	H: RNase A-like	T: RNase A-like	F: UBA	ECOD (v294.2)
M	UBA	e8gtnM1	A: beta barrels	X: RNase A-like	H: RNase A-like	T: RNase A-like	F: UBA	ECOD (v294.2)
L	UBA	e8gtnL1	A: beta barrels	X: RNase A-like	H: RNase A-like	T: RNase A-like	F: UBA	ECOD (v294.2)
K	UBA	e8gtnK1	A: beta barrels	X: RNase A-like	H: RNase A-like	T: RNase A-like	F: UBA	ECOD (v294.2)
J	UBA	e8gtnJ1	A: beta barrels	X: RNase A-like	H: RNase A-like	T: RNase A-like	F: UBA	ECOD (v294.2)
I	UBA	e8gtnI1	A: beta barrels	X: RNase A-like	H: RNase A-like	T: RNase A-like	F: UBA	ECOD (v294.2)
H	UBA	e8gtnH1	A: beta barrels	X: RNase A-like	H: RNase A-like	T: RNase A-like	F: UBA	ECOD (v294.2)
G	UBA	e8gtnG1	A: beta barrels	X: RNase A-like	H: RNase A-like	T: RNase A-like	F: UBA	ECOD (v294.2)
F	UBA	e8gtnF1	A: beta barrels	X: RNase A-like	H: RNase A-like	T: RNase A-like	F: UBA	ECOD (v294.2)
E	UBA	e8gtnE1	A: beta barrels	X: RNase A-like	H: RNase A-like	T: RNase A-like	F: UBA	ECOD (v294.2)
D	UBA	e8gtnD1	A: beta barrels	X: RNase A-like	H: RNase A-like	T: RNase A-like	F: UBA	ECOD (v294.2)
C	UBA	e8gtnC1	A: beta barrels	X: RNase A-like	H: RNase A-like	T: RNase A-like	F: UBA	ECOD (v294.2)
B	UBA	e8gtnB1	A: beta barrels	X: RNase A-like	H: RNase A-like	T: RNase A-like	F: UBA	ECOD (v294.2)
AA [auth BA]	UBA	e8gtnBA1	A: beta barrels	X: RNase A-like	H: RNase A-like	T: RNase A-like	F: UBA	ECOD (v294.2)
A	UBA	e8gtnA1	A: beta barrels	X: RNase A-like	H: RNase A-like	T: RNase A-like	F: UBA	ECOD (v294.2)

Protein Family Annotation Pfam Database Homepage

Chains	Accession	Name	Description	Comments	Source
A, AA [auth BA], B, C, D, A, AA [auth BA], B, C, D, E, F, G, H, I, J, K, L, M, N, O, P, Q, R, S, T, U [auth V], V [auth W], W [auth X], X [auth Y], Y [auth Z], Z [auth AA]	PF04598	Gasdermin pore forming domain (Gasdermin)	Gasdermin pore forming domain	The precise function of this protein is unknown. A deletion/insertion mutation is associated with an autosomal dominant non-syndromic hearing impairment form [1]. In addition, this protein has also been found to contribute to acquired etoposide resis ...	The precise function of this protein is unknown. A deletion/insertion mutation is associated with an autosomal dominant non-syndromic hearing impairment form [1]. In addition, this protein has also been found to contribute to acquired etoposide resistance in melanoma cells [2]. This family also includes the gasdermin protein [3]	Domain

Gene Ontology: Gene Product Annotation Gene Ontology Database Homepage

Chains	Polymer	Molecular Function	Biological Process	Cellular Component
A, AA [auth BA], B, C, D, A, AA [auth BA], B, C, D, E, F, G, H, I, J, K, L, M, N, O, P, Q, R, S, T, U [auth V], V [auth W], W [auth X], X [auth Y], Y [auth Z], Z [auth AA]	Isoform 4 of Gasdermin-B	ion binding binding phosphatidylinositol-4,5-bisphosphate binding anion binding phosphatidylinositol bisphosphate binding phospholipid binding lipid binding phosphatidylinositol phosphate binding small molecule binding wide pore channel activity passive transmembrane transporter activity channel activity transporter activity transmembrane transporter activity ion binding binding phosphatidylinositol-4,5-bisphosphate binding anion binding phosphatidylinositol bisphosphate binding phospholipid binding lipid binding phosphatidylinositol phosphate binding small molecule binding wide pore channel activity passive transmembrane transporter activity channel activity transporter activity transmembrane transporter activity phosphatidylinositol-4-phosphate binding phosphatidylglycerol binding cardiolipin binding modified amino acid binding phosphatidylserine binding	response to stimulus defense response response to stress pyroptotic cell death pyroptotic inflammatory response cytotoxic T cell pyroptotic cell death cellular process inflammatory response cell death programmed cell death biological process involved in interspecies interaction between organisms disruption of cell in another organism disruption of anatomical structure in another organism killing of cells of another organism response to stimulus defense response response to stress pyroptotic cell death pyroptotic inflammatory response cytotoxic T cell pyroptotic cell death cellular process inflammatory response cell death programmed cell death biological process involved in interspecies interaction between organisms disruption of cell in another organism disruption of anatomical structure in another organism killing of cells of another organism cell killing response to other organism response to external stimulus defense response to Gram-negative bacterium response to biotic stimulus defense response to bacterium response to bacterium response to external biotic stimulus	cell periphery cellular anatomical structure plasma membrane membrane intracellular anatomical structure cytoplasm

InterPro: Protein Family Classification InterPro Database Homepage

Chains	Accession	Name	Type
A, AA [auth BA], B, C, D, A, AA [auth BA], B, C, D, E, F, G, H, I, J, K, L, M, N, O, P, Q, R, S, T, U [auth V], V [auth W], W [auth X], X [auth Y], Y [auth Z], Z [auth AA]	IPR040460	Gasdermin, pore forming domain	Domain
A, AA [auth BA], B, C, D, A, AA [auth BA], B, C, D, E, F, G, H, I, J, K, L, M, N, O, P, Q, R, S, T, U [auth V], V [auth W], W [auth X], X [auth Y], Y [auth Z], Z [auth AA]	IPR041263	Gasdermin, PUB domain	Domain
A, AA [auth BA], B, C, D, A, AA [auth BA], B, C, D, E, F, G, H, I, J, K, L, M, N, O, P, Q, R, S, T, U [auth V], V [auth W], W [auth X], X [auth Y], Y [auth Z], Z [auth AA]	IPR007677	Gasdermin	Family

Pharos: Disease Associations Pharos Homepage Annotation

Chains	Drug Target	Associated Disease
A, AA [auth BA], B, C, D, A, AA [auth BA], B, C, D, E, F, G, H, I, J, K, L, M, N, O, P, Q, R, S, T, U [auth V], V [auth W], W [auth X], X [auth Y], Y [auth Z], Z [auth AA]	: Q8TAX9	ulcerative colitis Crohn disease asthma pancreatic intraductal papillary-mucinous neoplasm with low grade dysplasia psoriasis systemic sclerosis acute lymphoblastic leukemia atrial fibrillation large cell medulloblastoma malignant ependymoma malignant pancreatic neoplasm pancreatic intraductal papillary-mucinous carcinoma pilocytic astrocytoma rheumatoid arthritis allergic rhinitis ulcerative colitis Crohn disease asthma pancreatic intraductal papillary-mucinous neoplasm with low grade dysplasia psoriasis systemic sclerosis acute lymphoblastic leukemia atrial fibrillation large cell medulloblastoma malignant ependymoma malignant pancreatic neoplasm pancreatic intraductal papillary-mucinous carcinoma pilocytic astrocytoma rheumatoid arthritis allergic rhinitis atypical teratoid rhabdoid tumor esophageal adenocarcinoma lung adenocarcinoma malignant glioma osteosarcoma pancreatic intraductal papillary-mucinous neoplasm primary biliary cholangitis systemic lupus erythematosus cervical cancer glioblastoma lung carcinoma Malignant neoplasm of breast pancreatic ductal adenocarcinoma

Membrane Protein Annotation: OPM OPM Database Homepage

Chains	External Link	Type	Class	Superfamily	Family
A, AA [auth BA], B, C, D A, AA [auth BA], B, C, D, E, F, G, H, I, J, K, L, M, N, O, P, Q, R, S, T, U [auth V], V [auth W], W [auth X], X [auth Y], Y [auth Z], Z [auth AA]	OPM	Transmembrane	Beta-barrel transmembrane	Gasdermin	Gasdermin

Membrane Protein Annotation: mpstruc mpstruc Database Homepage

Chains	Resource Link	Group	Subgroup	Protein
A, AA [auth BA], B, C, D A, AA [auth BA], B, C, D, E, F, G, H, I, J, K, L, M, N, O, P, Q, R, S, T, U [auth V], V [auth W], W [auth X], X [auth Y], Y [auth Z], Z [auth AA]	mpstruc	TRANSMEMBRANE PROTEINS: BETA-BARREL	Gasdermin (GSDM) Family	Gasdermin GSDMB pore:

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RCSB PDB Core Operations are funded by the U.S. National Science Foundation (DBI-2321666), the US Department of Energy (DE-SC0019749), and the National Cancer Institute, National Institute of Allergy and Infectious Diseases, and National Institute of General Medical Sciences of the National Institutes of Health under grant R01GM157729. RCSB PDB uses resources of the National Energy Research Scientific Computing Center (NERSC), a Department of Energy User Facility.