8GTJ
Crystal structure of IpaH7.8-LRR and GSDMB isoform-4 complex
Domain Annotation: ECOD Classification ECOD Database Homepage
Chains | Family Name | Domain Identifier | Architecture | Possible Homology | Homology | Topology | Family | Provenance Source (Version) |
---|---|---|---|---|---|---|---|---|
A | F_UNCLASSIFIED | e8gtjA2 | A: beta complex topology | X: Membrane attack complex/perforin (MACPF) and cholesterol-dependent cytolysin (CDC) domains (From Topology) | H: Membrane attack complex/perforin (MACPF) and cholesterol-dependent cytolysin (CDC) domains (From Topology) | T: Membrane attack complex/perforin (MACPF) and cholesterol-dependent cytolysin (CDC) domains | F: F_UNCLASSIFIED | ECOD (1.6) |
A | F_UNCLASSIFIED | e8gtjA1 | A: a+b two layers | X: R3H domain-like | H: PUB domain (From Topology) | T: PUB domain | F: F_UNCLASSIFIED | ECOD (1.6) |
C | F_UNCLASSIFIED | e8gtjC1 | A: beta complex topology | X: Membrane attack complex/perforin (MACPF) and cholesterol-dependent cytolysin (CDC) domains (From Topology) | H: Membrane attack complex/perforin (MACPF) and cholesterol-dependent cytolysin (CDC) domains (From Topology) | T: Membrane attack complex/perforin (MACPF) and cholesterol-dependent cytolysin (CDC) domains | F: F_UNCLASSIFIED | ECOD (1.6) |
C | F_UNCLASSIFIED | e8gtjC2 | A: a+b two layers | X: R3H domain-like | H: PUB domain (From Topology) | T: PUB domain | F: F_UNCLASSIFIED | ECOD (1.6) |
B | F_UNCLASSIFIED | e8gtjB1 | A: beta duplicates or obligate multimers | X: Single-stranded right-handed beta-helix | H: Leucine-rich repeats (From Topology) | T: Leucine-rich repeats | F: F_UNCLASSIFIED | ECOD (1.6) |
D | F_UNCLASSIFIED | e8gtjD1 | A: beta duplicates or obligate multimers | X: Single-stranded right-handed beta-helix | H: Leucine-rich repeats (From Topology) | T: Leucine-rich repeats | F: F_UNCLASSIFIED | ECOD (1.6) |
Protein Family Annotation Pfam Database Homepage
Chains | Accession | Name | Description | Comments | Source |
---|---|---|---|---|---|
PF17708 | Gasdermin PUB domain (Gasdermin_C) | Gasdermin PUB domain | The precise function of this protein is unknown. A deletion/insertion mutation is associated with an autosomal dominant non-syndromic hearing impairment form [1]. In addition, this protein has also been found to contribute to acquired etoposide resis ... | Domain | |
PF04598 | Gasdermin pore forming domain (Gasdermin) | Gasdermin pore forming domain | The precise function of this protein is unknown. A deletion/insertion mutation is associated with an autosomal dominant non-syndromic hearing impairment form [1]. In addition, this protein has also been found to contribute to acquired etoposide resis ... | Domain | |
Gene Ontology: Gene Product Annotation Gene Ontology Database Homepage
InterPro: Protein Family Classification InterPro Database Homepage
Chains | Accession | Name | Type |
---|---|---|---|
IPR040460 | Gasdermin, pore forming domain | Domain | |
IPR041263 | Gasdermin, PUB domain | Domain | |
IPR051071 | Leucine-rich repeat-containing bacterial E3 ubiquitin ligases | Family | |
IPR032675 | Leucine-rich repeat domain superfamily | Homologous Superfamily | |
IPR001611 | Leucine-rich repeat | Repeat | |
IPR032674 | LRR-containing bacterial E3 ligase, N-terminal | Domain | |
IPR029487 | Novel E3 ligase domain | Domain |
Pharos: Disease Associations Pharos Homepage Annotation
Membrane Protein Annotation: mpstruc mpstruc Database Homepage
Chains | Resource Link | Group | Subgroup | Protein |
---|---|---|---|---|
mpstruc | TRANSMEMBRANE PROTEINS: BETA-BARREL | Gasdermin (GSDM) Family | Gasdermin GSDMB pore: |