8G88
Human Oct4 bound to nucleosome with human nMatn1 sequence
Domain Annotation: SCOP2 Classification SCOP2 Database Homepage
Chains | Type | Family Name | Domain Identifier | Family Identifier | Provenance Source (Version) |
---|---|---|---|---|---|
A | SCOP2B Superfamily | Core histone-like | 8041272 | 3001387 | SCOP2B (2021-05-27) |
E | SCOP2B Superfamily | Core histone-like | 8041272 | 3001387 | SCOP2B (2021-05-27) |
B | SCOP2B Superfamily | Core histone-like | 8042439 | 3001387 | SCOP2B (2021-05-27) |
F | SCOP2B Superfamily | Core histone-like | 8042439 | 3001387 | SCOP2B (2021-05-27) |
C | SCOP2B Superfamily | Core histone-like | 8067126 | 3001387 | SCOP2B (2021-05-27) |
G | SCOP2B Superfamily | Core histone-like | 8067126 | 3001387 | SCOP2B (2021-05-27) |
D | SCOP2B Superfamily | Core histone-like | 8041279 | 3001387 | SCOP2B (2021-05-27) |
H | SCOP2B Superfamily | Core histone-like | 8041279 | 3001387 | SCOP2B (2021-05-27) |
K [auth X] | SCOP2B Superfamily | lambda C1 repressor DNA-binding domain-like | 8094725 | 3000119 | SCOP2B (2021-05-27) |
Domain Annotation: ECOD Classification ECOD Database Homepage
Chains | Family Name | Domain Identifier | Architecture | Possible Homology | Homology | Topology | Family | Provenance Source (Version) |
---|---|---|---|---|---|---|---|---|
A | PF00125 | e8g88A1 | A: alpha arrays | X: Histone-like | H: Histone-related | T: Histone | F: PF00125 | ECOD (1.6) |
E | PF00125 | e8g88E1 | A: alpha arrays | X: Histone-like | H: Histone-related | T: Histone | F: PF00125 | ECOD (1.6) |
B | PF15511 | e8g88B1 | A: alpha arrays | X: Histone-like | H: Histone-related | T: Histone | F: PF15511 | ECOD (1.6) |
F | PF15511 | e8g88F1 | A: alpha arrays | X: Histone-like | H: Histone-related | T: Histone | F: PF15511 | ECOD (1.6) |
C | PF00125,PF16211 | e8g88C1 | A: alpha arrays | X: Histone-like | H: Histone-related | T: Histone | F: PF00125,PF16211 | ECOD (1.6) |
G | PF00125,PF16211 | e8g88G1 | A: alpha arrays | X: Histone-like | H: Histone-related | T: Histone | F: PF00125,PF16211 | ECOD (1.6) |
D | PF00125 | e8g88D1 | A: alpha arrays | X: Histone-like | H: Histone-related | T: Histone | F: PF00125 | ECOD (1.6) |
H | PF00125 | e8g88H1 | A: alpha arrays | X: Histone-like | H: Histone-related | T: Histone | F: PF00125 | ECOD (1.6) |
K [auth X] | PF00046 | e8g88X2 | A: alpha arrays | X: HTH | H: HTH | T: tri-helical | F: PF00046 | ECOD (1.6) |
K [auth X] | PF00157 | e8g88X1 | A: alpha arrays | X: HTH | H: HTH | T: tetra-helical, lambda repressor-like | F: PF00157 | ECOD (1.6) |
Protein Family Annotation Pfam Database Homepage
Chains | Accession | Name | Description | Comments | Source |
---|---|---|---|---|---|
PF15511 | Centromere kinetochore component CENP-T histone fold (CENP-T_C) | Centromere kinetochore component CENP-T histone fold | CENP-T is a family of vertebral kinetochore proteins that associates directly with CENP-W. The N-terminus of CENP-T proteins interacts directly with the Ndc80 complex in the outer kinetochore. Importantly, the CENP-T-W complex does not directly asso ... | Domain | |
PF16211 | C-terminus of histone H2A (Histone_H2A_C) | C-terminus of histone H2A | - | Family | |
K [auth X] | PF00157 | Pou domain - N-terminal to homeobox domain (Pou) | Pou domain - N-terminal to homeobox domain | - | Domain |