8G7S

Structure of the Escherichia coli 70S ribosome in complex with P-site tRNAIle(LAU) bound to the cognate AUA codon (Structure IV)


Domain Annotation: SCOP2 Classification SCOP2 Database Homepage

ChainsTypeFamily Name Domain Identifier Family IdentifierProvenance Source (Version)
TA [auth Y]SCOP2B SuperfamilyRibosomal L27 protein-like8096338 3000539 SCOP2B (2021-05-27)
P [auth p]SCOP2B SuperfamilyRibosomal protein S168097402 3000680 SCOP2B (2021-05-27)
U [auth u]SCOP2B SuperfamilyRibosomal protein S218093436 3002159 SCOP2B (2021-05-27)
AA [auth C]SCOP2B SuperfamilyTranslation proteins SH3-like KOW motif containing domain8035393 3000334 SCOP2B (2021-05-27)
AA [auth C]SCOP2B SuperfamilyNucleic acid-binding proteins8035394 3000135 SCOP2B (2021-05-27)
D [auth d]SCOP2B SuperfamilyAlpha-L RNA-binding motif8083400 3001473 SCOP2B (2021-05-27)
PA [auth U]SCOP2B SuperfamilyRibosomal protein L228096336 3001078 SCOP2B (2021-05-27)
XA [auth 3]SCOP2B SuperfamilyL28p-like8032740 3001966 SCOP2B (2021-05-27)
BB [auth 7]SCOP2B SuperfamilyL35p-like8035388 3000790 SCOP2B (2021-05-27)
CB [auth 8]SCOP2B SuperfamilyRibosomal protein L368093434 3001346 SCOP2B (2021-05-27)
G [auth g]SCOP2B SuperfamilyRibosomal protein S78077979 3000799 SCOP2B (2021-05-27)

Protein Family Annotation Pfam Database Homepage

ChainsAccessionNameDescriptionCommentsSource
Z [auth B]PF00318Ribosomal protein S2 (Ribosomal_S2)Ribosomal protein S2- Family
AA [auth C]PF03947Ribosomal Proteins L2, C-terminal domain (Ribosomal_L2_C)Ribosomal Proteins L2, C-terminal domain- Domain
AA [auth C]PF00181Ribosomal Proteins L2, RNA binding domain (Ribosomal_L2)Ribosomal Proteins L2, RNA binding domain- Domain
AA [auth C]PF07650KH domain (KH_2)KH domain- Domain
AA [auth C]PF00189Ribosomal protein S3, C-terminal domain (Ribosomal_S3_C)Ribosomal protein S3, C-terminal domainThis family contains a central domain Pfam:PF00013, hence the amino and carboxyl terminal domains are stored separately. This is a minimal carboxyl-terminal domain. Some are much longer.Domain
BA [auth D]PF00163Ribosomal protein S4/S9 N-terminal domain (Ribosomal_S4)Ribosomal protein S4/S9 N-terminal domain- Family
BA [auth D]PF01479S4 domain (S4)S4 domainThe S4 domain is a small domain consisting of 60-65 amino acid residues that was detected in the bacterial ribosomal protein S4, eukaryotic ribosomal S9, two families of pseudouridine synthases, a novel family of predicted RNA methylases, a yeast pro ...The S4 domain is a small domain consisting of 60-65 amino acid residues that was detected in the bacterial ribosomal protein S4, eukaryotic ribosomal S9, two families of pseudouridine synthases, a novel family of predicted RNA methylases, a yeast protein containing a pseudouridine synthetase and a deaminase domain, bacterial tyrosyl-tRNA synthetases, and a number of uncharacterized, small proteins that may be involved in translation regulation [1]. The S4 domain probably mediates binding to RNA.
Domain
CA [auth E]PF03719Ribosomal protein S5, C-terminal domain (Ribosomal_S5_C)Ribosomal protein S5, C-terminal domain- Domain
CA [auth E]PF00573Ribosomal protein L4/L1 family (Ribosomal_L4)Ribosomal protein L4/L1 family- Family
CA [auth E]PF00333Ribosomal protein S5, N-terminal domain (Ribosomal_S5)Ribosomal protein S5, N-terminal domain- Domain
DA [auth F]PF01250Ribosomal protein S6 (Ribosomal_S6)Ribosomal protein S6- Domain
EA [auth G]PF00347Ribosomal protein L6 (Ribosomal_L6)Ribosomal protein L6- Domain
GA [auth L]PF00164Ribosomal protein S12/S23 (Ribosom_S12_S23)Ribosomal protein S12/S23- Family
HA [auth M]PF00238Ribosomal protein L14p/L23e (Ribosomal_L14)Ribosomal protein L14p/L23e- Domain
HA [auth M]PF00416Ribosomal protein S13/S18 (Ribosomal_S13)Ribosomal protein S13/S18- Family
KA [auth P]PF00886Ribosomal protein S16 (Ribosomal_S16)Ribosomal protein S16- Family
NA [auth S]PF00453Ribosomal protein L20 (Ribosomal_L20)Ribosomal protein L20- Family
OA [auth T]PF01649Ribosomal protein S20 (Ribosomal_S20p)Ribosomal protein S20- Family
PA [auth U]PF00237Ribosomal protein L22p/L17e (Ribosomal_L22)Ribosomal protein L22p/L17eThis family includes L22 from prokaryotes and chloroplasts and L17 from eukaryotes.Domain
PA [auth U]PF01165Ribosomal protein S21 (Ribosomal_S21)Ribosomal protein S21- Family
UA [auth Z]PF00830Ribosomal L28 family (Ribosomal_L28)Ribosomal L28 family- Family
XA [auth 3]PF01197Ribosomal protein L31 (Ribosomal_L31)Ribosomal protein L31- Family
AB [auth 6]PF00468Ribosomal protein L34 (Ribosomal_L34)Ribosomal protein L34- Family
BB [auth 7]PF01632Ribosomal protein L35 (Ribosomal_L35p)Ribosomal protein L35- Family
CB [auth 8]PF00444Ribosomal protein L36 (Ribosomal_L36)Ribosomal protein L36- Domain

Gene Ontology: Gene Product Annotation Gene Ontology Database Homepage

ChainsPolymerMolecular FunctionBiological ProcessCellular Component
Q [auth q]30S ribosomal protein S17---
QA [auth V]50S ribosomal protein L23---
RA [auth W]50S ribosomal protein L24---
TA [auth Y]50S ribosomal protein L27
WA [auth 2]50S ribosomal protein L30---
A [auth a]16S Ribosomal RNA---
J [auth j]30S ribosomal protein S10---
K [auth k]30S ribosomal protein S11
L [auth l]30S ribosomal protein S12
M [auth m]30S ribosomal protein S13
N [auth n]30S ribosomal protein S14---
O [auth o]30S ribosomal protein S15---
P [auth p]30S ribosomal protein S16
R [auth r]30S ribosomal protein S18
S [auth s]30S ribosomal protein S19---
B [auth b]30S ribosomal protein S2
T [auth t]30S ribosomal protein S20
U [auth u]30S ribosomal protein S21
V [auth x],
W [auth y]
Isoleucine tRNA---
X [auth v]I-F mRNA---
Y [auth A]23S Ribosomal RNA---
Z [auth B]5S Ribosomal RNA---
AA [auth C]50S ribosomal protein L2
BA [auth D]50S ribosomal protein L3---
CA [auth E]50S ribosomal protein L4
DA [auth F]50S ribosomal protein L5---
C [auth c]30S ribosomal protein S3
EA [auth G]50S ribosomal protein L6
FA [auth H]50S ribosomal protein L9---
GA [auth L]50S ribosomal protein L13---
HA [auth M]50S ribosomal protein L14
IA [auth N]50S ribosomal protein L15---
JA [auth O]50S ribosomal protein L16---
KA [auth P]50S ribosomal protein L17---
LA [auth Q]50S ribosomal protein L18---
MA [auth R]50S ribosomal protein L19---
NA [auth S]50S ribosomal protein L20
D [auth d]30S ribosomal protein S4
OA [auth T]Ribosomal protein L21---
PA [auth U]50S ribosomal protein L22
SA [auth X]50S ribosomal protein L25---
UA [auth Z]50S ribosomal protein L28
VA [auth 1]50S ribosomal protein L29---
XA [auth 3]50S ribosomal protein L31
E [auth e]30S ribosomal protein S5
YA [auth 4]50S ribosomal protein L32---
ZA [auth 5]50S ribosomal protein L33---
AB [auth 6]50S ribosomal protein L34
BB [auth 7]50S ribosomal protein L35
CB [auth 8]50S ribosomal protein L36
F [auth f]30S ribosomal protein S6
G [auth g]30S ribosomal protein S7
H [auth h]30S ribosomal protein S8---
I [auth i]30S ribosomal protein S9---

InterPro: Protein Family Classification InterPro Database Homepage

ChainsAccessionNameType
TA [auth Y]IPR001684Large ribosomal subunit protein bL27Family
TA [auth Y]IPR018261Large ribosomal subunit protein bL27, conserved siteConserved Site
K [auth k]IPR001971Small ribosomal subunit protein uS11Family
K [auth k]IPR019981Small ribosomal subunit protein uS11, bacterial-typeFamily
K [auth k]IPR036967Small ribosomal subunit protein uS11 superfamilyHomologous Superfamily
K [auth k]IPR018102Small ribosomal subunit protein uS11, conserved siteConserved Site
L [auth l]IPR006032Small ribosomal subunit protein uS12Family
L [auth l]IPR012340Nucleic acid-binding, OB-foldHomologous Superfamily
L [auth l]IPR005679Ribosomal protein uS12, bacterial-typeFamily
M [auth m]IPR027437Small ribosomal subunit protein uS13, C-terminalHomologous Superfamily
M [auth m]IPR001892Small ribosomal subunit protein uS13Family
M [auth m]IPR018269Small ribosomal subunit protein uS13, conserved siteConserved Site
M [auth m]IPR010979Small ribosomal subunit protein uS13-like, H2THHomologous Superfamily
M [auth m]IPR019980Small ribosomal subunit protein uS13, bacterial-typeFamily
P [auth p]IPR023803Small ribosomal subunit protein bS16 domain superfamilyHomologous Superfamily
P [auth p]IPR000307Small ribosomal subunit protein bS16Family
P [auth p]IPR020592Small ribosomal subunit protein bS16, conserved siteConserved Site
R [auth r]IPR001648Small ribosomal subunit protein bS18Family
R [auth r]IPR018275Small ribosomal subunit protein bS18, conserved siteConserved Site
R [auth r]IPR036870Small ribosomal subunit protein bS18 superfamilyHomologous Superfamily
B [auth b]IPR005706Small ribosomal subunit protein uS2, bacteria/mitochondria/plastidFamily
B [auth b]IPR023591Small ribosomal subunit protein uS2, flavodoxin-like domain superfamilyHomologous Superfamily
B [auth b]IPR018130Small ribosomal subunit protein uS2, conserved siteConserved Site
B [auth b]IPR001865Small ribosomal subunit protein uS2Family
T [auth t]IPR036510Small ribosomal subunit protein bS20 superfamilyHomologous Superfamily
T [auth t]IPR002583Small ribosomal subunit protein bS20Family
U [auth u]IPR038380Small ribosomal subunit protein bS21 superfamilyHomologous Superfamily
U [auth u]IPR018278Small ribosomal subunit protein bS21, conserved siteConserved Site
U [auth u]IPR001911Small ribosomal subunit protein bS21Family
AA [auth C]IPR022669Large ribosomal subunit protein uL2, C-terminalDomain
AA [auth C]IPR014722Large ribosomal subunit protein uL2, domain 2Homologous Superfamily
AA [auth C]IPR008991Translation protein SH3-like domain superfamilyHomologous Superfamily
AA [auth C]IPR022671Large ribosomal subunit protein uL2, conserved siteConserved Site
AA [auth C]IPR005880Large ribosomal subunit protein uL2, bacterial/organellar-typeFamily
AA [auth C]IPR012340Nucleic acid-binding, OB-foldHomologous Superfamily
AA [auth C]IPR022666Large ribosomal subunit protein uL2, RNA-binding domainDomain
AA [auth C]IPR014726Large ribosomal subunit protein uL2, domain 3Homologous Superfamily
AA [auth C]IPR002171Large ribosomal subunit protein uL2Family
CA [auth E]IPR013005Large ribosomal subunit protein uL4-likeFamily
CA [auth E]IPR002136Large ribosomal subunit protein uL4Family
CA [auth E]IPR023574Large ribosomal subunit protein uL4 domain superfamilyHomologous Superfamily
C [auth c]IPR001351Small ribosomal subunit protein uS3, C-terminalDomain
C [auth c]IPR009019K homology domain superfamily, prokaryotic typeHomologous Superfamily
C [auth c]IPR004087K Homology domainDomain
C [auth c]IPR004044K Homology domain, type 2Domain
C [auth c]IPR015946K homology domain-like, alpha/betaHomologous Superfamily
C [auth c]IPR036419Ribosomal protein S3, C-terminal domain superfamilyHomologous Superfamily
C [auth c]IPR005704Small ribosomal subunit protein uS3, bacterial-typeFamily
C [auth c]IPR018280Small ribosomal subunit protein uS3, conserved siteConserved Site
EA [auth G]IPR020040Large ribosomal subunit protein uL6, alpha-beta domainDomain
EA [auth G]IPR036789Large ribosomal subunit protein uL6-like, alpha-beta domain superfamilyHomologous Superfamily
EA [auth G]IPR000702Large ribosomal subunit protein uL6-likeFamily
EA [auth G]IPR019906Large ribosomal subunit protein uL6, bacterial-typeFamily
EA [auth G]IPR002358Large ribosomal subunit protein uL6, conserved siteConserved Site
HA [auth M]IPR005745Large ribosomal subunit protein uL14, bacterial-typeFamily
HA [auth M]IPR036853Large ribosomal subunit protein uL14 superfamilyHomologous Superfamily
HA [auth M]IPR000218Large ribosomal subunit protein uL14Family
HA [auth M]IPR019972Large ribosomal subunit protein uL14, conserved siteConserved Site
NA [auth S]IPR035566Ribosomal protein bL20, C-terminalHomologous Superfamily
NA [auth S]IPR005813Large ribosomal subunit protein bL20Family
D [auth d]IPR002942RNA-binding S4 domainDomain
D [auth d]IPR005709Small ribosomal subunit protein uS4, bacterial-typeFamily
D [auth d]IPR022801Small ribosomal subunit protein uS4Family
D [auth d]IPR018079Small ribosomal subunit protein uS4, conserved siteConserved Site
D [auth d]IPR001912Small ribosomal subunit protein uS4, N-terminalDomain
D [auth d]IPR036986RNA-binding S4 domain superfamilyHomologous Superfamily
PA [auth U]IPR047867Large ribosomal subunit protein uL22, bacterial/organelle-typeFamily
PA [auth U]IPR036394Ribosomal protein uL22 superfamilyHomologous Superfamily
PA [auth U]IPR001063Large ribosomal subunit protein uL22Family
PA [auth U]IPR018260Large ribosomal subunit protein uL22, conserved siteConserved Site
PA [auth U]IPR005727Large ribosomal subunit protein uL22, bacterial/chloroplast-typeFamily
UA [auth Z]IPR001383Large ribosomal subunit protein bL28, bacterial-typeFamily
UA [auth Z]IPR037147Large ribosomal subunit protein bL28 superfamilyHomologous Superfamily
UA [auth Z]IPR026569Large ribosomal subunit protein bL28Family
UA [auth Z]IPR034704Large ribosomal subunit protein bL28/bL31-like superfamilyHomologous Superfamily
XA [auth 3]IPR002150Large ribosomal subunit protein bL31 type A/BFamily
XA [auth 3]IPR027491Large ribosomal subunit protein bL31 type AFamily
XA [auth 3]IPR034704Large ribosomal subunit protein bL28/bL31-like superfamilyHomologous Superfamily
XA [auth 3]IPR042105Large ribosomal subunit protein bL31 superfamilyHomologous Superfamily
E [auth e]IPR000851Small ribosomal subunit protein uS5Family
E [auth e]IPR005324Small ribosomal subunit protein uS5, C-terminalDomain
E [auth e]IPR013810Small ribosomal subunit protein uS5, N-terminalDomain
E [auth e]IPR020568Ribosomal protein uS5 domain 2-type superfamilyHomologous Superfamily
E [auth e]IPR018192Small ribosomal subunit protein uS5, N-terminal, conserved siteConserved Site
E [auth e]IPR005712Small ribosomal subunit protein uS5, bacterial-typeFamily
E [auth e]IPR014721Small ribosomal subunit protein uS5 domain 2-type fold, subgroupHomologous Superfamily
AB [auth 6]IPR020939Large ribosomal subunit protein bL34, conserved siteConserved Site
AB [auth 6]IPR000271Large ribosomal subunit protein bL34Family
BB [auth 7]IPR021137Large ribosomal subunit protein bL35-likeFamily
BB [auth 7]IPR018265Large ribosomal subunit protein bL35, conserved siteConserved Site
BB [auth 7]IPR001706Large ribosomal subunit protein bL35Family
BB [auth 7]IPR037229Large ribosomal subunit protein bL35 superfamilyHomologous Superfamily
CB [auth 8]IPR000473Large ribosomal subunit protein bL36Family
CB [auth 8]IPR035977Large ribosomal subunit protein bL36 superfamilyHomologous Superfamily
F [auth f]IPR020815Small ribosomal subunit protein bS6, conserved siteConserved Site
F [auth f]IPR000529Small ribosomal subunit protein bS6Family
F [auth f]IPR020814Small ribosomal subunit protein bS6, plastid/chloroplastFamily
F [auth f]IPR035980Small ribosomal subunit protein bS6 superfamilyHomologous Superfamily
F [auth f]IPR014717Translation elongation factor EF1B/small ribosomal subunit protein bS6Homologous Superfamily
G [auth g]IPR020606Small ribosomal subunit protein uS7, conserved siteConserved Site
G [auth g]IPR036823Small ribosomal subunit protein uS7 domain superfamilyHomologous Superfamily
G [auth g]IPR000235Small ribosomal subunit protein uS7Family
G [auth g]IPR005717Small ribosomal subunit protein uS7, bacterial/organellar-typeFamily
G [auth g]IPR023798Small ribosomal subunit protein uS7 domainDomain

Protein Modification Annotation

Modified Residue(s)
ChainResidue(s)Description
A [auth a]2MG Parent Component: G

A [auth a]4OC Parent Component: C

A [auth a]5MC Parent Component: C

A [auth a]G7M Parent Component: G

A [auth a]MA6 Parent Component: A

A [auth a]PSU Parent Component: U

A [auth a]UR3 Parent Component: U

K [auth k]IAS
L [auth l]D2T Parent Component: ASP

V [auth x],
W [auth y]
3AU Parent Component: U

V [auth x],
W [auth y]
4SU Parent Component: U

V [auth x],
W [auth y]
5MU Parent Component: U

V [auth x],
W [auth y]
G7M Parent Component: G

V [auth x],
W [auth y]
H2U Parent Component: U

V [auth x],
W [auth y]
M3X Parent Component: C

V [auth x],
W [auth y]
OMG Parent Component: G

V [auth x],
W [auth y]
PSU Parent Component: U

V [auth x],
W [auth y]
T6A Parent Component: A

Y [auth A]1MG Parent Component: G

Y [auth A]2MA Parent Component: A

Y [auth A]2MG Parent Component: G

Y [auth A]3TD Parent Component: U

Y [auth A]5MC Parent Component: C

Y [auth A]5MU Parent Component: U

Y [auth A]6MZ Parent Component: A

Y [auth A]G7M Parent Component: G

Y [auth A]H2U Parent Component: U

Y [auth A]OMC Parent Component: C

Y [auth A]OMG Parent Component: G

Y [auth A]OMU Parent Component: U

Y [auth A]PSU Parent Component: U

BA [auth D]MEQ Parent Component: GLN

RESIDAA0071

PSI-MOD :  N5-methyl-L-glutamine MOD:00080
JA [auth O]4D4 Parent Component: ARG

RESIDAA0071

JA [auth O]MS6 RESIDAA0071