8FXR

Structure of neck with portal vertex of capsid of Agrobacterium phage Milano

External Resource: Annotation

Protein Family Annotation
Gene Ontology: Gene Product Annotation
InterPro: Protein Family Classification

Protein Family Annotation Pfam Database Homepage

Chains	Accession	Name	Description	Comments	Source
AC [auth e3], AD [auth 53], BC [auth f3], BD [auth 63], CC [auth g3], AC [auth e3], AD [auth 53], BC [auth f3], BD [auth 63], CC [auth g3], CD [auth 73], DC [auth h3], DD [auth 83], EC [auth i3], ED [auth 93], FB [auth J3], FC [auth j3], FD [auth 03], GB [auth K3], GC [auth k3], GD [auth A3], HB [auth L3], HC [auth l3], HD [auth B3], IB [auth M3], IC [auth m3], ID [auth C3], JB [auth N3], JC [auth n3], JD [auth D3], KB [auth O3], KC [auth o3], KD [auth E3], LB [auth P3], LC [auth p3], LD [auth F3], MB [auth Q3], MC [auth q3], MD [auth G3], NB [auth R3], NC [auth r3], OB [auth S3], OC [auth s3], PB [auth T3], PC [auth t3], QB [auth U3], QC [auth u3], RB [auth V3], RC [auth v3], SB [auth W3], SC [auth w3], TB [auth X3], TC [auth x3], UB [auth Y3], UC [auth y3], VB [auth Z3], VC [auth z3], WB [auth a3], WC [auth 13], XB [auth b3], XC [auth 23], YB [auth c3], YC [auth 33], ZB [auth d3], ZC [auth 43]	PF17963	Bacterial Ig domain (Big_9)	Bacterial Ig domain	This entry represents a wide variety of bacterial Ig domains.	Domain
AG [auth AI], BG [auth AJ], CG [auth AK], DG [auth AL], SF [auth AA], AG [auth AI], BG [auth AJ], CG [auth AK], DG [auth AL], SF [auth AA], TF [auth AB], UF [auth AC], VF [auth AD], WF [auth AE], XF [auth AF], YF [auth AG], ZF [auth AH]	PF04860	Phage portal protein (Phage_portal)	Phage portal protein	-	Family

Gene Ontology: Gene Product Annotation Gene Ontology Database Homepage

Chains	Polymer	Molecular Function	Biological Process	Cellular Component
A [auth c], AF [auth b7], B [auth d], BF [auth d7], C [auth e], A [auth c], AF [auth b7], B [auth d], BF [auth d7], C [auth e], CF [auth e7], D [auth f], E [auth g], GE [auth a6], HE [auth b6], IE [auth d6], JE [auth e6], MA [auth a2], NA [auth b2], ND [auth a5], OA [auth d2], OD [auth b5], PA [auth e2], PD [auth d5], QD [auth e5], T [auth a1], U [auth b1], V [auth d1], W [auth e1], ZE [auth a7]	Linking protein 2, gp128	-	-	-
GG [auth AU], JG [auth AZ], MG [auth AV], OG [auth Aa], RG [auth AY], GG [auth AU], JG [auth AZ], MG [auth AV], OG [auth Aa], RG [auth AY], TG [auth Ab]	Tail-tube, gp21	-	-	-
F [auth a], G [auth b], H [auth l], I [auth n], J [auth o], F [auth a], G [auth b], H [auth l], I [auth n], J [auth o], K [auth p], L [auth q], M [auth h], N [auth i], O [auth j], P [auth k], Q [auth m]	Neck 1 protein, gp14	-	-	-
EG [auth AM], IG [auth AP], KG [auth AN], PG [auth AO], R [auth H], EG [auth AM], IG [auth AP], KG [auth AN], PG [auth AO], R [auth H], S [auth I]	Neck 2 protein, gp15	-	-	-
DF [auth f7], KE [auth f6], QA [auth f2], RD [auth f5], X [auth f1]	Linking protein 1, gp16	-	-	-
AA [auth k1], AB [auth r2], BE [auth r5], DA [auth n1], EA [auth o1], AA [auth k1], AB [auth r2], BE [auth r5], DA [auth n1], EA [auth o1], EF [auth g7], FF [auth h7], GF [auth k7], HA [auth r1], JF [auth n7], KF [auth o7], LE [auth g6], ME [auth h6], NE [auth k6], NF [auth r7], QE [auth n6], RA [auth g2], RE [auth o6], SA [auth h2], SD [auth g5], TA [auth k2], TD [auth h5], UD [auth k5], UE [auth r6], WA [auth n2], XA [auth o2], XD [auth n5], Y [auth g1], YD [auth o5], Z [auth h1]	Major capsid protein, gp9	-	-	-
AE [auth q5], BA [auth l1], BB [auth s2], CA [auth m1], CB [auth t2], AE [auth q5], BA [auth l1], BB [auth s2], CA [auth m1], CB [auth t2], CE [auth s5], DB [auth u2], DE [auth t5], EB [auth v2], EE [auth u5], FA [auth p1], FE [auth v5], GA [auth q1], HF [auth l7], IA [auth s1], IF [auth m7], JA [auth t1], KA [auth u1], LA [auth v1], LF [auth p7], MF [auth q7], OE [auth l6], OF [auth s7], PE [auth m6], PF [auth t7], QF [auth u7], RF [auth v7], SE [auth p6], TE [auth q6], UA [auth l2], VA [auth m2], VD [auth l5], VE [auth s6], WD [auth m5], WE [auth t6], XE [auth u6], YA [auth p2], YE [auth v6], ZA [auth q2], ZD [auth p5]	Minor capsid protein, gp10	-	-	-
AC [auth e3], AD [auth 53], BC [auth f3], BD [auth 63], CC [auth g3], AC [auth e3], AD [auth 53], BC [auth f3], BD [auth 63], CC [auth g3], CD [auth 73], DC [auth h3], DD [auth 83], EC [auth i3], ED [auth 93], FB [auth J3], FC [auth j3], FD [auth 03], GB [auth K3], GC [auth k3], GD [auth A3], HB [auth L3], HC [auth l3], HD [auth B3], IB [auth M3], IC [auth m3], ID [auth C3], JB [auth N3], JC [auth n3], JD [auth D3], KB [auth O3], KC [auth o3], KD [auth E3], LB [auth P3], LC [auth p3], LD [auth F3], MB [auth Q3], MC [auth q3], MD [auth G3], NB [auth R3], NC [auth r3], OB [auth S3], OC [auth s3], PB [auth T3], PC [auth t3], QB [auth U3], QC [auth u3], RB [auth V3], RC [auth v3], SB [auth W3], SC [auth w3], TB [auth X3], TC [auth x3], UB [auth Y3], UC [auth y3], VB [auth Z3], VC [auth z3], WB [auth a3], WC [auth 13], XB [auth b3], XC [auth 23], YB [auth c3], YC [auth 33], ZB [auth d3], ZC [auth 43]	Collar sheath protein, gp13	-	-	-
AG [auth AI], BG [auth AJ], CG [auth AK], DG [auth AL], SF [auth AA], AG [auth AI], BG [auth AJ], CG [auth AK], DG [auth AL], SF [auth AA], TF [auth AB], UF [auth AC], VF [auth AD], WF [auth AE], XF [auth AF], YF [auth AG], ZF [auth AH]	Portal protein, gp7	-	biological process involved in interspecies interaction between organisms symbiont entry into host cell viral process symbiont entry into host viral life cycle biological process involved in interaction with host biological process involved in symbiotic interaction	-
FG [auth AQ], HG [auth AR], LG [auth AS], NG [auth AT], QG [auth AW], FG [auth AQ], HG [auth AR], LG [auth AS], NG [auth AT], QG [auth AW], SG [auth AX]	Tail-terminator protein, gp18	-	-	-

InterPro: Protein Family Classification InterPro Database Homepage

Chains	Accession	Name	Type
EG [auth AM], IG [auth AP], KG [auth AN], PG [auth AO], R [auth H], EG [auth AM], IG [auth AP], KG [auth AN], PG [auth AO], R [auth H], S [auth I]	IPR038666	Bacteriophage SPP1, head-tail adaptor superfamily	Homologous Superfamily
AA [auth k1], AB [auth r2], BE [auth r5], DA [auth n1], EA [auth o1], AA [auth k1], AB [auth r2], BE [auth r5], DA [auth n1], EA [auth o1], EF [auth g7], FF [auth h7], GF [auth k7], HA [auth r1], JF [auth n7], KF [auth o7], LE [auth g6], ME [auth h6], NE [auth k6], NF [auth r7], QE [auth n6], RA [auth g2], RE [auth o6], SA [auth h2], SD [auth g5], TA [auth k2], TD [auth h5], UD [auth k5], UE [auth r6], WA [auth n2], XA [auth o2], XD [auth n5], Y [auth g1], YD [auth o5], Z [auth h1]	IPR024455	Phage capsid	Family
AG [auth AI], BG [auth AJ], CG [auth AK], DG [auth AL], SF [auth AA], AG [auth AI], BG [auth AJ], CG [auth AK], DG [auth AL], SF [auth AA], TF [auth AB], UF [auth AC], VF [auth AD], WF [auth AE], XF [auth AF], YF [auth AG], ZF [auth AH]	IPR006944	Bacteriophage/Gene transfer agent portal protein	Family

RCSB PDB Core Operations are funded by the U.S. National Science Foundation (DBI-2321666), the US Department of Energy (DE-SC0019749), and the National Cancer Institute, National Institute of Allergy and Infectious Diseases, and National Institute of General Medical Sciences of the National Institutes of Health under grant R01GM133198.