40S subunit of the Giardia lamblia 80S ribosome
Domain Annotation: SCOP2 Classification SCOP2 Database Homepage
| Chains | Type | Family Name | Domain Identifier | Family Identifier | Provenance Source (Version) |
|---|---|---|---|---|---|
| G [auth F] | SCOP2B Superfamily | Ribosomal protein S7 | 8107208 | 3000799 | SCOP2B (2022-06-29) |
| C [auth B] | SCOP2B Superfamily | Ribosomal S3Ae-like | 8107200 | 3002166 | SCOP2B (2022-06-29) |
| CA [auth c] | SCOP2B Superfamily | Nucleic acid-binding proteins | 8107166 | 3000135 | SCOP2B (2022-06-29) |
| AA [auth a] | SCOP2B Superfamily | Glucocorticoid receptor-like (DNA-binding domain) | 8107194 | 3000068 | SCOP2B (2022-06-29) |
| Y | SCOP2B Superfamily | Ribosomal proteins S24e, L23 and L15e | 8107170 | 3000210 | SCOP2B (2022-06-29) |
| W | SCOP2B Superfamily | Ribosomal protein S8 | 8107238 | 3000709 | SCOP2B (2022-06-29) |
| V | SCOP2B Superfamily | Glucocorticoid receptor-like (DNA-binding domain) | 8107164 | 3000068 | SCOP2B (2022-06-29) |
| U | SCOP2B Superfamily | Ribosomal protein S10 | 8107168 | 3001336 | SCOP2B (2022-06-29) |
| B [auth A] | SCOP2B Superfamily | SIS domain/Ribosomal protein S2-like | 8107178 | 3001397 | SCOP2B (2022-06-29) |
| S | SCOP2B Superfamily | S13-like H2TH domain | 8107204 | 3000053 | SCOP2B (2022-06-29) |
| Q | SCOP2B Superfamily | Ribosomal protein S5 domain 2-like | 8107184 | 3000100 | SCOP2B (2022-06-29) |
| O | SCOP2B Superfamily | Translational machinery components | 8107240 | 3000571 | SCOP2B (2022-06-29) |
Domain Annotation: ECOD Classification ECOD Database Homepage
| Chains | Family Name | Domain Identifier | Architecture | Possible Homology | Homology | Topology | Family | Provenance Source (Version) |
|---|---|---|---|---|---|---|---|---|
| I [auth H] | Thiol_cytolysin | e8fvyH01 | A: alpha arrays | X: Rossmann-like | H: Rossmann-related | T: FAD/NAD(P)-binding domain | F: Thiol_cytolysin | ECOD (v295.2) |
| H [auth G] | VHL | e8fvyG1 | A: alpha arrays | X: Hypothetical protein YqbG-like | H: Hypothetical protein YqbG-like | T: alpha/beta-Hydrolases | F: VHL | ECOD (v295.2) |
| G [auth F] | VHL | e8fvyF1 | A: alpha arrays | X: Hypothetical protein YqbG-like | H: Hypothetical protein YqbG-like | T: alpha/beta-Hydrolases | F: VHL | ECOD (v295.2) |
| F [auth E] | VHL | e8fvyE1 | A: alpha arrays | X: Hypothetical protein YqbG-like | H: Hypothetical protein YqbG-like | T: alpha/beta-Hydrolases | F: VHL | ECOD (v295.2) |
| E [auth D] | VHL | e8fvyD1 | A: alpha arrays | X: Hypothetical protein YqbG-like | H: Hypothetical protein YqbG-like | T: alpha/beta-Hydrolases | F: VHL | ECOD (v295.2) |
| D [auth C] | VHL | e8fvyC1 | A: alpha arrays | X: Hypothetical protein YqbG-like | H: Hypothetical protein YqbG-like | T: alpha/beta-Hydrolases | F: VHL | ECOD (v295.2) |
| HA [auth e] | VHL | e8fvye1 | A: alpha arrays | X: Hypothetical protein YqbG-like | H: Hypothetical protein YqbG-like | T: alpha/beta-Hydrolases | F: VHL | ECOD (v295.2) |
| GA [auth M] | Thiol_cytolysin | e8fvyM01 | A: alpha arrays | X: Rossmann-like | H: Rossmann-related | T: FAD/NAD(P)-binding domain | F: Thiol_cytolysin | ECOD (v295.2) |
| EA [auth f] | Thiol_cytolysin | e8fvyf01 | A: alpha arrays | X: Rossmann-like | H: Rossmann-related | T: FAD/NAD(P)-binding domain | F: Thiol_cytolysin | ECOD (v295.2) |
| DA [auth d] | VHL | e8fvyd1 | A: alpha arrays | X: Hypothetical protein YqbG-like | H: Hypothetical protein YqbG-like | T: alpha/beta-Hydrolases | F: VHL | ECOD (v295.2) |
| C [auth B] | VHL | e8fvyB1 | A: alpha arrays | X: Hypothetical protein YqbG-like | H: Hypothetical protein YqbG-like | T: alpha/beta-Hydrolases | F: VHL | ECOD (v295.2) |
| CA [auth c] | VHL | e8fvyc1 | A: alpha arrays | X: Hypothetical protein YqbG-like | H: Hypothetical protein YqbG-like | T: alpha/beta-Hydrolases | F: VHL | ECOD (v295.2) |
| BA [auth b] | VHL | e8fvyb1 | A: alpha arrays | X: Hypothetical protein YqbG-like | H: Hypothetical protein YqbG-like | T: alpha/beta-Hydrolases | F: VHL | ECOD (v295.2) |
| AA [auth a] | VHL | e8fvya1 | A: alpha arrays | X: Hypothetical protein YqbG-like | H: Hypothetical protein YqbG-like | T: alpha/beta-Hydrolases | F: VHL | ECOD (v295.2) |
| Z | VHL | e8fvyZ1 | A: alpha arrays | X: Hypothetical protein YqbG-like | H: Hypothetical protein YqbG-like | T: alpha/beta-Hydrolases | F: VHL | ECOD (v295.2) |
| Y | VHL | e8fvyY1 | A: alpha arrays | X: Hypothetical protein YqbG-like | H: Hypothetical protein YqbG-like | T: alpha/beta-Hydrolases | F: VHL | ECOD (v295.2) |
| X | VHL | e8fvyX1 | A: alpha arrays | X: Hypothetical protein YqbG-like | H: Hypothetical protein YqbG-like | T: alpha/beta-Hydrolases | F: VHL | ECOD (v295.2) |
| W | VHL | e8fvyW1 | A: alpha arrays | X: Hypothetical protein YqbG-like | H: Hypothetical protein YqbG-like | T: alpha/beta-Hydrolases | F: VHL | ECOD (v295.2) |
| V | VHL | e8fvyV1 | A: alpha arrays | X: Hypothetical protein YqbG-like | H: Hypothetical protein YqbG-like | T: alpha/beta-Hydrolases | F: VHL | ECOD (v295.2) |
| U | VHL | e8fvyU1 | A: alpha arrays | X: Hypothetical protein YqbG-like | H: Hypothetical protein YqbG-like | T: alpha/beta-Hydrolases | F: VHL | ECOD (v295.2) |
| T | Thiol_cytolysin | e8fvyT01 | A: alpha arrays | X: Rossmann-like | H: Rossmann-related | T: FAD/NAD(P)-binding domain | F: Thiol_cytolysin | ECOD (v295.2) |
| B [auth A] | VHL | e8fvyA1 | A: alpha arrays | X: Hypothetical protein YqbG-like | H: Hypothetical protein YqbG-like | T: alpha/beta-Hydrolases | F: VHL | ECOD (v295.2) |
| S | VHL | e8fvyS1 | A: alpha arrays | X: Hypothetical protein YqbG-like | H: Hypothetical protein YqbG-like | T: alpha/beta-Hydrolases | F: VHL | ECOD (v295.2) |
| R | VHL | e8fvyR1 | A: alpha arrays | X: Hypothetical protein YqbG-like | H: Hypothetical protein YqbG-like | T: alpha/beta-Hydrolases | F: VHL | ECOD (v295.2) |
| Q | VHL | e8fvyQ1 | A: alpha arrays | X: Hypothetical protein YqbG-like | H: Hypothetical protein YqbG-like | T: alpha/beta-Hydrolases | F: VHL | ECOD (v295.2) |
| P | VHL | e8fvyP1 | A: alpha arrays | X: Hypothetical protein YqbG-like | H: Hypothetical protein YqbG-like | T: alpha/beta-Hydrolases | F: VHL | ECOD (v295.2) |
| O | VHL | e8fvyO1 | A: alpha arrays | X: Hypothetical protein YqbG-like | H: Hypothetical protein YqbG-like | T: alpha/beta-Hydrolases | F: VHL | ECOD (v295.2) |
| N | VHL | e8fvyN1 | A: alpha arrays | X: Hypothetical protein YqbG-like | H: Hypothetical protein YqbG-like | T: alpha/beta-Hydrolases | F: VHL | ECOD (v295.2) |
| M [auth L] | Thiol_cytolysin | e8fvyL01 | A: alpha arrays | X: Rossmann-like | H: Rossmann-related | T: FAD/NAD(P)-binding domain | F: Thiol_cytolysin | ECOD (v295.2) |
| L [auth K] | VHL | e8fvyK1 | A: alpha arrays | X: Hypothetical protein YqbG-like | H: Hypothetical protein YqbG-like | T: alpha/beta-Hydrolases | F: VHL | ECOD (v295.2) |
| K [auth J] | VHL | e8fvyJ1 | A: alpha arrays | X: Hypothetical protein YqbG-like | H: Hypothetical protein YqbG-like | T: alpha/beta-Hydrolases | F: VHL | ECOD (v295.2) |
| J [auth I] | VHL | e8fvyI1 | A: alpha arrays | X: Hypothetical protein YqbG-like | H: Hypothetical protein YqbG-like | T: alpha/beta-Hydrolases | F: VHL | ECOD (v295.2) |
Protein Family Annotation Pfam Database Homepage
| Chains | Accession | Name | Description | Comments | Source |
|---|---|---|---|---|---|
| H [auth G] | PF01092 | Ribosomal protein S6e (Ribosomal_S6e) | Ribosomal protein S6e | - | Family |
| G [auth F] | PF00177 | Ribosomal protein S7p/S5e (Ribosomal_S7) | Ribosomal protein S7p/S5e | This family contains ribosomal protein S7 from prokaryotes and S5 from eukaryotes. | Domain |
| G [auth F] | PF01599 | Ribosomal protein S27a (Ribosomal_S27) | Ribosomal protein S27a | This family of ribosomal proteins consists mainly of the 40S ribosomal protein S27a which is synthesised as a C-terminal extension of ubiquitin (CEP). The S27a domain compromises the C-terminal half of the protein. The synthesis of ribosomal proteins ... | Domain |
| F [auth E] | PF00900 | Ribosomal family S4e (Ribosomal_S4e) | Ribosomal family S4e | - | Family |
| F [auth E] | PF16121 | 40S ribosomal protein S4 C-terminus (40S_S4_C) | 40S ribosomal protein S4 C-terminus | - | Family |
| F [auth E] | PF08071 | RS4NT (NUC023) domain (RS4NT) | RS4NT (NUC023) domain | This is the N-terminal domain of Ribosomal S4 / S4e proteins. This domain is associated with S4 and KOW domains [1]. | Domain |
| E [auth D] | PF00189 | Ribosomal protein S3, C-terminal domain (Ribosomal_S3_C) | Ribosomal protein S3, C-terminal domain | This family contains a central domain Pfam:PF00013, hence the amino and carboxyl terminal domains are stored separately. This is a minimal carboxyl-terminal domain. Some are much longer. | Domain |
| D [auth C] | PF03719 | Ribosomal protein S5, C-terminal domain (Ribosomal_S5_C) | Ribosomal protein S5, C-terminal domain | Domain | |
| D [auth C] | PF01200 | Ribosomal protein S28e (Ribosomal_S28e) | Ribosomal protein S28e | Domain | |
| D [auth C] | PF00333 | Ribosomal protein S5, N-terminal domain (Ribosomal_S5) | Ribosomal protein S5, N-terminal domain | Domain | |
| GA [auth M] | PF01248 | Ribosomal protein L7Ae/L30e/S12e/Gadd45 family (Ribosomal_L7Ae) | Ribosomal protein L7Ae/L30e/S12e/Gadd45 family | This family includes: Ribosomal L7A from metazoa, Ribosomal L8-A and L8-B from fungi, 30S ribosomal protein HS6 from archaebacteria, 40S ribosomal protein S12 from eukaryotes, Ribosomal protein L30 from eukaryotes and archaebacteria. Gadd45 and MyD11 ... | Domain |
| PF01282 | Ribosomal protein S24e (Ribosomal_S24e) | Ribosomal protein S24e | - | Family | |
| PF00410 | Ribosomal protein S8 (Ribosomal_S8) | Ribosomal protein S8 | Domain | ||
| PF01249 | Ribosomal protein S21e (Ribosomal_S21e) | Ribosomal protein S21e | - | Family | |
| PF00338 | Ribosomal protein S10p/S20e (Ribosomal_S10) | Ribosomal protein S10p/S20e | This family includes small ribosomal subunit S10 from prokaryotes and S20 from eukaryotes. | Domain | |
| PF00416 | Ribosomal protein S13/S18 (Ribosomal_S13) | Ribosomal protein S13/S18 | - | Family | |
| PF00380 | Ribosomal protein S9/S16 (Ribosomal_S9) | Ribosomal protein S9/S16 | - | Family | |
| PF00203 | Ribosomal protein S19 (Ribosomal_S19) | Ribosomal protein S19 | Domain | ||
| PF00411 | Ribosomal protein S11 (Ribosomal_S11) | Ribosomal protein S11 | - | Family | |
| PF00312 | Ribosomal protein S15 (Ribosomal_S15) | Ribosomal protein S15 | Domain | ||
| L [auth K] | PF03501 | Plectin/S10 domain (S10_plectin) | Plectin/S10 domain | This presumed domain is found at the N-terminus of some isoforms of the cytoskeletal muscle protein plectin as well as the ribosomal S10 protein. This domain may be involved in RNA binding. | Domain |
| K [auth J] | PF00163 | Ribosomal protein S4/S9 N-terminal domain (Ribosomal_S4) | Ribosomal protein S4/S9 N-terminal domain | - | Family |
| K [auth J] | PF01479 | S4 domain (S4) | S4 domain | The S4 domain is a small domain consisting of 60-65 amino acid residues that was detected in the bacterial ribosomal protein S4, eukaryotic ribosomal S9, two families of pseudouridine synthases, a novel family of predicted RNA methylases, a yeast pro ... | Domain |
| J [auth I] | PF01201 | Ribosomal protein S8e (Ribosomal_S8e) | Ribosomal protein S8e | - | Family |














