8FKZ

Human nucleolar pre-60S ribosomal subunit (State G)


Domain Annotation: SCOP2 Classification SCOP2 Database Homepage

ChainsTypeFamily Name Domain Identifier Family IdentifierProvenance Source (Version)
Y [auth LR]SCOP2B SuperfamilyRibosomal protein L34e-like 8053540 3002203 SCOP2B (2021-05-27)
AA [auth LT]SCOP2B SuperfamilyTranslational proteins 8087455 3000811 SCOP2B (2021-05-27)
EA [auth LY]SCOP2B SuperfamilyRibosomal L38e protein-like 8053567 3002206 SCOP2B (2021-05-27)
FA [auth LZ]SCOP2B SuperfamilyRibosomal protein L39e 8095603 3001756 SCOP2B (2021-05-27)
TA [auth SK]SCOP2B SuperfamilyPentein 8098764 3000640 SCOP2B (2021-05-27)
J [auth LB]SCOP2B SuperfamilyRibosomal proteins L15p and L18e 8095977 3001045 SCOP2B (2021-05-27)
N [auth LF]SCOP2B Superfamily60S Ribosomal protein L22e 8053060 3002158 SCOP2B (2021-05-27)
O [auth LG]SCOP2B Superfamily50S Ribosomal protein L14-like 8072050 3000433 SCOP2B (2021-05-27)
P [auth LH]SCOP2B SuperfamilyRibosomal proteins S24e L23 and L15e 8095967 3000210 SCOP2B (2021-05-27)
Q [auth LI]SCOP2B SuperfamilyTranslation proteins SH3-like KOW motif containing domain 8076756 3000334 SCOP2B (2021-05-27)
R [auth LJ]SCOP2B SuperfamilyTranslation proteins SH3-like KOW motif containing domain 8053050 3000334 SCOP2B (2021-05-27)
U [auth LN]SCOP2B SuperfamilyTranslational proteins 8078351 3000811 SCOP2B (2021-05-27)
V [auth LO]SCOP2B SuperfamilyL30e-like 8077491 3001739 SCOP2B (2021-05-27)
BA [auth LU]SCOP2B SuperfamilyRibosomal protein L36e 8053120 3002161 SCOP2B (2021-05-27)
DA [auth LX]SCOP2B SuperfamilyZn-binding ribosomal proteins 8101551 3001320 SCOP2B (2021-05-27)
LA [auth SA]SCOP2B SuperfamilyRibosomal protein L4 8052832 3001146 SCOP2B (2021-05-27)
LA [auth SA]SCOP2B Superfamily60S ribosomal protein L4 C-terminal domain-like 8052831 3002143 SCOP2B (2021-05-27)
MA [auth SC]SCOP2B SuperfamilyRibosomal protein L6e N-terminal domain 8053099 3002160 SCOP2B (2021-05-27)
MA [auth SC]SCOP2B SuperfamilyTranslation proteins SH3-like KOW motif containing domain 8053100 3000334 SCOP2B (2021-05-27)
NA [auth SD]SCOP2B SuperfamilyRibosomal L30p/L7e protein N-terminal domain-lke 8052922 3002152 SCOP2B (2021-05-27)
NA [auth SD]SCOP2B SuperfamilyRibosomal protein L30p/L7e 8052923 3001378 SCOP2B (2021-05-27)
QA [auth SG]SCOP2B SuperfamilyRibosomal protein L6 8033688 3000724 SCOP2B (2021-05-27)
VA [auth SM]SCOP2B SuperfamilyBRCT domain-like 8092279 3000159 SCOP2B (2021-05-27)
E [auth L6]SCOP2B SuperfamilyRibosomal protein L13e-like 8053155 3002162 SCOP2B (2021-05-27)
H [auth L9]SCOP2B SuperfamilyRibosomal proteins S24e L23 and L15e 8098812 3000210 SCOP2B (2021-05-27)
I [auth LA]SCOP2B SuperfamilyRibosomal protein L22 8076704 3001078 SCOP2B (2021-05-27)

Domain Annotation: ECOD Classification ECOD Database Homepage

ChainsFamily NameDomain Identifier ArchitecturePossible HomologyHomologyTopologyFamilyProvenance Source (Version)
A [auth BA]PF00298e8fkzBA2 A: alpha arraysX: HTHH: HTHT: Ribosomal protein L11, C-terminal domainF: PF00298ECOD (1.6)
A [auth BA]PF03946e8fkzBA1 A: a+b two layersX: Ribosomal protein L11/L12e N-terminal domain-likeH: Ribosomal protein L11/L12e N-terminal domain (From Topology)T: Ribosomal protein L11/L12e N-terminal domainF: PF03946ECOD (1.6)
L [auth LD]PF01280e8fkzLD1 A: alpha arraysX: Ribosomal protein L19 (L19e) N-terminal domain (From Topology)H: Ribosomal protein L19 (L19e) N-terminal domain (From Topology)T: Ribosomal protein L19 (L19e) N-terminal domainF: PF01280ECOD (1.6)
L [auth LD]PF01280e8fkzLD2 A: alpha bundlesX: Ribosomal protein L19 (L19e) C-terminal domain (From Topology)H: Ribosomal protein L19 (L19e) C-terminal domain (From Topology)T: Ribosomal protein L19 (L19e) C-terminal domainF: PF01280ECOD (1.6)
T [auth LL]PF01778e8fkzLL1 A: a+b two layersX: RPL28 (From Topology)H: RPL28 (From Topology)T: RPL28F: PF01778ECOD (1.6)
Y [auth LR]PF01199e8fkzLR1 A: few secondary structure elementsX: Glucocorticoid receptor-likeH: RPL34 (From Topology)T: RPL34F: PF01199ECOD (1.6)
AA [auth LT]PF01247e8fkzLT1 A: beta barrelsX: cradle loop barrelH: RIFT-relatedT: Alanine racemase-CF: PF01247ECOD (1.6)
EA [auth LY]PF01781e8fkzLY1 A: a+b two layersX: SRP9/14-likeH: Signal recognition particle alu RNA binding heterodimer SRP9/14-related (From Topology)T: Signal recognition particle alu RNA binding heterodimer SRP9/14-relatedF: PF01781ECOD (1.6)
FA [auth LZ]PF00832e8fkzLZ1 A: extended segmentsX: Ribosomal protein L39e (From Topology)H: Ribosomal protein L39e (From Topology)T: Ribosomal protein L39eF: PF00832ECOD (1.6)
PA [auth SF]PF00181e8fkzSF2 A: beta barrelsX: OB-foldH: Nucleic acid-binding proteins (From Topology)T: Nucleic acid-binding proteinsF: PF00181ECOD (1.6)
PA [auth SF]PF03947e8fkzSF1 A: beta barrelsX: SH3H: SH3T: SH3F: PF03947ECOD (1.6)
SA [auth SI]PF00327,PF08079e8fkzSI1 A: a+b two layersX: Ribosomal protein L30p/L7e (From Topology)H: Ribosomal protein L30p/L7e (From Topology)T: Ribosomal protein L30p/L7eF: PF00327,PF08079ECOD (1.6)
TA [auth SK]PF01912e8fkzSK1 A: a+b duplicates or obligate multimersX: Pentein (From Topology)H: Pentein (From Topology)T: PenteinF: PF01912ECOD (1.6)
UA [auth SL]PF00687e8fkzSL1 A: a+b two layersX: a+b domain in Ribosomal protein L1 (From Topology)H: a+b domain in Ribosomal protein L1 (From Topology)T: a+b domain in Ribosomal protein L1F: PF00687ECOD (1.6)
UA [auth SL]PF00687e8fkzSL2 A: a/b three-layered sandwichesX: Flavodoxin-likeH: Rossmann-like domain in Ribosomal protein L1 (From Topology)T: Rossmann-like domain in Ribosomal protein L1F: PF00687ECOD (1.6)
J [auth LB]PF17135e8fkzLB1 A: a/b three-layered sandwichesX: Ribosomal protein L13/L15p/L18e/L32eH: Ribosomal proteins L15p and L18e (From Topology)T: Ribosomal proteins L15p and L18eF: PF17135ECOD (1.6)
K [auth LC]F_UNCLASSIFIEDe8fkzLC2 A: a+b two layersX: GP2-likeH: RplX-like (From Topology)T: RplX-likeF: F_UNCLASSIFIEDECOD (1.6)
K [auth LC]PF01775e8fkzLC1 A: a+b two layersX: GP2-likeH: RplX-like (From Topology)T: RplX-likeF: PF01775ECOD (1.6)
M [auth LE]PF01157e8fkzLE1 A: beta barrelsX: SH3H: SH3T: SH3F: PF01157ECOD (1.6)
N [auth LF]PF01776e8fkzLF1 A: a+b two layersX: Ribosomal protein L22e (From Topology)H: Ribosomal protein L22e (From Topology)T: Ribosomal protein L22eF: PF01776ECOD (1.6)
O [auth LG]PF00238e8fkzLG1 A: beta barrelsX: Ribosomal protein L14-likeH: Ribosomal protein L14-related (From Topology)T: Ribosomal protein L14-relatedF: PF00238ECOD (1.6)
P [auth LH]PF00276,PF03939e8fkzLH1 A: a+b two layersX: Alpha-beta plaitsH: Ribosomal proteins S24e, L23 and L15e (From Topology)T: Ribosomal proteins S24e, L23 and L15eF: PF00276,PF03939ECOD (1.6)
Q [auth LI]PF16906e8fkzLI1 A: beta barrelsX: SH3H: SH3T: SH3F: PF16906ECOD (1.6)
R [auth LJ]PF00467,PF01777e8fkzLJ1 A: beta barrelsX: SH3H: SH3T: SH3F: PF00467,PF01777ECOD (1.6)
S [auth LK]PF00828e8fkzLK1 A: a/b three-layered sandwichesX: Ribosomal protein L13/L15p/L18e/L32eH: Ribosomal proteins L15p and L18e (From Topology)T: Ribosomal proteins L15p and L18eF: PF00828ECOD (1.6)
U [auth LN]PF00297e8fkzLN1 A: beta barrelsX: cradle loop barrelH: RIFT-relatedT: Alanine racemase-CF: PF00297ECOD (1.6)
V [auth LO]PF01248e8fkzLO1 A: a+b three layersX: Bacillus chorismate mutase-likeH: L30e-like (From Topology)T: L30e-likeF: PF01248ECOD (1.6)
W [auth LP]PF01198e8fkzLP1 A: a+b two layersX: Ribosomal protein L31e-likeH: Ribosomal protein L31e/gp120 outer domain (From Topology)T: Ribosomal protein L31e/gp120 outer domainF: PF01198ECOD (1.6)
X [auth LQ]PF01655e8fkzLQ1 A: a/b three-layered sandwichesX: Ribosomal protein L13/L15p/L18e/L32eH: Ribosomal protein L32e (From Topology)T: Ribosomal protein L32eF: PF01655ECOD (1.6)
Z [auth LS]PF00831e8fkzLS1 A: alpha bundlesX: Long alpha-hairpinH: Ribosomal protein L29 (L29p) (From Topology)T: Ribosomal protein L29 (L29p)F: PF00831ECOD (1.6)
BA [auth LU]PF01158e8fkzLU1 A: alpha arraysX: 60S ribosomal protein rpL36 (L36e) (From Topology)H: 60S ribosomal protein rpL36 (L36e) (From Topology)T: 60S ribosomal protein rpL36 (L36e)F: PF01158ECOD (1.6)
CA [auth LW]PF01907e8fkzLW1 A: few secondary structure elementsX: Rubredoxin-likeH: Rubredoxin-relatedT: Rubredoxin-relatedF: PF01907ECOD (1.6)
DA [auth LX]PF01780e8fkzLX1 A: few secondary structure elementsX: Rubredoxin-likeH: Rubredoxin-relatedT: Rubredoxin-relatedF: PF01780ECOD (1.6)
LA [auth SA]PF00573e8fkzSA2 A: a/b three-layered sandwichesX: Ribosomal protein L4 (From Topology)H: Ribosomal protein L4 (From Topology)T: Ribosomal protein L4F: PF00573ECOD (1.6)
LA [auth SA]PF14374e8fkzSA1 A: extended segmentsX: C-terminal helical region in 60S ribosomal protein L4 (L4p) (From Topology)H: C-terminal helical region in 60S ribosomal protein L4 (L4p) (From Topology)T: C-terminal helical region in 60S ribosomal protein L4 (L4p)F: PF14374ECOD (1.6)
MA [auth SC]PF01159,PF03868e8fkzSC1 A: beta barrelsX: SH3H: SH3T: SH3F: PF01159,PF03868ECOD (1.6)
NA [auth SD]PF00327,PF08079e8fkzSD1 A: a+b two layersX: Ribosomal protein L30p/L7e (From Topology)H: Ribosomal protein L30p/L7e (From Topology)T: Ribosomal protein L30p/L7eF: PF00327,PF08079ECOD (1.6)
OA [auth SE]PF01248e8fkzSE1 A: a+b three layersX: Bacillus chorismate mutase-likeH: L30e-like (From Topology)T: L30e-likeF: PF01248ECOD (1.6)
QA [auth SG]PF00347e8fkzSG1 A: a+b two layersX: Ribosomal protein L6 (From Topology)H: Ribosomal protein L6 (From Topology)T: Ribosomal protein L6F: PF00347ECOD (1.6)
WA [auth SQ]PF00466e8fkzSQ1 A: a+b two layersX: Alpha-beta plaitsH: Ribosomal protein L10-like (From Topology)T: Ribosomal protein L10-likeF: PF00466ECOD (1.6)
WA [auth SQ]PF17777e8fkzSQ2 A: a+b two layersX: Insertion domain in 60S ribosomal protein rpP0 (L10P) (From Topology)H: Insertion domain in 60S ribosomal protein rpP0 (L10P) (From Topology)T: Insertion domain in 60S ribosomal protein rpP0 (L10P)F: PF17777ECOD (1.6)
E [auth L6]PF01294e8fkzL61 A: extended segmentsX: RPL13 (From Topology)H: RPL13 (From Topology)T: RPL13F: PF01294ECOD (1.6)
F [auth L7]PF00572e8fkzL71 A: a/b three-layered sandwichesX: Ribosomal protein L13/L15p/L18e/L32eH: Ribosomal protein L13 and L16-A (From Topology)T: Ribosomal protein L13 and L16-AF: PF00572ECOD (1.6)
G [auth L8]PF00467,PF01929e8fkzL81 A: beta barrelsX: SH3H: SH3T: SH3F: PF00467,PF01929ECOD (1.6)
H [auth L9]PF00827e8fkzL91 A: a+b two layersX: Alpha-beta plaitsH: Ribosomal proteins S24e, L23 and L15e (From Topology)T: Ribosomal proteins S24e, L23 and L15eF: PF00827ECOD (1.6)
I [auth LA]PF00237e8fkzLA1 A: a+b two layersX: Enolase-N/ribosomal proteinH: Ribosomal protein L22 (From Topology)T: Ribosomal protein L22F: PF00237ECOD (1.6)

Protein Family Annotation Pfam Database Homepage

ChainsAccessionNameDescriptionCommentsSource
A [auth BA]PF03946Ribosomal protein L11, N-terminal domain (Ribosomal_L11_N)Ribosomal protein L11, N-terminal domainThe N-terminal domain of Ribosomal protein L11 adopts an alpha/beta fold and is followed by the RNA binding C-terminal domain.Domain
A [auth BA]PF00298Ribosomal protein L11, RNA binding domain (Ribosomal_L11)Ribosomal protein L11, RNA binding domain- Domain
L [auth LD]PF01280Ribosomal protein L19e (Ribosomal_L19e)Ribosomal protein L19e- Family
T [auth LL]PF01778Ribosomal L28e protein family (Ribosomal_L28e)Ribosomal L28e protein family- Family
AA [auth LT]PF01247Ribosomal protein L35Ae (Ribosomal_L35Ae)Ribosomal protein L35Ae- Domain
EA [auth LY]PF01781Ribosomal L38e protein family (Ribosomal_L38e)Ribosomal L38e protein family- Family
FA [auth LZ]PF00832Ribosomal L39 protein (Ribosomal_L39)Ribosomal L39 protein- Family
PA [auth SF]PF03947Ribosomal Proteins L2, C-terminal domain (Ribosomal_L2_C)Ribosomal Proteins L2, C-terminal domain- Domain
SA [auth SI]PF08079Ribosomal L30 N-terminal domain (Ribosomal_L30_N)Ribosomal L30 N-terminal domainThis presumed domain is found at the N-terminus of Ribosomal L30 proteins and has been termed RL30NT or NUC018 [1].Domain
SA [auth SI]PF00327Ribosomal protein L30p/L7e (Ribosomal_L30)Ribosomal protein L30p/L7eThis family includes prokaryotic L30 and eukaryotic L7.Domain
TA [auth SK]PF01912eIF-6 family (eIF-6)eIF-6 family- Family
UA [auth SL]PF00687Ribosomal protein L1p/L10e family (Ribosomal_L1)Ribosomal protein L1p/L10e familyThis family includes prokaryotic L1 and eukaryotic L10.Domain
J [auth LB]PF17135Ribosomal protein 60S L18 and 50S L18e (Ribosomal_L18)Ribosomal protein 60S L18 and 50S L18e- Family
K [auth LC]PF01775Ribosomal proteins 50S-L18Ae/60S-L20/60S-L18A (Ribosomal_L18A)Ribosomal proteins 50S-L18Ae/60S-L20/60S-L18AThis family includes: archaeal 50S ribosomal protein L18Ae, often referred to as L20e or LX; fungal 60S ribosomal protein L20; and higher eukaryote 60S ribosomal protein L18A.Domain
O [auth LG]PF00238Ribosomal protein L14p/L23e (Ribosomal_L14)Ribosomal protein L14p/L23e- Domain
P [auth LH]PF03939Ribosomal protein L23, N-terminal domain (Ribosomal_L23eN)Ribosomal protein L23, N-terminal domain- Family
P [auth LH]PF00276Ribosomal protein L23 (Ribosomal_L23)Ribosomal protein L23- Family
Q [auth LI]PF16906Ribosomal proteins L26 eukaryotic, L24P archaeal (Ribosomal_L26)Ribosomal proteins L26 eukaryotic, L24P archaeal- Family
Q [auth LI]PF00467KOW motif (KOW)KOW motif- Family
R [auth LJ]PF01777Ribosomal L27e protein family (Ribosomal_L27e)Ribosomal L27e protein family- Family
R [auth LJ]PF00467KOW motif (KOW)KOW motif- Family
S [auth LK]PF00828Ribosomal proteins 50S-L15, 50S-L18e, 60S-L27A (Ribosomal_L27A)Ribosomal proteins 50S-L15, 50S-L18e, 60S-L27A- Family
W [auth LP]PF01198Ribosomal protein L31e (Ribosomal_L31e)Ribosomal protein L31e- Family
X [auth LQ]PF01655Ribosomal protein L32 (Ribosomal_L32e)Ribosomal protein L32- Family
Z [auth LS]PF00831Ribosomal L29 protein (Ribosomal_L29)Ribosomal L29 protein- Family
BA [auth LU]PF01158Ribosomal protein L36e (Ribosomal_L36e)Ribosomal protein L36e- Family
GA [auth NB]PF08701GNL3L/Grn1 putative GTPase (GN3L_Grn1)GNL3L/Grn1 putative GTPase- Family
IA [auth NF]PF01201Ribosomal protein S8e (Ribosomal_S8e)Ribosomal protein S8e- Family
JA [auth NK]PF10169LLP homolog (LLPH)LLP homolog- Family
LA [auth SA]PF1437460S ribosomal protein L4 C-terminal domain (Ribos_L4_asso_C)60S ribosomal protein L4 C-terminal domainThis family is found at the very C-terminal of 60 ribosomal L4 proteins.Domain
LA [auth SA]PF00573Ribosomal protein L4/L1 family (Ribosomal_L4)Ribosomal protein L4/L1 family- Family
MA [auth SC]PF01159Ribosomal protein L6e (Ribosomal_L6e)Ribosomal protein L6e- Family
NA [auth SD]PF00327Ribosomal protein L30p/L7e (Ribosomal_L30)Ribosomal protein L30p/L7eThis family includes prokaryotic L30 and eukaryotic L7.Domain
OA [auth SE]PF01248Ribosomal protein L7Ae/L30e/S12e/Gadd45 family (Ribosomal_L7Ae)Ribosomal protein L7Ae/L30e/S12e/Gadd45 familyThis family includes: Ribosomal L7A from metazoa, Ribosomal L8-A and L8-B from fungi, 30S ribosomal protein HS6 from archaebacteria, 40S ribosomal protein S12 from eukaryotes, Ribosomal protein L30 from eukaryotes and archaebacteria. Gadd45 and MyD11 ...This family includes: Ribosomal L7A from metazoa, Ribosomal L8-A and L8-B from fungi, 30S ribosomal protein HS6 from archaebacteria, 40S ribosomal protein S12 from eukaryotes, Ribosomal protein L30 from eukaryotes and archaebacteria. Gadd45 and MyD118 [1].
Domain
QA [auth SG]PF00347Ribosomal protein L6 (Ribosomal_L6)Ribosomal protein L6- Domain
RA [auth SH]PF00076RNA recognition motif (RRM_1)RNA recognition motifThe RRM motif (a.k.a. RRM, RBD, or RNP domain) is probably diagnostic of an RNA binding protein. RRMs are found in a variety of RNA binding proteins, including various hnRNP proteins, proteins implicated in regulation of alternative splicing, and pro ...The RRM motif (a.k.a. RRM, RBD, or RNP domain) is probably diagnostic of an RNA binding protein. RRMs are found in a variety of RNA binding proteins, including various hnRNP proteins, proteins implicated in regulation of alternative splicing, and protein components of snRNPs. The motif also appears in a few single stranded DNA binding proteins. The RRM structure consists of four strands and two helices arranged in an alpha/beta sandwich, with a third helix present during RNA binding in some cases The C-terminal beta strand (4th strand) and final helix are hard to align and have been omitted in the SEED alignment The LA proteins (Swiss:P05455) have an N terminal rrm which is included in the seed. There is a second region towards the C terminus that has some features characteristic of a rrm but does not appear to have the important structural core of a rrm. The LA proteins (Swiss:P05455) are one of the main autoantigens in Systemic lupus erythematosus (SLE), an autoimmune disease.
Domain
VA [auth SM]PF06732Pescadillo N-terminus (Pescadillo_N)Pescadillo N-terminus- Family
VA [auth SM]PF16589BRCT domain, a BRCA1 C-terminus domain (BRCT_2)BRCT domain, a BRCA1 C-terminus domain- Family
WA [auth SQ]PF17777Insertion domain in 60S ribosomal protein L10P (RL10P_insert)Insertion domain in 60S ribosomal protein L10PThis domain is found in prokaryotic and archaeal ribosomal L10 protein [1].Domain
WA [auth SQ]PF00466Ribosomal protein L10 (Ribosomal_L10)Ribosomal protein L10- Family
XA [auth SR]PF08155NOGCT (NUC087) domain (NOGCT)NOGCT (NUC087) domainThis C terminal domain is found in the NOG subfamily of nucleolar GTP-binding proteins [1].Domain
XA [auth SR]PF17835NOG1 N-terminal helical domain (NOG1_N)NOG1 N-terminal helical domainThis domain is found at the N-terminus of NOG1 GTPase proteins.Domain
XA [auth SR]PF06858Nucleolar GTP-binding protein 1 (NOG1) (NOG1)Nucleolar GTP-binding protein 1 (NOG1)- Family
YA [auth SV]PF01246Ribosomal protein L24e (Ribosomal_L24e)Ribosomal protein L24e- Domain
F [auth L7]PF00572Ribosomal protein L13 (Ribosomal_L13)Ribosomal protein L13- Family
G [auth L8]PF01929Ribosomal protein L14 (Ribosomal_L14e)Ribosomal protein L14- Family
H [auth L9]PF00827Ribosomal L15 (Ribosomal_L15e)Ribosomal L15- Family
I [auth LA]PF00237Ribosomal protein L22p/L17e (Ribosomal_L22)Ribosomal protein L22p/L17eThis family includes L22 from prokaryotes and chloroplasts and L17 from eukaryotes.Domain

Gene Ontology: Gene Product Annotation Gene Ontology Database Homepage

ChainsPolymerMolecular FunctionBiological ProcessCellular Component
A [auth BA]60S ribosomal protein L12
B [auth L1]5.8S rRNA---
L [auth LD]60S ribosomal protein L19
T [auth LL]60S ribosomal protein L28
Y [auth LR]60S ribosomal protein L34
AA [auth LT]60S ribosomal protein L35a
EA [auth LY]60S ribosomal protein L38
FA [auth LZ]60S ribosomal protein L39
HA [auth NC]Nucleolar GTP-binding protein 2
PA [auth SF]60S ribosomal protein L8
SA [auth SI]60S ribosomal protein L7-like 1
TA [auth SK]Eukaryotic translation initiation factor 6
UA [auth SL]Ribosomal L1 domain-containing protein 1
J [auth LB]60S ribosomal protein L18
K [auth LC]60S ribosomal protein L18a
M [auth LE]60S ribosomal protein L21
N [auth LF]60S ribosomal protein L22
O [auth LG]60S ribosomal protein L23
P [auth LH]60S ribosomal protein L23a
Q [auth LI]60S ribosomal protein L26
R [auth LJ]60S ribosomal protein L27
S [auth LK]60S ribosomal protein L27a
U [auth LN]60S ribosomal protein L3
V [auth LO]60S ribosomal protein L30
W [auth LP]60S ribosomal protein L31
X [auth LQ]60S ribosomal protein L32
Z [auth LS]60S ribosomal protein L35
BA [auth LU]60S ribosomal protein L36
CA [auth LW]60S ribosomal protein L37
C [auth L2]ITS2 rRNA---
DA [auth LX]60S ribosomal protein L37a
GA [auth NB]Guanine nucleotide-binding protein-like 3
IA [auth NF]Ribosome biogenesis protein NSA2 homolog
JA [auth NK]Protein LLP homolog
KA [auth NL]Ribosome biogenesis protein NOP53
LA [auth SA]60S ribosomal protein L4
MA [auth SC]60S ribosomal protein L6
D [auth L3]28S rRNA---
NA [auth SD]60S ribosomal protein L7
OA [auth SE]60S ribosomal protein L7a
QA [auth SG]60S ribosomal protein L9
RA [auth SH]MKI67 FHA domain-interacting nucleolar phosphoprotein
VA [auth SM]Pescadillo homolog
WA [auth SQ]mRNA turnover protein 4 homolog
E [auth L6]60S ribosomal protein L13
XA [auth SR]GTP-binding protein 4
YA [auth SV]Probable ribosome biogenesis protein RLP24
F [auth L7]60S ribosomal protein L13a
G [auth L8]60S ribosomal protein L14
H [auth L9]60S ribosomal protein L15
I [auth LA]60S ribosomal protein L17

InterPro: Protein Family Classification InterPro Database Homepage

ChainsAccessionNameType
A [auth BA]IPR020785Large ribosomal subunit protein uL11, conserved siteConserved Site
A [auth BA]IPR020783Large ribosomal subunit protein uL11, C-terminalDomain
A [auth BA]IPR000911Ribosomal protein uL11Family
A [auth BA]IPR020784Large ribosomal subunit protein uL11, N-terminalDomain
A [auth BA]IPR036769Large ribosomal subunit protein uL11, C-terminal domain superfamilyHomologous Superfamily
A [auth BA]IPR036796Large ribosomal subunit protein uL11, N-terminal domain superfamilyHomologous Superfamily
L [auth LD]IPR039547Large ribosomal subunit protein eL19Family
L [auth LD]IPR023638Large ribosomal subunit protein eL19, conserved siteConserved Site
L [auth LD]IPR033935Large ribosomal subunit protein eL19, eukaryoticDomain
L [auth LD]IPR015972Large ribosomal subunit protein eL19, domain 1Homologous Superfamily
L [auth LD]IPR035970Large ribosomal subunit protein eL19 superfamilyHomologous Superfamily
L [auth LD]IPR000196Large ribosomal subunit protein eL19 domainDomain
T [auth LL]IPR029004Ribosomal eL28/Mak16Domain
T [auth LL]IPR002672Large ribosomal subunit protein eL28Family
Y [auth LR]IPR018065Large ribosomal subunit protein eL34, conserved siteConserved Site
Y [auth LR]IPR008195Large ribosomal subunit protein eL34Family
AA [auth LT]IPR038661Large ribosomal subunit protein eL33 superfamilyHomologous Superfamily
AA [auth LT]IPR018266Large ribosomal subunit protein eL33, conserved siteConserved Site
AA [auth LT]IPR009000Translation protein, beta-barrel domain superfamilyHomologous Superfamily
AA [auth LT]IPR001780Large ribosomal subunit protein eL33Family
EA [auth LY]IPR002675Large ribosomal subunit protein eL38Family
EA [auth LY]IPR038464Large ribosomal subunit protein eL38 superfamilyHomologous Superfamily
FA [auth LZ]IPR000077Large ribosomal subunit protein eL39Family
FA [auth LZ]IPR020083Large ribosomal subunit protein eL39, conserved siteConserved Site
FA [auth LZ]IPR023626Large ribosomal subunit protein eL39 domain superfamilyHomologous Superfamily
HA [auth NC]IPR030378Circularly permuted (CP)-type guanine nucleotide-binding (G) domainDomain
HA [auth NC]IPR024929Nucleolar GTP-binding protein 2, circularly permuted GTPase motifDomain
HA [auth NC]IPR006073GTP binding domainDomain
HA [auth NC]IPR012971Nucleolar GTP-binding protein 2, N-terminal domainDomain
HA [auth NC]IPR023179GTP-binding protein, orthogonal bundle domain superfamilyHomologous Superfamily
HA [auth NC]IPR027417P-loop containing nucleoside triphosphate hydrolaseHomologous Superfamily
PA [auth SF]IPR022669Large ribosomal subunit protein uL2, C-terminalDomain
PA [auth SF]IPR014722Large ribosomal subunit protein uL2, domain 2Homologous Superfamily
PA [auth SF]IPR008991Translation protein SH3-like domain superfamilyHomologous Superfamily
PA [auth SF]IPR023672Large ribosomal subunit protein uL2, archaeal-typeFamily
PA [auth SF]IPR022671Large ribosomal subunit protein uL2, conserved siteConserved Site
PA [auth SF]IPR012340Nucleic acid-binding, OB-foldHomologous Superfamily
PA [auth SF]IPR022666Large ribosomal subunit protein uL2, RNA-binding domainDomain
PA [auth SF]IPR014726Large ribosomal subunit protein uL2, domain 3Homologous Superfamily
PA [auth SF]IPR002171Large ribosomal subunit protein uL2Family
SA [auth SI]IPR035808Large ribosomal subunit protein uL30, eukaryotic/archaealDomain
SA [auth SI]IPR036919Large ribosomal subunit protein uL30, ferredoxin-like fold domain superfamilyHomologous Superfamily
SA [auth SI]IPR012988Large ribosomal subunit protein uL30, N-terminal, eukaryotesDomain
SA [auth SI]IPR039699Large ribosomal subunit protein uL30Family
SA [auth SI]IPR005998Large ribosomal subunit protein uL30, eukaryoticFamily
SA [auth SI]IPR016082Large ribosomal subunit protein uL30-like, ferredoxin-like fold domainDomain
SA [auth SI]IPR018038Large ribosomal subunit protein uL30, conserved siteConserved Site
TA [auth SK]IPR002769Translation initiation factor IF6Family
UA [auth SL]IPR023674Ribosomal protein uL1-likeHomologous Superfamily
UA [auth SL]IPR016095Large ribosomal subunit protein uL1, 3-layer alpha/beta-sandwich domainHomologous Superfamily
UA [auth SL]IPR028364Ribosomal protein uL1/ribosomal biogenesis proteinFamily
J [auth LB]IPR021132Large ribosomal subunit protein eL18, conserved siteConserved Site
J [auth LB]IPR000039Large ribosomal subunit protein eL18Family
J [auth LB]IPR021131Large ribosomal subunit protein uL15/eL18Domain
J [auth LB]IPR036227Large ribosomal subunit protein uL15/eL18 superfamilyHomologous Superfamily
K [auth LC]IPR028877Large ribosomal subunit protein eL20Family
K [auth LC]IPR023573Large ribosomal subunit protein eL20 domainDomain
K [auth LC]IPR021138Large ribosomal subunit protein eL20, eukaryotesFamily
M [auth LE]IPR001147Large ribosomal subunit protein eL21Family
M [auth LE]IPR008991Translation protein SH3-like domain superfamilyHomologous Superfamily
M [auth LE]IPR018259Large ribosomal subunit protein eL21, conserved siteConserved Site
M [auth LE]IPR036948Large ribosomal subunit protein eL21 superfamilyHomologous Superfamily
N [auth LF]IPR038526Large ribosomal subunit protein eL22 superfamilyHomologous Superfamily
N [auth LF]IPR002671Large ribosomal subunit protein eL22Family
O [auth LG]IPR019972Large ribosomal subunit protein uL14, conserved siteConserved Site
O [auth LG]IPR036853Large ribosomal subunit protein uL14 superfamilyHomologous Superfamily
O [auth LG]IPR000218Large ribosomal subunit protein uL14Family
P [auth LH]IPR019985Large ribosomal subunit protein uL23Family
P [auth LH]IPR001014Large ribosomal subunit protein uL23, conserved siteConserved Site
P [auth LH]IPR013025Large ribosomal subunit protein uL23-likeFamily
P [auth LH]IPR012678Ribosomal protein uL23/eL15/eS24 core domain superfamilyHomologous Superfamily
P [auth LH]IPR012677Nucleotide-binding alpha-beta plait domain superfamilyHomologous Superfamily
P [auth LH]IPR005633Large ribosomal subunit protein uL23, N-terminalDomain
Q [auth LI]IPR014722Large ribosomal subunit protein uL2, domain 2Homologous Superfamily
Q [auth LI]IPR005756Large ribosomal subunit protein uL24, eukaryotic/archaealFamily
Q [auth LI]IPR041988Large ribosomal subunit protein uL24, KOW domainDomain
Q [auth LI]IPR008991Translation protein SH3-like domain superfamilyHomologous Superfamily
Q [auth LI]IPR005824KOWDomain
Q [auth LI]IPR005825Large ribosomal subunit protein uL24, conserved siteConserved Site
R [auth LJ]IPR001141Large ribosomal subunit protein eL27Family
R [auth LJ]IPR018262Large ribosomal subunit protein eL27, conserved siteConserved Site
R [auth LJ]IPR008991Translation protein SH3-like domain superfamilyHomologous Superfamily
R [auth LJ]IPR038655Large ribosomal subunit protein eL27 superfamilyHomologous Superfamily
R [auth LJ]IPR005824KOWDomain
R [auth LJ]IPR041991Large ribosomal subunit protein eL27, KOW domainDomain
S [auth LK]IPR027386Ribosomal uL15, N-terminalHomologous Superfamily
S [auth LK]IPR001196Large ribosomal subunit protein uL15, conserved siteConserved Site
S [auth LK]IPR021131Large ribosomal subunit protein uL15/eL18Domain
S [auth LK]IPR030878Large ribosomal subunit protein uL15Family
S [auth LK]IPR036227Large ribosomal subunit protein uL15/eL18 superfamilyHomologous Superfamily
U [auth LN]IPR019926Large ribosomal subunit protein uL3, conserved siteConserved Site
U [auth LN]IPR045077Large ribosomal subunit protein uL3, archaeal/eukaryotic-typeFamily
U [auth LN]IPR044892Ribosomal protein L3, domain 3, archaeal-type superfamilyHomologous Superfamily
U [auth LN]IPR000597Large ribosomal subunit protein uL3Family
U [auth LN]IPR009000Translation protein, beta-barrel domain superfamilyHomologous Superfamily
V [auth LO]IPR022991Large ribosomal subunit protein eL30, conserved siteConserved Site
V [auth LO]IPR004038Ribosomal protein eL8/eL30/eS12/Gadd45Domain
V [auth LO]IPR000231Large ribosomal subunit protein eL30Family
V [auth LO]IPR039109Large ribosomal subunit protein eL30-likeFamily
V [auth LO]IPR029064Ribosomal protein eL30-like superfamilyHomologous Superfamily
W [auth LP]IPR000054Large ribosomal subunit protein eL31Family
W [auth LP]IPR020052Large ribosomal subunit protein eL31, conserved siteConserved Site
W [auth LP]IPR023621Large ribosomal subunit protein eL31 domain superfamilyHomologous Superfamily
X [auth LQ]IPR036351Large ribosomal subunit protein eL32 superfamilyHomologous Superfamily
X [auth LQ]IPR001515Large ribosomal subunit protein eL32Family
X [auth LQ]IPR018263Large ribosomal subunit protein eL32, conserved siteConserved Site
Z [auth LS]IPR036049Large ribosomal subunit protein uL29 superfamilyHomologous Superfamily
Z [auth LS]IPR045059Large ribosomal subunit protein uL29, eukaryotesFamily
Z [auth LS]IPR001854Large ribosomal subunit protein uL29Family
Z [auth LS]IPR018254Large ribosomal subunit protein uL29, conserved siteConserved Site
BA [auth LU]IPR000509Large ribosomal subunit protein eL36Family
BA [auth LU]IPR038097Large ribosomal subunit protein eL36 domain superfamilyHomologous Superfamily
CA [auth LW]IPR011331Large ribosomal subunit protein eL37/eL43Homologous Superfamily
CA [auth LW]IPR001569Large ribosomal subunit protein eL37Family
CA [auth LW]IPR018267Large ribosomal subunit protein eL37, conserved siteConserved Site
CA [auth LW]IPR011332Zinc-binding ribosomal proteinHomologous Superfamily
DA [auth LX]IPR011331Large ribosomal subunit protein eL37/eL43Homologous Superfamily
DA [auth LX]IPR002674Large ribosomal subunit protein eL43Family
DA [auth LX]IPR011332Zinc-binding ribosomal proteinHomologous Superfamily
GA [auth NB]IPR030378Circularly permuted (CP)-type guanine nucleotide-binding (G) domainDomain
GA [auth NB]IPR006073GTP binding domainDomain
GA [auth NB]IPR014813Guanine nucleotide-binding protein-like 3, N-terminal domainDomain
GA [auth NB]IPR027417P-loop containing nucleoside triphosphate hydrolaseHomologous Superfamily
IA [auth NF]IPR039411Ribosomal biogenesis NSA2 familyFamily
IA [auth NF]IPR022309Ribosomal protein eS8/ribosomal biogenesis NSA2Family
JA [auth NK]IPR018784LLP homolog-likeFamily
KA [auth NL]IPR011687Ribosome biogenesis protein Nop53/GLTSCR2Family
LA [auth SA]IPR045240Large ribosomal subunit protein uL4, eukaryotic and archaeal typeFamily
LA [auth SA]IPR025755Large ribosomal subunit protein uL4, C-terminal domainDomain
LA [auth SA]IPR002136Large ribosomal subunit protein uL4Family
LA [auth SA]IPR013000Large ribosomal subunit protein uL4, eukaryotic/archaeal, conserved siteConserved Site
LA [auth SA]IPR023574Large ribosomal subunit protein uL4 domain superfamilyHomologous Superfamily
MA [auth SC]IPR005568Large ribosomal subunit protein uL6, N-terminalDomain
MA [auth SC]IPR049633Large ribosomal subunit protein eL6, conserved siteConserved Site
MA [auth SC]IPR014722Large ribosomal subunit protein uL2, domain 2Homologous Superfamily
MA [auth SC]IPR041997Large ribosomal subunit protein eL6, KOW domainDomain
MA [auth SC]IPR008991Translation protein SH3-like domain superfamilyHomologous Superfamily
MA [auth SC]IPR000915Large ribosomal subunit protein eL6Family
NA [auth SD]IPR035808Large ribosomal subunit protein uL30, eukaryotic/archaealDomain
NA [auth SD]IPR016082Large ribosomal subunit protein uL30-like, ferredoxin-like fold domainDomain
NA [auth SD]IPR018038Large ribosomal subunit protein uL30, conserved siteConserved Site
NA [auth SD]IPR036919Large ribosomal subunit protein uL30, ferredoxin-like fold domain superfamilyHomologous Superfamily
NA [auth SD]IPR012988Large ribosomal subunit protein uL30, N-terminal, eukaryotesDomain
NA [auth SD]IPR039699Large ribosomal subunit protein uL30Family
NA [auth SD]IPR005998Large ribosomal subunit protein uL30, eukaryoticFamily
OA [auth SE]IPR001921Large ribosomal subunit protein eL8Family
OA [auth SE]IPR004038Ribosomal protein eL8/eL30/eS12/Gadd45Domain
OA [auth SE]IPR004037Large ribosomal subunit protein eL8-like, conserved siteConserved Site
OA [auth SE]IPR029064Ribosomal protein eL30-like superfamilyHomologous Superfamily
OA [auth SE]IPR018492Ribosomal protein eL8/Nhp2 familyFamily
QA [auth SG]IPR036789Large ribosomal subunit protein uL6-like, alpha-beta domain superfamilyHomologous Superfamily
QA [auth SG]IPR020040Large ribosomal subunit protein uL6, alpha-beta domainDomain
QA [auth SG]IPR002359Large ribosomal subunit protein uL6, conserved site-2Conserved Site
QA [auth SG]IPR000702Large ribosomal subunit protein uL6-likeFamily
RA [auth SH]IPR021043MKI67 FHA domain-interacting nucleolar phosphoprotein, FHA Ki67 bindingDomain
RA [auth SH]IPR000504RNA recognition motif domainDomain
RA [auth SH]IPR012677Nucleotide-binding alpha-beta plait domain superfamilyHomologous Superfamily
RA [auth SH]IPR035979RNA-binding domain superfamilyHomologous Superfamily
VA [auth SM]IPR010613PescadilloFamily
VA [auth SM]IPR001357BRCT domainDomain
VA [auth SM]IPR036420BRCT domain superfamilyHomologous Superfamily
WA [auth SQ]IPR043141Large ribosomal subunit protein uL10-like domain superfamilyHomologous Superfamily
WA [auth SQ]IPR001790Large ribosomal subunit protein uL10Family
WA [auth SQ]IPR043164Large ribosomal subunit protein uL10-like, insertion domain superfamilyHomologous Superfamily
WA [auth SQ]IPR040637Large ribosomal subunit protein uL10-like, insertion domainDomain
WA [auth SQ]IPR033867Ribosome assembly factor Mrt4Family
E [auth L6]IPR001380Large ribosomal subunit protein eL13Family
E [auth L6]IPR018256Large ribosomal subunit protein eL13, conserved siteConserved Site
XA [auth SR]IPR024926Nucleolar GTP-binding protein 1Family
XA [auth SR]IPR027417P-loop containing nucleoside triphosphate hydrolaseHomologous Superfamily
XA [auth SR]IPR031167OBG-type guanine nucleotide-binding (G) domainDomain
XA [auth SR]IPR012973NOG, C-terminalDomain
XA [auth SR]IPR010674Nucleolar GTP-binding protein 1, Rossman-fold domainDomain
XA [auth SR]IPR041623NOG1, N-terminal helical domainDomain
XA [auth SR]IPR005225Small GTP-binding protein domainDomain
XA [auth SR]IPR006073GTP binding domainDomain
YA [auth SV]IPR023438Large ribosomal subunit protein eL24Family
YA [auth SV]IPR011017TRASH domainDomain
YA [auth SV]IPR000988Large ribosomal subunit protein eL24-relatedFamily
YA [auth SV]IPR023442Large ribosomal subunit protein eL24, conserved siteConserved Site
YA [auth SV]IPR038630Ribosomal protein L24e/L24 superfamilyHomologous Superfamily
F [auth L7]IPR023563Large ribosomal subunit protein uL13, conserved siteConserved Site
F [auth L7]IPR005755Large ribosomal subunit protein uL13, eukaryotic/archaealFamily
F [auth L7]IPR005822Large ribosomal subunit protein uL13Family
F [auth L7]IPR036899Large ribosomal subunit protein uL13 superfamilyHomologous Superfamily
G [auth L8]IPR014722Large ribosomal subunit protein uL2, domain 2Homologous Superfamily
G [auth L8]IPR008991Translation protein SH3-like domain superfamilyHomologous Superfamily
G [auth L8]IPR039660Large ribosomal subunit protein eL14Family
G [auth L8]IPR041985Large ribosomal subunit protein eL14, KOW motifDomain
G [auth L8]IPR002784Large ribosomal subunit protein eL14 domainDomain
H [auth L9]IPR020925Large ribosomal subunit protein eL15, conserved siteConserved Site
H [auth L9]IPR012678Ribosomal protein uL23/eL15/eS24 core domain superfamilyHomologous Superfamily
H [auth L9]IPR024794Large ribosomal subunit protein eL15 core domain superfamilyHomologous Superfamily
H [auth L9]IPR000439Large ribosomal subunit protein eL15Family
I [auth LA]IPR036394Ribosomal protein uL22 superfamilyHomologous Superfamily
I [auth LA]IPR001063Large ribosomal subunit protein uL22Family
I [auth LA]IPR018260Large ribosomal subunit protein uL22, conserved siteConserved Site
I [auth LA]IPR005721Large ribosomal subunit protein uL22, eukaryotic/archaealFamily

Pharos: Disease Associations Pharos Homepage Annotation

ChainsDrug Target  Associated Disease
T [auth LL]PharosP46779
Y [auth LR]PharosP49207
AA [auth LT]PharosP18077
EA [auth LY]PharosP63173
HA [auth NC]PharosQ13823
SA [auth SI]PharosQ6DKI1
UA [auth SL]PharosO76021
J [auth LB]PharosQ07020
O [auth LG]PharosP62829
P [auth LH]PharosP62750
Q [auth LI]PharosP61254
S [auth LK]PharosP46776
W [auth LP]PharosP62899
Z [auth LS]PharosP42766
BA [auth LU]PharosQ9Y3U8
CA [auth LW]PharosP61927
DA [auth LX]PharosP61513
IA [auth NF]PharosO95478
JA [auth NK]PharosQ9BRT6
MA [auth SC]PharosQ02878
OA [auth SE]PharosP62424
VA [auth SM]PharosO00541
WA [auth SQ]PharosQ9UKD2
YA [auth SV]PharosQ9UHA3
H [auth L9]PharosP61313
I [auth LA]PharosP18621

Protein Modification Annotation

Modified Residue(s)
ChainResidue(s)Description
U [auth LN]HIC Parent Component: HIS

RESIDAA0317

PSI-MOD :  1'-methyl-L-histidine MOD:00322