8FKT
Human nucleolar pre-60S ribosomal subunit (State C1)
Domain Annotation: SCOP2 Classification SCOP2 Database Homepage
Chains | Type | Family Name | Domain Identifier | Family Identifier | Provenance Source (Version) |
---|---|---|---|---|---|
B [auth BB] | SCOP2B Superfamily | Ribosomal protein L1p/L10e-like | 8098870 | 3001911 | SCOP2B (2022-06-29) |
I [auth L9] | SCOP2B Superfamily | Ribosomal proteins S24e L23 and L15e | 8098812 | 3000210 | SCOP2B (2022-06-29) |
J [auth LA] | SCOP2B Superfamily | Ribosomal protein L22 | 8076704 | 3001078 | SCOP2B (2022-06-29) |
K [auth LB] | SCOP2B Superfamily | Ribosomal proteins L15p and L18e | 8095977 | 3001045 | SCOP2B (2022-06-29) |
N [auth LG] | SCOP2B Superfamily | 50S Ribosomal protein L14-like | 8072050 | 3000433 | SCOP2B (2022-06-29) |
O [auth LH] | SCOP2B Superfamily | Ribosomal proteins S24e L23 and L15e | 8095967 | 3000210 | SCOP2B (2022-06-29) |
P [auth LI] | SCOP2B Superfamily | Translation proteins SH3-like KOW motif containing domain | 8076756 | 3000334 | SCOP2B (2022-06-29) |
R [auth LN] | SCOP2B Superfamily | Translational proteins | 8078351 | 3000811 | SCOP2B (2022-06-29) |
U [auth LT] | SCOP2B Superfamily | Translational proteins | 8087455 | 3000811 | SCOP2B (2022-06-29) |
V [auth LU] | SCOP2B Superfamily | Ribosomal protein L36e | 8053120 | 3002161 | SCOP2B (2022-06-29) |
Z [auth NH] | SCOP2B Superfamily | Pre-PUA domain | 8032388 | 3001126 | SCOP2B (2022-06-29) |
Z [auth NH] | SCOP2B Superfamily | PUA domain-like | 8032383 | 3001015 | SCOP2B (2022-06-29) |
GA [auth SA] | SCOP2B Superfamily | 60S ribosomal protein L4 C-terminal domain-like | 8052831 | 3002143 | SCOP2B (2022-06-29) |
GA [auth SA] | SCOP2B Superfamily | Ribosomal protein L4 | 8052832 | 3001146 | SCOP2B (2022-06-29) |
HA [auth SC] | SCOP2B Superfamily | Translation proteins SH3-like KOW motif containing domain | 8053100 | 3000334 | SCOP2B (2022-06-29) |
IA [auth SD] | SCOP2B Superfamily | Ribosomal protein L30p/L7e | 8052923 | 3001378 | SCOP2B (2022-06-29) |
IA [auth SD] | SCOP2B Superfamily | Ribosomal L30p/L7e protein N-terminal domain-lke | 8052922 | 3002152 | SCOP2B (2022-06-29) |
KA [auth SG] | SCOP2B Superfamily | Ribosomal protein L6 | 8033688 | 3000724 | SCOP2B (2022-06-29) |
OA [auth SK] | SCOP2B Superfamily | Pentein | 8098764 | 3000640 | SCOP2B (2022-06-29) |
QA [auth SM] | SCOP2B Superfamily | BRCT domain-like | 8092279 | 3000159 | SCOP2B (2022-06-29) |
YA [auth SW] | SCOP2B Superfamily | RecA-like P-loop NTPases | 8079240 | 3002019 | SCOP2B (2022-06-29) |
Domain Annotation: ECOD Classification ECOD Database Homepage
Chains | Family Name | Domain Identifier | Architecture | Possible Homology | Homology | Topology | Family | Provenance Source (Version) |
---|---|---|---|---|---|---|---|---|
A [auth BA] | PF00298 | e8fktBA2 | A: alpha arrays | X: HTH | H: HTH | T: Ribosomal protein L11, C-terminal domain | F: PF00298 | ECOD (1.6) |
A [auth BA] | PF03946 | e8fktBA1 | A: a+b two layers | X: Ribosomal protein L11/L12e N-terminal domain-like | H: Ribosomal protein L11/L12e N-terminal domain (From Topology) | T: Ribosomal protein L11/L12e N-terminal domain | F: PF03946 | ECOD (1.6) |
B [auth BB] | PF00687 | e8fktBB2 | A: a+b two layers | X: a+b domain in Ribosomal protein L1 (From Topology) | H: a+b domain in Ribosomal protein L1 (From Topology) | T: a+b domain in Ribosomal protein L1 | F: PF00687 | ECOD (1.6) |
B [auth BB] | PF00687 | e8fktBB1 | A: a/b three-layered sandwiches | X: Flavodoxin-like | H: Rossmann-like domain in Ribosomal protein L1 (From Topology) | T: Rossmann-like domain in Ribosomal protein L1 | F: PF00687 | ECOD (1.6) |
F [auth L6] | PF01294 | e8fktL61 | A: extended segments | X: RPL13 (From Topology) | H: RPL13 (From Topology) | T: RPL13 | F: PF01294 | ECOD (1.6) |
G [auth L7] | PF00572 | e8fktL71 | A: a/b three-layered sandwiches | X: Ribosomal protein L13/L15p/L18e/L32e | H: Ribosomal protein L13 and L16-A (From Topology) | T: Ribosomal protein L13 and L16-A | F: PF00572 | ECOD (1.6) |
H [auth L8] | PF00467,PF01929 | e8fktL81 | A: beta barrels | X: SH3 | H: SH3 | T: SH3 | F: PF00467,PF01929 | ECOD (1.6) |
I [auth L9] | PF00827 | e8fktL91 | A: a+b two layers | X: Alpha-beta plaits | H: Ribosomal proteins S24e, L23 and L15e (From Topology) | T: Ribosomal proteins S24e, L23 and L15e | F: PF00827 | ECOD (1.6) |
J [auth LA] | PF00237 | e8fktLA1 | A: a+b two layers | X: Enolase-N/ribosomal protein | H: Ribosomal protein L22 (From Topology) | T: Ribosomal protein L22 | F: PF00237 | ECOD (1.6) |
K [auth LB] | PF17135 | e8fktLB1 | A: a/b three-layered sandwiches | X: Ribosomal protein L13/L15p/L18e/L32e | H: Ribosomal proteins L15p and L18e (From Topology) | T: Ribosomal proteins L15p and L18e | F: PF17135 | ECOD (1.6) |
L [auth LC] | F_UNCLASSIFIED | e8fktLC2 | A: a+b two layers | X: GP2-like | H: RplX-like (From Topology) | T: RplX-like | F: F_UNCLASSIFIED | ECOD (1.6) |
L [auth LC] | PF01775 | e8fktLC1 | A: a+b two layers | X: GP2-like | H: RplX-like (From Topology) | T: RplX-like | F: PF01775 | ECOD (1.6) |
M [auth LE] | PF01157 | e8fktLE1 | A: beta barrels | X: SH3 | H: SH3 | T: SH3 | F: PF01157 | ECOD (1.6) |
N [auth LG] | PF00238 | e8fktLG1 | A: beta barrels | X: Ribosomal protein L14-like | H: Ribosomal protein L14-related (From Topology) | T: Ribosomal protein L14-related | F: PF00238 | ECOD (1.6) |
O [auth LH] | PF00276,PF03939 | e8fktLH1 | A: a+b two layers | X: Alpha-beta plaits | H: Ribosomal proteins S24e, L23 and L15e (From Topology) | T: Ribosomal proteins S24e, L23 and L15e | F: PF00276,PF03939 | ECOD (1.6) |
P [auth LI] | PF16906 | e8fktLI1 | A: beta barrels | X: SH3 | H: SH3 | T: SH3 | F: PF16906 | ECOD (1.6) |
Q [auth LK] | PF00828 | e8fktLK1 | A: a/b three-layered sandwiches | X: Ribosomal protein L13/L15p/L18e/L32e | H: Ribosomal proteins L15p and L18e (From Topology) | T: Ribosomal proteins L15p and L18e | F: PF00828 | ECOD (1.6) |
R [auth LN] | PF00297 | e8fktLN1 | A: beta barrels | X: cradle loop barrel | H: RIFT-related | T: Alanine racemase-C | F: PF00297 | ECOD (1.6) |
S [auth LQ] | PF01655 | e8fktLQ1 | A: a/b three-layered sandwiches | X: Ribosomal protein L13/L15p/L18e/L32e | H: Ribosomal protein L32e (From Topology) | T: Ribosomal protein L32e | F: PF01655 | ECOD (1.6) |
T [auth LS] | PF00831 | e8fktLS1 | A: alpha bundles | X: Long alpha-hairpin | H: Ribosomal protein L29 (L29p) (From Topology) | T: Ribosomal protein L29 (L29p) | F: PF00831 | ECOD (1.6) |
U [auth LT] | PF01247 | e8fktLT1 | A: beta barrels | X: cradle loop barrel | H: RIFT-related | T: Alanine racemase-C | F: PF01247 | ECOD (1.6) |
V [auth LU] | PF01158 | e8fktLU1 | A: alpha arrays | X: 60S ribosomal protein rpL36 (L36e) (From Topology) | H: 60S ribosomal protein rpL36 (L36e) (From Topology) | T: 60S ribosomal protein rpL36 (L36e) | F: PF01158 | ECOD (1.6) |
W [auth LW] | PF01907 | e8fktLW1 | A: few secondary structure elements | X: Rubredoxin-like | H: Rubredoxin-related | T: Rubredoxin-related | F: PF01907 | ECOD (1.6) |
Z [auth NH] | PF03657 | e8fktNH1 | A: beta barrels | X: cradle loop barrel | H: RIFT-related | T: PUA domain | F: PF03657 | ECOD (1.6) |
Z [auth NH] | PF17833 | e8fktNH2 | A: a+b two layers | X: Cystatin-like | H: Pre-PUA domain (From Topology) | T: Pre-PUA domain | F: PF17833 | ECOD (1.6) |
EA [auth NQ] | F_UNCLASSIFIED | e8fktNQ1 | A: beta duplicates or obligate multimers | X: beta-propeller-like | H: beta-propeller | T: 8-bladed | F: F_UNCLASSIFIED | ECOD (1.6) |
GA [auth SA] | PF00573 | e8fktSA2 | A: a/b three-layered sandwiches | X: Ribosomal protein L4 (From Topology) | H: Ribosomal protein L4 (From Topology) | T: Ribosomal protein L4 | F: PF00573 | ECOD (1.6) |
GA [auth SA] | PF14374 | e8fktSA1 | A: extended segments | X: C-terminal helical region in 60S ribosomal protein L4 (L4p) (From Topology) | H: C-terminal helical region in 60S ribosomal protein L4 (L4p) (From Topology) | T: C-terminal helical region in 60S ribosomal protein L4 (L4p) | F: PF14374 | ECOD (1.6) |
HA [auth SC] | PF01159,PF03868 | e8fktSC1 | A: beta barrels | X: SH3 | H: SH3 | T: SH3 | F: PF01159,PF03868 | ECOD (1.6) |
IA [auth SD] | PF00327,PF08079 | e8fktSD1 | A: a+b two layers | X: Ribosomal protein L30p/L7e (From Topology) | H: Ribosomal protein L30p/L7e (From Topology) | T: Ribosomal protein L30p/L7e | F: PF00327,PF08079 | ECOD (1.6) |
JA [auth SE] | PF01248 | e8fktSE1 | A: a+b three layers | X: Bacillus chorismate mutase-like | H: L30e-like (From Topology) | T: L30e-like | F: PF01248 | ECOD (1.6) |
KA [auth SG] | PF00347 | e8fktSG1 | A: a+b two layers | X: Ribosomal protein L6 (From Topology) | H: Ribosomal protein L6 (From Topology) | T: Ribosomal protein L6 | F: PF00347 | ECOD (1.6) |
MA [auth SI] | PF00327,PF08079 | e8fktSI1 | A: a+b two layers | X: Ribosomal protein L30p/L7e (From Topology) | H: Ribosomal protein L30p/L7e (From Topology) | T: Ribosomal protein L30p/L7e | F: PF00327,PF08079 | ECOD (1.6) |
OA [auth SK] | PF01912 | e8fktSK1 | A: a+b duplicates or obligate multimers | X: Pentein (From Topology) | H: Pentein (From Topology) | T: Pentein | F: PF01912 | ECOD (1.6) |
PA [auth SL] | PF00687 | e8fktSL2 | A: a+b two layers | X: a+b domain in Ribosomal protein L1 (From Topology) | H: a+b domain in Ribosomal protein L1 (From Topology) | T: a+b domain in Ribosomal protein L1 | F: PF00687 | ECOD (1.6) |
PA [auth SL] | PF00687 | e8fktSL1 | A: a/b three-layered sandwiches | X: Flavodoxin-like | H: Rossmann-like domain in Ribosomal protein L1 (From Topology) | T: Rossmann-like domain in Ribosomal protein L1 | F: PF00687 | ECOD (1.6) |
TA [auth SQ] | PF00466 | e8fktSQ1 | A: a+b two layers | X: Alpha-beta plaits | H: Ribosomal protein L10-like (From Topology) | T: Ribosomal protein L10-like | F: PF00466 | ECOD (1.6) |
TA [auth SQ] | PF17777 | e8fktSQ2 | A: a+b two layers | X: Insertion domain in 60S ribosomal protein rpP0 (L10P) (From Topology) | H: Insertion domain in 60S ribosomal protein rpP0 (L10P) (From Topology) | T: Insertion domain in 60S ribosomal protein rpP0 (L10P) | F: PF17777 | ECOD (1.6) |
YA [auth SW] | PF13959 | e8fktSW3 | A: alpha duplicates or obligate multimers | X: RNA helicase Hera dimerization domain (From Topology) | H: RNA helicase Hera dimerization domain (From Topology) | T: RNA helicase Hera dimerization domain | F: PF13959 | ECOD (1.6) |
YA [auth SW] | PF00270 | e8fktSW2 | A: a/b three-layered sandwiches | X: P-loop domains-like | H: P-loop domains-related | T: P-loop containing nucleoside triphosphate hydrolases | F: PF00270 | ECOD (1.6) |
YA [auth SW] | PF00271 | e8fktSW1 | A: a/b three-layered sandwiches | X: P-loop domains-like | H: P-loop domains-related | T: P-loop containing nucleoside triphosphate hydrolases | F: PF00271 | ECOD (1.6) |
Protein Family Annotation Pfam Database Homepage
Chains | Accession | Name | Description | Comments | Source |
---|---|---|---|---|---|
A [auth BA] | PF03946 | Ribosomal protein L11, N-terminal domain (Ribosomal_L11_N) | Ribosomal protein L11, N-terminal domain | The N-terminal domain of Ribosomal protein L11 adopts an alpha/beta fold and is followed by the RNA binding C-terminal domain. | Domain |
A [auth BA] | PF00298 | Ribosomal protein L11, RNA binding domain (Ribosomal_L11) | Ribosomal protein L11, RNA binding domain | - | Domain |
B [auth BB] | PF00687 | Ribosomal protein L1p/L10e family (Ribosomal_L1) | Ribosomal protein L1p/L10e family | This family includes prokaryotic L1 and eukaryotic L10. | Domain |
H [auth L8] | PF01929 | Ribosomal protein L14 (Ribosomal_L14e) | Ribosomal protein L14 | - | Family |
I [auth L9] | PF00827 | Ribosomal L15 (Ribosomal_L15e) | Ribosomal L15 | - | Family |
J [auth LA] | PF00237 | Ribosomal protein L22p/L17e (Ribosomal_L22) | Ribosomal protein L22p/L17e | This family includes L22 from prokaryotes and chloroplasts and L17 from eukaryotes. | Domain |
K [auth LB] | PF17135 | Ribosomal protein 60S L18 and 50S L18e (Ribosomal_L18) | Ribosomal protein 60S L18 and 50S L18e | - | Family |
L [auth LC] | PF01775 | Ribosomal proteins 50S-L18Ae/60S-L20/60S-L18A (Ribosomal_L18A) | Ribosomal proteins 50S-L18Ae/60S-L20/60S-L18A | This family includes: archaeal 50S ribosomal protein L18Ae, often referred to as L20e or LX; fungal 60S ribosomal protein L20; and higher eukaryote 60S ribosomal protein L18A. | Domain |
N [auth LG] | PF00238 | Ribosomal protein L14p/L23e (Ribosomal_L14) | Ribosomal protein L14p/L23e | - | Domain |
O [auth LH] | PF03939 | Ribosomal protein L23, N-terminal domain (Ribosomal_L23eN) | Ribosomal protein L23, N-terminal domain | - | Family |
O [auth LH] | PF00276 | Ribosomal protein L23 (Ribosomal_L23) | Ribosomal protein L23 | - | Family |
P [auth LI] | PF16906 | Ribosomal proteins L26 eukaryotic, L24P archaeal (Ribosomal_L26) | Ribosomal proteins L26 eukaryotic, L24P archaeal | - | Family |
P [auth LI] | PF00467 | KOW motif (KOW) | KOW motif | - | Family |
Q [auth LK] | PF00828 | Ribosomal proteins 50S-L15, 50S-L18e, 60S-L27A (Ribosomal_L27A) | Ribosomal proteins 50S-L15, 50S-L18e, 60S-L27A | - | Family |
S [auth LQ] | PF01655 | Ribosomal protein L32 (Ribosomal_L32e) | Ribosomal protein L32 | - | Family |
T [auth LS] | PF00831 | Ribosomal L29 protein (Ribosomal_L29) | Ribosomal L29 protein | - | Family |
U [auth LT] | PF01247 | Ribosomal protein L35Ae (Ribosomal_L35Ae) | Ribosomal protein L35Ae | - | Domain |
V [auth LU] | PF01158 | Ribosomal protein L36e (Ribosomal_L36e) | Ribosomal protein L36e | - | Family |
X [auth NB] | PF01926 | 50S ribosome-binding GTPase (MMR_HSR1) | 50S ribosome-binding GTPase | - | Family |
X [auth NB] | PF08701 | GNL3L/Grn1 putative GTPase (GN3L_Grn1) | GNL3L/Grn1 putative GTPase | - | Family |
Y [auth NF] | PF01201 | Ribosomal protein S8e (Ribosomal_S8e) | Ribosomal protein S8e | - | Family |
Z [auth NH] | PF03657 | UPF0113 PUA domain (UPF0113) | UPF0113 PUA domain | - | Domain |
Z [auth NH] | PF17833 | UPF0113 Pre-PUA domain (UPF0113_N) | UPF0113 Pre-PUA domain | - | Domain |
AA [auth NI] | PF08147 | DBP10CT (NUC160) domain (DBP10CT) | DBP10CT (NUC160) domain | This C terminal domain is found in the Dbp10p subfamily of hypothetical RNA helicases [1]. | Domain |
AA [auth NI] | PF00270 | DEAD/DEAH box helicase (DEAD) | DEAD/DEAH box helicase | Members of this family include the DEAD and DEAH box helicases. Helicases are involved in unwinding nucleic acids. The DEAD box helicases are involved in various aspects of RNA metabolism, including nuclear transcription, pre mRNA splicing, ribosome ... | Domain |
AA [auth NI] | PF00271 | Helicase conserved C-terminal domain (Helicase_C) | Helicase conserved C-terminal domain | The Prosite family is restricted to DEAD/H helicases, whereas this domain family is found in a wide variety of helicases and helicase related proteins. It may be that this is not an autonomously folding unit, but an integral part of the helicase. | Domain |
BA [auth NK] | PF10169 | LLP homolog (LLPH) | LLP homolog | - | Family |
CA [auth NM] | PF01778 | Ribosomal L28e protein family (Ribosomal_L28e) | Ribosomal L28e protein family | - | Family |
CA [auth NM] | PF04874 | Mak16 protein C-terminal region (Mak16) | Mak16 protein C-terminal region | - | Family |
DA [auth NO] | PF05997 | Nucleolar protein,Nop52 (Nop52) | Nucleolar protein,Nop52 | - | Family |
EA [auth NQ] | PF00400 | WD domain, G-beta repeat (WD40) | WD domain, G-beta repeat | - | Repeat |
FA [auth NS] | PF04427 | Brix domain (Brix) | Brix domain | - | Domain |
GA [auth SA] | PF14374 | 60S ribosomal protein L4 C-terminal domain (Ribos_L4_asso_C) | 60S ribosomal protein L4 C-terminal domain | This family is found at the very C-terminal of 60 ribosomal L4 proteins. | Domain |
GA [auth SA] | PF00573 | Ribosomal protein L4/L1 family (Ribosomal_L4) | Ribosomal protein L4/L1 family | - | Family |
HA [auth SC] | PF01159 | Ribosomal protein L6e (Ribosomal_L6e) | Ribosomal protein L6e | - | Family |
IA [auth SD] | PF08079 | Ribosomal L30 N-terminal domain (Ribosomal_L30_N) | Ribosomal L30 N-terminal domain | This presumed domain is found at the N-terminus of Ribosomal L30 proteins and has been termed RL30NT or NUC018 [1]. | Domain |
IA [auth SD] | PF00327 | Ribosomal protein L30p/L7e (Ribosomal_L30) | Ribosomal protein L30p/L7e | This family includes prokaryotic L30 and eukaryotic L7. | Domain |
JA [auth SE] | PF01248 | Ribosomal protein L7Ae/L30e/S12e/Gadd45 family (Ribosomal_L7Ae) | Ribosomal protein L7Ae/L30e/S12e/Gadd45 family | This family includes: Ribosomal L7A from metazoa, Ribosomal L8-A and L8-B from fungi, 30S ribosomal protein HS6 from archaebacteria, 40S ribosomal protein S12 from eukaryotes, Ribosomal protein L30 from eukaryotes and archaebacteria. Gadd45 and MyD11 ... | Domain |
KA [auth SG] | PF00347 | Ribosomal protein L6 (Ribosomal_L6) | Ribosomal protein L6 | - | Domain |
LA [auth SH] | PF00076 | RNA recognition motif (RRM_1) | RNA recognition motif | The RRM motif (a.k.a. RRM, RBD, or RNP domain) is probably diagnostic of an RNA binding protein. RRMs are found in a variety of RNA binding proteins, including various hnRNP proteins, proteins implicated in regulation of alternative splicing, and pro ... | Domain |
MA [auth SI] | PF08079 | Ribosomal L30 N-terminal domain (Ribosomal_L30_N) | Ribosomal L30 N-terminal domain | This presumed domain is found at the N-terminus of Ribosomal L30 proteins and has been termed RL30NT or NUC018 [1]. | Domain |
MA [auth SI] | PF00327 | Ribosomal protein L30p/L7e (Ribosomal_L30) | Ribosomal protein L30p/L7e | This family includes prokaryotic L30 and eukaryotic L7. | Domain |
OA [auth SK] | PF01912 | eIF-6 family (eIF-6) | eIF-6 family | - | Family |
PA [auth SL] | PF00687 | Ribosomal protein L1p/L10e family (Ribosomal_L1) | Ribosomal protein L1p/L10e family | This family includes prokaryotic L1 and eukaryotic L10. | Domain |
QA [auth SM] | PF16589 | BRCT domain, a BRCA1 C-terminus domain (BRCT_2) | BRCT domain, a BRCA1 C-terminus domain | - | Family |
RA [auth SN] | PF05890 | Eukaryotic rRNA processing protein EBP2 (Ebp2) | Eukaryotic rRNA processing protein EBP2 | - | Family |
SA [auth SO] | PF04427 | Brix domain (Brix) | Brix domain | - | Domain |
TA [auth SQ] | PF17777 | Insertion domain in 60S ribosomal protein L10P (RL10P_insert) | Insertion domain in 60S ribosomal protein L10P | This domain is found in prokaryotic and archaeal ribosomal L10 protein [1]. | Domain |
TA [auth SQ] | PF00466 | Ribosomal protein L10 (Ribosomal_L10) | Ribosomal protein L10 | - | Family |
UA [auth SR] | PF08155 | NOGCT (NUC087) domain (NOGCT) | NOGCT (NUC087) domain | This C terminal domain is found in the NOG subfamily of nucleolar GTP-binding proteins [1]. | Domain |
UA [auth SR] | PF06858 | Nucleolar GTP-binding protein 1 (NOG1) (NOG1) | Nucleolar GTP-binding protein 1 (NOG1) | - | Family |
UA [auth SR] | PF17835 | NOG1 N-terminal helical domain (NOG1_N) | NOG1 N-terminal helical domain | This domain is found at the N-terminus of NOG1 GTPase proteins. | Domain |
VA [auth SS] | PF08145 | BOP1NT (NUC169) domain (BOP1NT) | BOP1NT (NUC169) domain | This N terminal domain is found in BOP1-like WD40 proteins [1]. | Domain |
XA [auth SV] | PF01246 | Ribosomal protein L24e (Ribosomal_L24e) | Ribosomal protein L24e | - | Domain |
YA [auth SW] | PF00270 | DEAD/DEAH box helicase (DEAD) | DEAD/DEAH box helicase | Members of this family include the DEAD and DEAH box helicases. Helicases are involved in unwinding nucleic acids. The DEAD box helicases are involved in various aspects of RNA metabolism, including nuclear transcription, pre mRNA splicing, ribosome ... | Domain |
YA [auth SW] | PF13959 | Domain of unknown function (DUF4217) (DUF4217) | Domain of unknown function (DUF4217) | This short domain is found at the C-terminus of many helicase proteins. | Domain |
YA [auth SW] | PF00271 | Helicase conserved C-terminal domain (Helicase_C) | Helicase conserved C-terminal domain | The Prosite family is restricted to DEAD/H helicases, whereas this domain family is found in a wide variety of helicases and helicase related proteins. It may be that this is not an autonomously folding unit, but an integral part of the helicase. | Domain |
ZA [auth SY] | PF17125 | N-terminal domain of 16S rRNA methyltransferase RsmF (Methyltr_RsmF_N) | N-terminal domain of 16S rRNA methyltransferase RsmF | This is the N-terminal domain of the RsmF methyl transferase. RsmF is a multi-site-specific methyltransferase that is responsible for the synthesis of three modifications on cytidines in 16S ribosomal RNA. The N-terminus is critical for stabilising t ... | Domain |
ZA [auth SY] | PF01189 | 16S rRNA methyltransferase RsmB/F (Methyltr_RsmB-F) | 16S rRNA methyltransferase RsmB/F | - | Family |
AB [auth SZ] | PF09420 | Ribosome biogenesis protein Nop16 (Nop16) | Ribosome biogenesis protein Nop16 | - | Family |
Gene Ontology: Gene Product Annotation Gene Ontology Database Homepage
InterPro: Protein Family Classification InterPro Database Homepage
Pharos: Disease Associations Pharos Homepage Annotation
Protein Modification Annotation
Modified Residue(s) | ||
---|---|---|
Chain | Residue(s) | Description |
R [auth LN] | HIC | Parent Component: HIS :  AA0317 :  1'-methyl-L-histidine MOD:00322 |
CA [auth NM] | AME | Parent Component: MET :  AA0317 |
VA [auth SS] | SEP | Parent Component: SER :  AA0317 , AA0037 :  1'-methyl-L-histidine MOD:00322 , O-phospho-L-serine MOD:00046 |