8FJL | pdb_00008fjl

Golden Shiner Reovirus Core Tropical Vertex

External Resource: Annotation

Domain Annotation: ECOD Classification
Protein Family Annotation
Gene Ontology: Gene Product Annotation
InterPro: Protein Family Classification

Domain Annotation: ECOD Classification ECOD Database Homepage

Chains	Family Name	Domain Identifier	Architecture	Possible Homology	Homology	Topology	Family	Provenance Source (Version)
X	MotA_ExbB	e8fjlX1	A: beta barrels	X: RNase A-like	H: Cytochrome P450	T: Cytochrome P450	F: MotA_ExbB	ECOD (v294.2)
W	MotA_ExbB	e8fjlW1	A: beta barrels	X: RNase A-like	H: Cytochrome P450	T: Cytochrome P450	F: MotA_ExbB	ECOD (v294.2)
V	MotA_ExbB	e8fjlV1	A: beta barrels	X: RNase A-like	H: Cytochrome P450	T: Cytochrome P450	F: MotA_ExbB	ECOD (v294.2)
NA [auth n]	MotA_ExbB	e8fjln1	A: beta barrels	X: RNase A-like	H: Cytochrome P450	T: Cytochrome P450	F: MotA_ExbB	ECOD (v294.2)
HA [auth h]	MotA_ExbB	e8fjlh1	A: beta barrels	X: RNase A-like	H: Cytochrome P450	T: Cytochrome P450	F: MotA_ExbB	ECOD (v294.2)
GA [auth g]	MotA_ExbB	e8fjlg1	A: beta barrels	X: RNase A-like	H: Cytochrome P450	T: Cytochrome P450	F: MotA_ExbB	ECOD (v294.2)
EA [auth e]	MotA_ExbB	e8fjle1	A: beta barrels	X: RNase A-like	H: Cytochrome P450	T: Cytochrome P450	F: MotA_ExbB	ECOD (v294.2)
DA [auth d]	MotA_ExbB	e8fjld1	A: beta barrels	X: RNase A-like	H: Cytochrome P450	T: Cytochrome P450	F: MotA_ExbB	ECOD (v294.2)
BA [auth b]	MotA_ExbB	e8fjlb1	A: beta barrels	X: RNase A-like	H: Cytochrome P450	T: Cytochrome P450	F: MotA_ExbB	ECOD (v294.2)
AA [auth a]	MotA_ExbB	e8fjla1	A: beta barrels	X: RNase A-like	H: Cytochrome P450	T: Cytochrome P450	F: MotA_ExbB	ECOD (v294.2)
M	MotA_ExbB	e8fjlM1	A: beta barrels	X: RNase A-like	H: Cytochrome P450	T: Cytochrome P450	F: MotA_ExbB	ECOD (v294.2)
L	MotA_ExbB	e8fjlL1	A: beta barrels	X: RNase A-like	H: Cytochrome P450	T: Cytochrome P450	F: MotA_ExbB	ECOD (v294.2)
J	MotA_ExbB	e8fjlJ1	A: beta barrels	X: RNase A-like	H: Cytochrome P450	T: Cytochrome P450	F: MotA_ExbB	ECOD (v294.2)
I	MotA_ExbB	e8fjlI1	A: beta barrels	X: RNase A-like	H: Cytochrome P450	T: Cytochrome P450	F: MotA_ExbB	ECOD (v294.2)
H	zf-C2H2_6	e8fjlH1	A: beta barrels	X: RNase A-like	H: Cytochrome P450	T: Cytochrome P450	F: zf-C2H2_6	ECOD (v294.2)
F	zf-C2H2_6	e8fjlF1	A: beta barrels	X: RNase A-like	H: Cytochrome P450	T: Cytochrome P450	F: zf-C2H2_6	ECOD (v294.2)
D	zf-C2H2_6	e8fjlD1	A: beta barrels	X: RNase A-like	H: Cytochrome P450	T: Cytochrome P450	F: zf-C2H2_6	ECOD (v294.2)
C	zf-C2H2_6	e8fjlC1	A: beta barrels	X: RNase A-like	H: Cytochrome P450	T: Cytochrome P450	F: zf-C2H2_6	ECOD (v294.2)
Z	MotA_ExbB	e8fjlZ1	A: beta barrels	X: RNase A-like	H: Cytochrome P450	T: Cytochrome P450	F: MotA_ExbB	ECOD (v294.2)
Y	MotA_ExbB	e8fjlY1	A: beta barrels	X: RNase A-like	H: Cytochrome P450	T: Cytochrome P450	F: MotA_ExbB	ECOD (v294.2)
IA [auth i]	MotA_ExbB	e8fjli1	A: beta barrels	X: RNase A-like	H: Cytochrome P450	T: Cytochrome P450	F: MotA_ExbB	ECOD (v294.2)
FA [auth f]	MotA_ExbB	e8fjlf1	A: beta barrels	X: RNase A-like	H: Cytochrome P450	T: Cytochrome P450	F: MotA_ExbB	ECOD (v294.2)
CA [auth c]	MotA_ExbB	e8fjlc1	A: beta barrels	X: RNase A-like	H: Cytochrome P450	T: Cytochrome P450	F: MotA_ExbB	ECOD (v294.2)
A	zf-C2H2_6	e8fjlA1	A: beta barrels	X: RNase A-like	H: Cytochrome P450	T: Cytochrome P450	F: zf-C2H2_6	ECOD (v294.2)

Protein Family Annotation Pfam Database Homepage

Chains	Accession	Name	Description	Comments	Source
AA [auth a], BA [auth b], DA [auth d], EA [auth e], GA [auth g], AA [auth a], BA [auth b], DA [auth d], EA [auth e], GA [auth g], HA [auth h], NA [auth n], V, W, X	PF03084	Reoviral Sigma1/Sigma2 family (Sigma_1_2)	Reoviral Sigma1/Sigma2 family	-	Family
C, D, E, F, G C, D, E, F, G, H, I, J, K, L	PF13912	C2H2-type zinc finger (zf-C2H2_6)	C2H2-type zinc finger		Domain
C, D, E, F, G C, D, E, F, G, H, I, J, K, L	PF21063	Reovirus core-spike protein lambda-2 (L2), GTase domain (Reovirus_L2_GTase)	Reovirus core-spike protein lambda-2 (L2), GTase domain	Reovirus core-spike protein VP1/lambda-2 (VP1/L2) forms a pentamer that mediates enzymatic reactions in 5' capping of the viral plus-strand transcripts [1]. It forms a hollow cylinder with projecting turrets. Each VP1/L2 monomer consists of eight dom ...	Reovirus core-spike protein VP1/lambda-2 (VP1/L2) forms a pentamer that mediates enzymatic reactions in 5' capping of the viral plus-strand transcripts [1]. It forms a hollow cylinder with projecting turrets. Each VP1/L2 monomer consists of eight domains with the most N-terminal domain at the base of the turret and the most C-terminal domain at the top. This entry represents the second one, which contains the nucleotide-binding histidine triad (HIT)-like motif from the GTase (guanylyltransferase) domain [2].	Domain
C, D, E, F, G C, D, E, F, G, H, I, J, K, L	PF21066	Reovirus core-spike protein lambda-2 (L2), methyltransferase-2 (Reovirus_L2_MT2)	Reovirus core-spike protein lambda-2 (L2), methyltransferase-2	Reovirus core-spike protein VP1/lambda-2 (VP1/L2) forms a pentamer that mediates enzymatic reactions in 5' capping of the viral plus-strand transcripts [1]. It forms a hollow cylinder with projecting turrets. Each VP1/L2 monomer consists of eight dom ...	Reovirus core-spike protein VP1/lambda-2 (VP1/L2) forms a pentamer that mediates enzymatic reactions in 5' capping of the viral plus-strand transcripts [1]. It forms a hollow cylinder with projecting turrets. Each VP1/L2 monomer consists of eight domains with the most N-terminal domain at the base of the turret and the most C-terminal domain at the top. This entry represents the second methyltransferase domain (MT2), which catalyses the last reaction, 2'O-methylation [2].	Domain
C, D, E, F, G C, D, E, F, G, H, I, J, K, L	PF22033	Inner capsid protein lambda-1/VP3 (Lamba1_VP3)	Inner capsid protein lambda-1/VP3	The reovirus inner capsid protein lambda-1 displays nucleoside triphosphate phosphohydrolase (NTPase),RNA-5'-triphosphatase (RTPase), and RNA helicase activity and may play a role in the transcription of the virus genome, the unwinding or reannealing ...	The reovirus inner capsid protein lambda-1 displays nucleoside triphosphate phosphohydrolase (NTPase),RNA-5'-triphosphatase (RTPase), and RNA helicase activity and may play a role in the transcription of the virus genome, the unwinding or reannealing of double-stranded RNA during RNA synthesis. Lambda1 is an Orthoreovirus core protein, VP3 is the homologous core protein in Aquareoviruses [1-4].	Domain
C, D, E, F, G C, D, E, F, G, H, I, J, K, L	PF21065	Reovirus core-spike protein lambda-2 (L2), methyltransferase-1 (Reovirus_L2_MT1)	Reovirus core-spike protein lambda-2 (L2), methyltransferase-1	Reovirus core-spike protein VP1/lambda-2 (VP1/L2) forms a pentamer that mediates enzymatic reactions in 5' capping of the viral plus-strand transcripts [1]. It forms a hollow cylinder with projecting turrets. Each VP1/L2 monomer consists of eight dom ...	Reovirus core-spike protein VP1/lambda-2 (VP1/L2) forms a pentamer that mediates enzymatic reactions in 5' capping of the viral plus-strand transcripts [1]. It forms a hollow cylinder with projecting turrets. Each VP1/L2 monomer consists of eight domains with the most N-terminal domain at the base of the turret and the most C-terminal domain at the top. This entry represents the methyltransferase-1 domain [2] which adds a methyl group to the N7 of the guanosine added by the GTase [2].	Domain
C, D, E, F, G C, D, E, F, G, H, I, J, K, L	PF21060	Reovirus core-spike protein lambda-2 (L2), 6th domain (Reovirus_L2_6th)	Reovirus core-spike protein lambda-2 (L2), 6th domain	Reovirus core-spike protein VP1/lambda-2 (VP1/L2) forms a pentamer that mediates enzymatic reactions in 5' capping of the viral plus-strand transcripts [1]. It forms a hollow cylinder with projecting turrets. Each VP1/L2 monomer consists of eight dom ...	Reovirus core-spike protein VP1/lambda-2 (VP1/L2) forms a pentamer that mediates enzymatic reactions in 5' capping of the viral plus-strand transcripts [1]. It forms a hollow cylinder with projecting turrets. Each VP1/L2 monomer consists of eight domains with the most N-terminal domain at the base of the turret and the most C-terminal domain at the top. This entry represents the sixth domain which, together with the seventh and eighth (Pfam:PF06016) domains forms a three-domain flap at the top of the turret, that may serve as a gate to retard exit of the 5' terminus of the mRNA [2]. This domain has a Ig-like fold, resembling the V of an antibody light chain [2].	Domain
C, D, E, F, G C, D, E, F, G, H, I, J, K, L	PF21062	Reovirus core-spike protein lambda-2 (L2), ferredoxin-like domain (Reovirus_L2_4th)	Reovirus core-spike protein lambda-2 (L2), ferredoxin-like domain	Reovirus core-spike protein VP1/lambda-2 (VP1/L2) forms a pentamer that mediates enzymatic reactions in 5' capping of the viral plus-strand transcripts [1]. It forms a hollow cylinder with projecting turrets. Each VP1/L2 monomer consists of eight dom ...	Reovirus core-spike protein VP1/lambda-2 (VP1/L2) forms a pentamer that mediates enzymatic reactions in 5' capping of the viral plus-strand transcripts [1]. It forms a hollow cylinder with projecting turrets. Each VP1/L2 monomer consists of eight domains with the most N-terminal domain at the base of the turret and the most C-terminal domain at the top. This entry represents the fourth domain, which adopts a ferredoxin-like fold consisting of four beta-strands protected by alpha-helices that probably functions as a structural support for the three enzyme domains (two methyltransferase and GTase domains) [2].	Domain
C, D, E, F, G C, D, E, F, G, H, I, J, K, L	PF21061	Reovirus core-spike protein lambda-2 (L2), 7th domain (Reovirus_L2_7th)	Reovirus core-spike protein lambda-2 (L2), 7th domain	Reovirus core-spike protein VP1/lambda-2 (VP1/L2) forms a pentamer that mediates enzymatic reactions in 5' capping of the viral plus-strand transcripts [1]. It forms a hollow cylinder with projecting turrets. Each VP1/L2 monomer consists of eight dom ...	Reovirus core-spike protein VP1/lambda-2 (VP1/L2) forms a pentamer that mediates enzymatic reactions in 5' capping of the viral plus-strand transcripts [1]. It forms a hollow cylinder with projecting turrets. Each VP1/L2 monomer consists of eight domains with the most N-terminal domain at the base of the turret and the most C-terminal domain at the top. This entry represents the seventh domain which, together with the sixth (Pfam:PF21060) and eighth (Pfam:PF06016) domains forms a three-domain flap at the top of the turret, that may serve as a gate to retard exit of the 5' terminus of the mRNA [2]. This domain has a Ig-like fold, resembling the C region of an antibody light chain [2].	Domain
B	PF07781	Reovirus minor core protein Mu-2 (Reovirus_Mu2)	Reovirus minor core protein Mu-2	-	Family
B	PF03084	Reoviral Sigma1/Sigma2 family (Sigma_1_2)	Reoviral Sigma1/Sigma2 family	-	Family
CA [auth c], FA [auth f], IA [auth i], Y, Z	PF21064	Reovirus core-spike protein lambda-2 (L2), N-terminal (Reovirus_L2_N)	Reovirus core-spike protein lambda-2 (L2), N-terminal	Reovirus core-spike protein VP1/lambda-2 (VP1/L2) forms a pentamer that mediates enzymatic reactions in 5' capping of the viral plus-strand transcripts [1]. It forms a hollow cylinder with projecting turrets. Each VP1/L2 monomer consists of eight dom ...	Reovirus core-spike protein VP1/lambda-2 (VP1/L2) forms a pentamer that mediates enzymatic reactions in 5' capping of the viral plus-strand transcripts [1]. It forms a hollow cylinder with projecting turrets. Each VP1/L2 monomer consists of eight domains with the most N-terminal domain at the base of the turret and the most C-terminal domain at the top [2]. This entry represents the N-terminal domain which adopts an alpha/beta topology.	Domain
CA [auth c], FA [auth f], IA [auth i], Y, Z	PF21063	Reovirus core-spike protein lambda-2 (L2), GTase domain (Reovirus_L2_GTase)	Reovirus core-spike protein lambda-2 (L2), GTase domain	Reovirus core-spike protein VP1/lambda-2 (VP1/L2) forms a pentamer that mediates enzymatic reactions in 5' capping of the viral plus-strand transcripts [1]. It forms a hollow cylinder with projecting turrets. Each VP1/L2 monomer consists of eight dom ...	Reovirus core-spike protein VP1/lambda-2 (VP1/L2) forms a pentamer that mediates enzymatic reactions in 5' capping of the viral plus-strand transcripts [1]. It forms a hollow cylinder with projecting turrets. Each VP1/L2 monomer consists of eight domains with the most N-terminal domain at the base of the turret and the most C-terminal domain at the top. This entry represents the second one, which contains the nucleotide-binding histidine triad (HIT)-like motif from the GTase (guanylyltransferase) domain [2].	Domain
CA [auth c], FA [auth f], IA [auth i], Y, Z	PF21066	Reovirus core-spike protein lambda-2 (L2), methyltransferase-2 (Reovirus_L2_MT2)	Reovirus core-spike protein lambda-2 (L2), methyltransferase-2	Reovirus core-spike protein VP1/lambda-2 (VP1/L2) forms a pentamer that mediates enzymatic reactions in 5' capping of the viral plus-strand transcripts [1]. It forms a hollow cylinder with projecting turrets. Each VP1/L2 monomer consists of eight dom ...	Reovirus core-spike protein VP1/lambda-2 (VP1/L2) forms a pentamer that mediates enzymatic reactions in 5' capping of the viral plus-strand transcripts [1]. It forms a hollow cylinder with projecting turrets. Each VP1/L2 monomer consists of eight domains with the most N-terminal domain at the base of the turret and the most C-terminal domain at the top. This entry represents the second methyltransferase domain (MT2), which catalyses the last reaction, 2'O-methylation [2].	Domain
CA [auth c], FA [auth f], IA [auth i], Y, Z	PF21065	Reovirus core-spike protein lambda-2 (L2), methyltransferase-1 (Reovirus_L2_MT1)	Reovirus core-spike protein lambda-2 (L2), methyltransferase-1	Reovirus core-spike protein VP1/lambda-2 (VP1/L2) forms a pentamer that mediates enzymatic reactions in 5' capping of the viral plus-strand transcripts [1]. It forms a hollow cylinder with projecting turrets. Each VP1/L2 monomer consists of eight dom ...	Reovirus core-spike protein VP1/lambda-2 (VP1/L2) forms a pentamer that mediates enzymatic reactions in 5' capping of the viral plus-strand transcripts [1]. It forms a hollow cylinder with projecting turrets. Each VP1/L2 monomer consists of eight domains with the most N-terminal domain at the base of the turret and the most C-terminal domain at the top. This entry represents the methyltransferase-1 domain [2] which adds a methyl group to the N7 of the guanosine added by the GTase [2].	Domain
CA [auth c], FA [auth f], IA [auth i], Y, Z	PF21060	Reovirus core-spike protein lambda-2 (L2), 6th domain (Reovirus_L2_6th)	Reovirus core-spike protein lambda-2 (L2), 6th domain	Reovirus core-spike protein VP1/lambda-2 (VP1/L2) forms a pentamer that mediates enzymatic reactions in 5' capping of the viral plus-strand transcripts [1]. It forms a hollow cylinder with projecting turrets. Each VP1/L2 monomer consists of eight dom ...	Reovirus core-spike protein VP1/lambda-2 (VP1/L2) forms a pentamer that mediates enzymatic reactions in 5' capping of the viral plus-strand transcripts [1]. It forms a hollow cylinder with projecting turrets. Each VP1/L2 monomer consists of eight domains with the most N-terminal domain at the base of the turret and the most C-terminal domain at the top. This entry represents the sixth domain which, together with the seventh and eighth (Pfam:PF06016) domains forms a three-domain flap at the top of the turret, that may serve as a gate to retard exit of the 5' terminus of the mRNA [2]. This domain has a Ig-like fold, resembling the V of an antibody light chain [2].	Domain
CA [auth c], FA [auth f], IA [auth i], Y, Z	PF06016	Reovirus core-spike protein lambda-2 (L2), C-terminal (Reovirus_L2_8th)	Reovirus core-spike protein lambda-2 (L2), C-terminal	Reovirus core-spike protein VP1/lambda-2 (VP1/L2) forms a pentamer that mediates enzymatic reactions in 5' capping of the viral plus-strand transcripts [1]. It forms a hollow cylinder with projecting turrets. Each VP1/L2 monomer consists of eight dom ...	Reovirus core-spike protein VP1/lambda-2 (VP1/L2) forms a pentamer that mediates enzymatic reactions in 5' capping of the viral plus-strand transcripts [1]. It forms a hollow cylinder with projecting turrets. Each VP1/L2 monomer consists of eight domains with the most N-terminal domain at the base of the turret and the most C-terminal domain at the top. This entry represents the C-terminal (eighth) domain which, together with the sixth and seventh domains, forms a three-domain flap at the top of the turret, that may serve as a gate to retard exit of the 5' terminus of the mRNA [2]. This domain has a Ig-like, resembling a truncated V region of an antibody light chain.	Domain
CA [auth c], FA [auth f], IA [auth i], Y, Z	PF21062	Reovirus core-spike protein lambda-2 (L2), ferredoxin-like domain (Reovirus_L2_4th)	Reovirus core-spike protein lambda-2 (L2), ferredoxin-like domain	Reovirus core-spike protein VP1/lambda-2 (VP1/L2) forms a pentamer that mediates enzymatic reactions in 5' capping of the viral plus-strand transcripts [1]. It forms a hollow cylinder with projecting turrets. Each VP1/L2 monomer consists of eight dom ...	Reovirus core-spike protein VP1/lambda-2 (VP1/L2) forms a pentamer that mediates enzymatic reactions in 5' capping of the viral plus-strand transcripts [1]. It forms a hollow cylinder with projecting turrets. Each VP1/L2 monomer consists of eight domains with the most N-terminal domain at the base of the turret and the most C-terminal domain at the top. This entry represents the fourth domain, which adopts a ferredoxin-like fold consisting of four beta-strands protected by alpha-helices that probably functions as a structural support for the three enzyme domains (two methyltransferase and GTase domains) [2].	Domain
CA [auth c], FA [auth f], IA [auth i], Y, Z	PF21061	Reovirus core-spike protein lambda-2 (L2), 7th domain (Reovirus_L2_7th)	Reovirus core-spike protein lambda-2 (L2), 7th domain	Reovirus core-spike protein VP1/lambda-2 (VP1/L2) forms a pentamer that mediates enzymatic reactions in 5' capping of the viral plus-strand transcripts [1]. It forms a hollow cylinder with projecting turrets. Each VP1/L2 monomer consists of eight dom ...	Reovirus core-spike protein VP1/lambda-2 (VP1/L2) forms a pentamer that mediates enzymatic reactions in 5' capping of the viral plus-strand transcripts [1]. It forms a hollow cylinder with projecting turrets. Each VP1/L2 monomer consists of eight domains with the most N-terminal domain at the base of the turret and the most C-terminal domain at the top. This entry represents the seventh domain which, together with the sixth (Pfam:PF21060) and eighth (Pfam:PF06016) domains forms a three-domain flap at the top of the turret, that may serve as a gate to retard exit of the 5' terminus of the mRNA [2]. This domain has a Ig-like fold, resembling the C region of an antibody light chain [2].	Domain
A	PF03084	Reoviral Sigma1/Sigma2 family (Sigma_1_2)	Reoviral Sigma1/Sigma2 family	-	Family
A	PF07925	Reovirus RNA-dependent RNA polymerase lambda 3 (RdRP_5)	Reovirus RNA-dependent RNA polymerase lambda 3	-	Family

Gene Ontology: Gene Product Annotation Gene Ontology Database Homepage

Chains	Polymer	Molecular Function	Biological Process	Cellular Component
AA [auth a], BA [auth b], DA [auth d], EA [auth e], GA [auth g], AA [auth a], BA [auth b], DA [auth d], EA [auth e], GA [auth g], HA [auth h], NA [auth n], V, W, X	Clamp protein VP6	-	-	viral capsid icosahedral viral capsid virion component viral intermediate capsid
JA [auth b3], U [auth a3]	RNA (39-MER)	-	-	-
S [auth a1], T [auth b1]	RNA (52-MER)	-	-	-
Q [auth b6], R [auth a6]	RNA (30-MER)	-	-	-
O [auth a5], P [auth b5]	RNA (38-MER)	-	-	-
KA [auth k], LA [auth l], M, MA [auth m], N	Major inner capsid protein VP3	binding adenyl ribonucleotide binding nucleotide binding purine ribonucleotide binding purine ribonucleoside triphosphate binding nucleoside phosphate binding ion binding purine nucleotide binding anion binding adenyl nucleotide binding ATP binding heterocyclic compound binding carbohydrate derivative binding ribonucleotide binding binding adenyl ribonucleotide binding nucleotide binding purine ribonucleotide binding purine ribonucleoside triphosphate binding nucleoside phosphate binding ion binding purine nucleotide binding anion binding adenyl nucleotide binding ATP binding heterocyclic compound binding carbohydrate derivative binding ribonucleotide binding small molecule binding hydrolase activity catalytic activity nucleic acid conformation isomerase activity isomerase activity catalytic activity, acting on RNA catalytic activity, acting on a nucleic acid helicase activity RNA helicase activity ATP-dependent activity, acting on RNA macromolecular conformation isomerase activity ATP-dependent activity cation binding transition metal ion binding zinc ion binding metal ion binding	7-methylguanosine mRNA capping RNA metabolic process primary metabolic process 7-methylguanosine RNA capping RNA capping gene expression nucleobase-containing compound biosynthetic process macromolecule biosynthetic process mRNA processing mRNA metabolic process nucleic acid metabolic process RNA biosynthetic process nucleobase-containing compound metabolic process nucleic acid biosynthetic process biosynthetic process 7-methylguanosine mRNA capping RNA metabolic process primary metabolic process 7-methylguanosine RNA capping RNA capping gene expression nucleobase-containing compound biosynthetic process macromolecule biosynthetic process mRNA processing mRNA metabolic process nucleic acid metabolic process RNA biosynthetic process nucleobase-containing compound metabolic process nucleic acid biosynthetic process biosynthetic process RNA 5'-end processing metabolic process cellular process RNA processing macromolecule metabolic process	viral capsid icosahedral viral capsid virion component viral inner capsid T=2 icosahedral viral capsid
C, D, E, F, G C, D, E, F, G, H, I, J, K, L	Major inner capsid protein VP3	binding adenyl ribonucleotide binding nucleotide binding purine ribonucleotide binding purine ribonucleoside triphosphate binding nucleoside phosphate binding ion binding purine nucleotide binding anion binding adenyl nucleotide binding ATP binding heterocyclic compound binding carbohydrate derivative binding ribonucleotide binding binding adenyl ribonucleotide binding nucleotide binding purine ribonucleotide binding purine ribonucleoside triphosphate binding nucleoside phosphate binding ion binding purine nucleotide binding anion binding adenyl nucleotide binding ATP binding heterocyclic compound binding carbohydrate derivative binding ribonucleotide binding small molecule binding hydrolase activity catalytic activity nucleic acid conformation isomerase activity isomerase activity catalytic activity, acting on RNA catalytic activity, acting on a nucleic acid helicase activity RNA helicase activity ATP-dependent activity, acting on RNA macromolecular conformation isomerase activity ATP-dependent activity cation binding transition metal ion binding zinc ion binding metal ion binding	7-methylguanosine mRNA capping RNA metabolic process primary metabolic process 7-methylguanosine RNA capping RNA capping gene expression nucleobase-containing compound biosynthetic process macromolecule biosynthetic process mRNA processing mRNA metabolic process nucleic acid metabolic process RNA biosynthetic process nucleobase-containing compound metabolic process nucleic acid biosynthetic process biosynthetic process 7-methylguanosine mRNA capping RNA metabolic process primary metabolic process 7-methylguanosine RNA capping RNA capping gene expression nucleobase-containing compound biosynthetic process macromolecule biosynthetic process mRNA processing mRNA metabolic process nucleic acid metabolic process RNA biosynthetic process nucleobase-containing compound metabolic process nucleic acid biosynthetic process biosynthetic process RNA 5'-end processing metabolic process cellular process RNA processing macromolecule metabolic process	viral capsid icosahedral viral capsid virion component viral inner capsid T=2 icosahedral viral capsid
B	Microtubule-associated protein VP5	structural molecule activity	-	host cellular component host intracellular part host cytoskeleton cellular anatomical structure host cell part host intracellular region other organism part host intracellular organelle viral capsid icosahedral viral capsid virion component viral outer capsid
OA [auth a2], PA [auth b2]	RNA (60-MER)	-	-	-
CA [auth c], FA [auth f], IA [auth i], Y, Z	Outer capsid protein VP1	binding adenyl ribonucleotide binding nucleotide binding purine ribonucleotide binding purine ribonucleoside triphosphate binding nucleoside phosphate binding ion binding purine nucleotide binding anion binding adenyl nucleotide binding ATP binding heterocyclic compound binding carbohydrate derivative binding ribonucleotide binding binding adenyl ribonucleotide binding nucleotide binding purine ribonucleotide binding purine ribonucleoside triphosphate binding nucleoside phosphate binding ion binding purine nucleotide binding anion binding adenyl nucleotide binding ATP binding heterocyclic compound binding carbohydrate derivative binding ribonucleotide binding small molecule binding guanylyltransferase activity mRNA guanylyltransferase activity RNA guanylyltransferase activity catalytic activity, acting on RNA catalytic activity, acting on a nucleic acid transferase activity catalytic activity nucleotidyltransferase activity transferase activity, transferring phosphorus-containing groups RNA methyltransferase activity transferase activity, transferring one-carbon groups S-adenosylmethionine-dependent methyltransferase activity mRNA 5'-cap (guanine-N7-)-methyltransferase activity N-methyltransferase activity methyltransferase activity mRNA methyltransferase activity guanyl nucleotide binding GTP binding guanyl ribonucleotide binding	-	viral capsid icosahedral viral capsid virion component viral outer capsid
A	RNA-directed RNA polymerase VP2	RNA-directed RNA polymerase activity 5'-3' RNA polymerase activity catalytic activity, acting on RNA catalytic activity, acting on a nucleic acid RNA polymerase activity transferase activity nucleotidyltransferase activity catalytic activity transferase activity, transferring phosphorus-containing groups hydrolase activity RNA binding binding nucleic acid binding nucleoside phosphate binding RNA-directed RNA polymerase activity 5'-3' RNA polymerase activity catalytic activity, acting on RNA catalytic activity, acting on a nucleic acid RNA polymerase activity transferase activity nucleotidyltransferase activity catalytic activity transferase activity, transferring phosphorus-containing groups hydrolase activity RNA binding binding nucleic acid binding nucleoside phosphate binding nucleotide binding heterocyclic compound binding small molecule binding	viral genome replication viral process viral life cycle	viral nucleocapsid viral capsid virion component

InterPro: Protein Family Classification InterPro Database Homepage

Chains	Accession	Name	Type
AA [auth a], BA [auth b], DA [auth d], EA [auth e], GA [auth g], AA [auth a], BA [auth b], DA [auth d], EA [auth e], GA [auth g], HA [auth h], NA [auth n], V, W, X	IPR004317	Sigma1/sigma2, reoviral	Family
KA [auth k], LA [auth l], M, MA [auth m], N	IPR044949	Inner capsid protein lambda-1/ VP3 superfamily	Homologous Superfamily
KA [auth k], LA [auth l], M, MA [auth m], N	IPR013087	Zinc finger C2H2-type	Domain
KA [auth k], LA [auth l], M, MA [auth m], N	IPR054176	Inner capsid protein lambda-1/VP3	Domain
C, D, E, F, G C, D, E, F, G, H, I, J, K, L	IPR044949	Inner capsid protein lambda-1/ VP3 superfamily	Homologous Superfamily
C, D, E, F, G C, D, E, F, G, H, I, J, K, L	IPR013087	Zinc finger C2H2-type	Domain
C, D, E, F, G C, D, E, F, G, H, I, J, K, L	IPR054176	Inner capsid protein lambda-1/VP3	Domain
B	IPR012494	Reovirus minor core protein, Mu-2	Family
CA [auth c], FA [auth f], IA [auth i], Y, Z	IPR048601	Reovirus core-spike protein lambda-2-like, GTase domain	Domain
CA [auth c], FA [auth f], IA [auth i], Y, Z	IPR048602	Reovirus core-spike protein lambda-2-like, 7th domain	Domain
CA [auth c], FA [auth f], IA [auth i], Y, Z	IPR048604	Reovirus core-spike protein lambda-2-like, ferredoxin-like domain	Domain
CA [auth c], FA [auth f], IA [auth i], Y, Z	IPR029063	S-adenosyl-L-methionine-dependent methyltransferase superfamily	Homologous Superfamily
CA [auth c], FA [auth f], IA [auth i], Y, Z	IPR048598	Reovirus core-spike protein lambda-2-like, first methyltransferase domain	Domain
CA [auth c], FA [auth f], IA [auth i], Y, Z	IPR048596	Reovirus core-spike protein lambda-2-like, N-terminal domain	Domain
CA [auth c], FA [auth f], IA [auth i], Y, Z	IPR013783	Immunoglobulin-like fold	Homologous Superfamily
CA [auth c], FA [auth f], IA [auth i], Y, Z	IPR048603	Reovirus core-spike protein lambda-2-like, 6th domain	Domain
CA [auth c], FA [auth f], IA [auth i], Y, Z	IPR010311	Reovirus core-spike lambda-2	Family
CA [auth c], FA [auth f], IA [auth i], Y, Z	IPR048597	Reovirus core-spike protein lambda-2-like, second methyltransferase domain	Domain
CA [auth c], FA [auth f], IA [auth i], Y, Z	IPR048294	Reovirus core-spike protein lambda-2-like, C-terminal domain	Domain
A	IPR007097	RNA-directed RNA polymerase, reovirus	Domain
A	IPR043502	DNA/RNA polymerase superfamily	Homologous Superfamily
A	IPR012915	Reovirus RNA-dependent RNA polymerase lambda 3	Family

RCSB PDB is hosted by

RCSB PDB is a member of

RCSB Partners
Nucleic Acid Knowledgebase

RCSB PDB Core Operations are funded by the U.S. National Science Foundation (DBI-2321666), the US Department of Energy (DE-SC0019749), and the National Cancer Institute, National Institute of Allergy and Infectious Diseases, and National Institute of General Medical Sciences of the National Institutes of Health under grant R01GM157729. RCSB PDB uses resources of the National Energy Research Scientific Computing Center (NERSC), a Department of Energy User Facility.