Cryo-EM structure of E. coli 70S Ribosome containing mRNA and tRNA (in the transcription-translation complex)
Domain Annotation: SCOP2 Classification SCOP2 Database Homepage
| Chains | Type | Family Name | Domain Identifier | Family Identifier | Provenance Source (Version) |
|---|---|---|---|---|---|
| C [auth AC] | SCOP2B Superfamily | Nucleic acid-binding proteins | 8106545 | 3000135 | SCOP2B (2022-06-29) |
| D [auth AD] | SCOP2B Superfamily | Ribosomal protein S19 | 8103915 | 3000686 | SCOP2B (2022-06-29) |
| E [auth AE] | SCOP2B Superfamily | S13-like H2TH domain | 8098358 | 3000053 | SCOP2B (2022-06-29) |
| F [auth AF] | SCOP2B Superfamily | Glucocorticoid receptor-like (DNA-binding domain) | 8052568 | 3000068 | SCOP2B (2022-06-29) |
| H [auth AH] | SCOP2B Superfamily | Ribosomal protein S10 | 8102681 | 3001336 | SCOP2B (2022-06-29) |
| J [auth AJ] | SCOP2B Superfamily | SIS domain/Ribosomal protein S2-like | 8063838 | 3001397 | SCOP2B (2022-06-29) |
| K [auth AK] | SCOP2B Superfamily | Ribosomal protein S5 domain 2-like | 8082661 | 3000100 | SCOP2B (2022-06-29) |
| N [auth AN] | SCOP2B Superfamily | Ribosomal protein S6 | 8066495 | 3001323 | SCOP2B (2022-06-29) |
| R [auth AR] | SCOP2B Superfamily | S15/NS1 RNA-binding domain | 8032375 | 3001284 | SCOP2B (2022-06-29) |
| S [auth AS] | SCOP2B Superfamily | Nucleic acid-binding proteins | 8059276 | 3000135 | SCOP2B (2022-06-29) |
| AA [auth BD] | SCOP2B Superfamily | Translation proteins SH3-like KOW motif containing domain | 8035393 | 3000334 | SCOP2B (2022-06-29) |
| AA [auth BD] | SCOP2B Superfamily | Nucleic acid-binding proteins | 8035394 | 3000135 | SCOP2B (2022-06-29) |
| BA [auth BE] | SCOP2B Superfamily | Translational proteins | 8032955 | 3000811 | SCOP2B (2022-06-29) |
| DA [auth BG] | SCOP2B Superfamily | RL5-like | 8096352 | 3001709 | SCOP2B (2022-06-29) |
| EA [auth BH] | SCOP2B Superfamily | Translational machinery components | 8032969 | 3000571 | SCOP2B (2022-06-29) |
| NA [auth BQ] | SCOP2B Superfamily | Ribosomal protein L30p/L7e | 8096372 | 3001378 | SCOP2B (2022-06-29) |
| OA [auth BR] | SCOP2B Superfamily | Ribosomal protein L13 | 8096350 | 3001134 | SCOP2B (2022-06-29) |
| PA [auth BS] | SCOP2B Superfamily | 50S Ribosomal protein L14-like | 8103358 | 3000433 | SCOP2B (2022-06-29) |
| RA [auth BU] | SCOP2B Superfamily | Ribosomal protein L16p/L10e | 8096366 | 3000884 | SCOP2B (2022-06-29) |
| SA [auth BV] | SCOP2B Superfamily | Prokaryotic ribosomal protein L17 | 8035409 | 3000995 | SCOP2B (2022-06-29) |
| UA [auth BX] | SCOP2B Superfamily | Ribosomal protein L20 | 8096382 | 3000563 | SCOP2B (2022-06-29) |
| YA [auth DB] | SCOP2B Superfamily | Translation proteins SH3-like KOW motif containing domain | 8096358 | 3000334 | SCOP2B (2022-06-29) |
| ZA [auth DC] | SCOP2B Superfamily | Ribosomal protein L25-like | 8042538 | 3001161 | SCOP2B (2022-06-29) |
| I [auth AI] | SCOP2B Superfamily | Alpha-L RNA-binding motif | 8083400 | 3001473 | SCOP2B (2022-06-29) |
| DB [auth DG] | SCOP2B Superfamily | Ribosomal protein L10-like | 8079773 | 3000665 | SCOP2B (2022-06-29) |
| CB [auth DF] | SCOP2B Superfamily | Ribosomal protein L29 (L29p) | 8096370 | 3000713 | SCOP2B (2022-06-29) |
| BB [auth DE] | SCOP2B Superfamily | L28p-like | 8035424 | 3001966 | SCOP2B (2022-06-29) |
| AB [auth DD] | SCOP2B Superfamily | Ribosomal L27 protein-like | 8096338 | 3000539 | SCOP2B (2022-06-29) |
| XA [auth DA] | SCOP2B Superfamily | Ribosomal proteins S24e, L23 and L15e | 8035415 | 3000210 | SCOP2B (2022-06-29) |
| WA [auth BZ] | SCOP2B Superfamily | Ribosomal protein L22 | 8096336 | 3001078 | SCOP2B (2022-06-29) |
| VA [auth BY] | SCOP2B Superfamily | l21p-like | 8096354 | 3002005 | SCOP2B (2022-06-29) |
| TA [auth BW] | SCOP2B Superfamily | Translation proteins SH3-like KOW motif containing domain | 8096364 | 3000334 | SCOP2B (2022-06-29) |
| QA [auth BT] | SCOP2B Superfamily | Ribosomal proteins L15p and L18e | 8070553 | 3001045 | SCOP2B (2022-06-29) |
| MA [auth BP] | SCOP2B Superfamily | Ribosomal protein L36 | 8035391 | 3001346 | SCOP2B (2022-06-29) |
| LA [auth BO] | SCOP2B Superfamily | L35p-like | 8035388 | 3000790 | SCOP2B (2022-06-29) |
| JA [auth BM] | SCOP2B Superfamily | Zn-binding ribosomal proteins | 8096380 | 3001320 | SCOP2B (2022-06-29) |
| IA [auth BL] | SCOP2B Superfamily | Ribosomal L11/L12e N-terminal domain-like | 8032963 | 3000950 | SCOP2B (2022-06-29) |
| IA [auth BL] | SCOP2B Superfamily | Ribosomal protein L11, C-terminal domain | 8032961 | 3001186 | SCOP2B (2022-06-29) |
| HA [auth BK] | SCOP2B Superfamily | Ribosomal protein L9 C-domain | 8032958 | 3000329 | SCOP2B (2022-06-29) |
| HA [auth BK] | SCOP2B Superfamily | L9 N-domain-like | 8032960 | 3000338 | SCOP2B (2022-06-29) |
| GA [auth BJ] | SCOP2B Superfamily | Ribosomal protein L6 | 8035398 | 3000724 | SCOP2B (2022-06-29) |
| GA [auth BJ] | SCOP2B Superfamily | Ribosomal protein L6 | 8035397 | 3000724 | SCOP2B (2022-06-29) |
| FA [auth BI] | SCOP2B Superfamily | Zn-binding ribosomal proteins | 8096362 | 3001320 | SCOP2B (2022-06-29) |
| CA [auth BF] | SCOP2B Superfamily | Ribosomal protein L4 | 8096356 | 3001146 | SCOP2B (2022-06-29) |
| V [auth AV] | SCOP2B Superfamily | L28p-like | 8032740 | 3001966 | SCOP2B (2022-06-29) |
| U [auth AU] | SCOP2B Superfamily | Ribosomal protein S21 | 8053090 | 3002159 | SCOP2B (2022-06-29) |
| Q [auth AQ] | SCOP2B Superfamily | Ribosomal protein S8 | 8079059 | 3000709 | SCOP2B (2022-06-29) |
| O [auth AO] | SCOP2B Superfamily | Ribosomal protein S16 | 8106547 | 3000680 | SCOP2B (2022-06-29) |
| M [auth AM] | SCOP2B Superfamily | Translational machinery components | 8035368 | 3000571 | SCOP2B (2022-06-29) |
| L [auth AL] | SCOP2B Superfamily | Ribosomal protein S7 | 8077979 | 3000799 | SCOP2B (2022-06-29) |
Domain Annotation: ECOD Classification ECOD Database Homepage
| Chains | Family Name | Domain Identifier | Architecture | Possible Homology | Homology | Topology | Family | Provenance Source (Version) |
|---|---|---|---|---|---|---|---|---|
| B [auth AB] | Acetyltransf_1 | e8fizAB1 | A: beta barrels | X: RNase A-like | H: RNase A-like | T: RNase A-like | F: Acetyltransf_1 | ECOD (v294.2) |
| C [auth AC] | Acetyltransf_1 | e8fizAC1 | A: beta barrels | X: RNase A-like | H: RNase A-like | T: RNase A-like | F: Acetyltransf_1 | ECOD (v294.2) |
| D [auth AD] | Acetyltransf_1 | e8fizAD1 | A: beta barrels | X: RNase A-like | H: RNase A-like | T: RNase A-like | F: Acetyltransf_1 | ECOD (v294.2) |
| E [auth AE] | Acetyltransf_1 | e8fizAE1 | A: beta barrels | X: RNase A-like | H: RNase A-like | T: RNase A-like | F: Acetyltransf_1 | ECOD (v294.2) |
| F [auth AF] | Acetyltransf_1 | e8fizAF1 | A: beta barrels | X: RNase A-like | H: RNase A-like | T: RNase A-like | F: Acetyltransf_1 | ECOD (v294.2) |
| H [auth AH] | Acetyltransf_1 | e8fizAH1 | A: beta barrels | X: RNase A-like | H: RNase A-like | T: RNase A-like | F: Acetyltransf_1 | ECOD (v294.2) |
| J [auth AJ] | Acetyltransf_1 | e8fizAJ1 | A: beta barrels | X: RNase A-like | H: RNase A-like | T: RNase A-like | F: Acetyltransf_1 | ECOD (v294.2) |
| K [auth AK] | Acetyltransf_1 | e8fizAK1 | A: beta barrels | X: RNase A-like | H: RNase A-like | T: RNase A-like | F: Acetyltransf_1 | ECOD (v294.2) |
| N [auth AN] | Acetyltransf_1 | e8fizAN1 | A: beta barrels | X: RNase A-like | H: RNase A-like | T: RNase A-like | F: Acetyltransf_1 | ECOD (v294.2) |
| P [auth AP] | Acetyltransf_1 | e8fizAP1 | A: beta barrels | X: RNase A-like | H: RNase A-like | T: RNase A-like | F: Acetyltransf_1 | ECOD (v294.2) |
| R [auth AR] | Acetyltransf_1 | e8fizAR1 | A: beta barrels | X: RNase A-like | H: RNase A-like | T: RNase A-like | F: Acetyltransf_1 | ECOD (v294.2) |
| S [auth AS] | Acetyltransf_1 | e8fizAS1 | A: beta barrels | X: RNase A-like | H: RNase A-like | T: RNase A-like | F: Acetyltransf_1 | ECOD (v294.2) |
| AA [auth BD] | Acetyltransf_1 | e8fizBD1 | A: beta barrels | X: RNase A-like | H: RNase A-like | T: RNase A-like | F: Acetyltransf_1 | ECOD (v294.2) |
| BA [auth BE] | Acetyltransf_1 | e8fizBE1 | A: beta barrels | X: RNase A-like | H: RNase A-like | T: RNase A-like | F: Acetyltransf_1 | ECOD (v294.2) |
| DA [auth BG] | Acetyltransf_1 | e8fizBG1 | A: beta barrels | X: RNase A-like | H: RNase A-like | T: RNase A-like | F: Acetyltransf_1 | ECOD (v294.2) |
| EA [auth BH] | Acetyltransf_1 | e8fizBH1 | A: beta barrels | X: RNase A-like | H: RNase A-like | T: RNase A-like | F: Acetyltransf_1 | ECOD (v294.2) |
| NA [auth BQ] | Acetyltransf_1 | e8fizBQ1 | A: beta barrels | X: RNase A-like | H: RNase A-like | T: RNase A-like | F: Acetyltransf_1 | ECOD (v294.2) |
| OA [auth BR] | Acetyltransf_1 | e8fizBR1 | A: beta barrels | X: RNase A-like | H: RNase A-like | T: RNase A-like | F: Acetyltransf_1 | ECOD (v294.2) |
| PA [auth BS] | Acetyltransf_1 | e8fizBS1 | A: beta barrels | X: RNase A-like | H: RNase A-like | T: RNase A-like | F: Acetyltransf_1 | ECOD (v294.2) |
| RA [auth BU] | Acetyltransf_1 | e8fizBU1 | A: beta barrels | X: RNase A-like | H: RNase A-like | T: RNase A-like | F: Acetyltransf_1 | ECOD (v294.2) |
| SA [auth BV] | Acetyltransf_1 | e8fizBV1 | A: beta barrels | X: RNase A-like | H: RNase A-like | T: RNase A-like | F: Acetyltransf_1 | ECOD (v294.2) |
| UA [auth BX] | Acetyltransf_1 | e8fizBX1 | A: beta barrels | X: RNase A-like | H: RNase A-like | T: RNase A-like | F: Acetyltransf_1 | ECOD (v294.2) |
| YA [auth DB] | Acetyltransf_1 | e8fizDB1 | A: beta barrels | X: RNase A-like | H: RNase A-like | T: RNase A-like | F: Acetyltransf_1 | ECOD (v294.2) |
| ZA [auth DC] | Acetyltransf_1 | e8fizDC1 | A: beta barrels | X: RNase A-like | H: RNase A-like | T: RNase A-like | F: Acetyltransf_1 | ECOD (v294.2) |
| I [auth AI] | Acetyltransf_1 | e8fizAI1 | A: beta barrels | X: RNase A-like | H: RNase A-like | T: RNase A-like | F: Acetyltransf_1 | ECOD (v294.2) |
| G [auth AG] | Acetyltransf_1 | e8fizAG1 | A: beta barrels | X: RNase A-like | H: RNase A-like | T: RNase A-like | F: Acetyltransf_1 | ECOD (v294.2) |
| DB [auth DG] | Acetyltransf_1 | e8fizDG1 | A: beta barrels | X: RNase A-like | H: RNase A-like | T: RNase A-like | F: Acetyltransf_1 | ECOD (v294.2) |
| CB [auth DF] | Acetyltransf_1 | e8fizDF1 | A: beta barrels | X: RNase A-like | H: RNase A-like | T: RNase A-like | F: Acetyltransf_1 | ECOD (v294.2) |
| BB [auth DE] | Acetyltransf_1 | e8fizDE1 | A: beta barrels | X: RNase A-like | H: RNase A-like | T: RNase A-like | F: Acetyltransf_1 | ECOD (v294.2) |
| AB [auth DD] | Acetyltransf_1 | e8fizDD1 | A: beta barrels | X: RNase A-like | H: RNase A-like | T: RNase A-like | F: Acetyltransf_1 | ECOD (v294.2) |
| XA [auth DA] | Acetyltransf_1 | e8fizDA1 | A: beta barrels | X: RNase A-like | H: RNase A-like | T: RNase A-like | F: Acetyltransf_1 | ECOD (v294.2) |
| WA [auth BZ] | Acetyltransf_1 | e8fizBZ1 | A: beta barrels | X: RNase A-like | H: RNase A-like | T: RNase A-like | F: Acetyltransf_1 | ECOD (v294.2) |
| VA [auth BY] | Acetyltransf_1 | e8fizBY1 | A: beta barrels | X: RNase A-like | H: RNase A-like | T: RNase A-like | F: Acetyltransf_1 | ECOD (v294.2) |
| TA [auth BW] | Acetyltransf_1 | e8fizBW1 | A: beta barrels | X: RNase A-like | H: RNase A-like | T: RNase A-like | F: Acetyltransf_1 | ECOD (v294.2) |
| QA [auth BT] | Acetyltransf_1 | e8fizBT1 | A: beta barrels | X: RNase A-like | H: RNase A-like | T: RNase A-like | F: Acetyltransf_1 | ECOD (v294.2) |
| MA [auth BP] | Acetyltransf_1 | e8fizBP1 | A: beta barrels | X: RNase A-like | H: RNase A-like | T: RNase A-like | F: Acetyltransf_1 | ECOD (v294.2) |
| LA [auth BO] | Acetyltransf_1 | e8fizBO1 | A: beta barrels | X: RNase A-like | H: RNase A-like | T: RNase A-like | F: Acetyltransf_1 | ECOD (v294.2) |
| KA [auth BN] | Acetyltransf_1 | e8fizBN1 | A: beta barrels | X: RNase A-like | H: RNase A-like | T: RNase A-like | F: Acetyltransf_1 | ECOD (v294.2) |
| JA [auth BM] | Acetyltransf_1 | e8fizBM1 | A: beta barrels | X: RNase A-like | H: RNase A-like | T: RNase A-like | F: Acetyltransf_1 | ECOD (v294.2) |
| IA [auth BL] | Acetyltransf_1 | e8fizBL1 | A: beta barrels | X: RNase A-like | H: RNase A-like | T: RNase A-like | F: Acetyltransf_1 | ECOD (v294.2) |
| HA [auth BK] | Acetyltransf_1 | e8fizBK1 | A: beta barrels | X: RNase A-like | H: RNase A-like | T: RNase A-like | F: Acetyltransf_1 | ECOD (v294.2) |
| GA [auth BJ] | Acetyltransf_1 | e8fizBJ1 | A: beta barrels | X: RNase A-like | H: RNase A-like | T: RNase A-like | F: Acetyltransf_1 | ECOD (v294.2) |
| FA [auth BI] | Acetyltransf_1 | e8fizBI1 | A: beta barrels | X: RNase A-like | H: RNase A-like | T: RNase A-like | F: Acetyltransf_1 | ECOD (v294.2) |
| CA [auth BF] | Acetyltransf_1 | e8fizBF1 | A: beta barrels | X: RNase A-like | H: RNase A-like | T: RNase A-like | F: Acetyltransf_1 | ECOD (v294.2) |
| V [auth AV] | Acetyltransf_1 | e8fizAV1 | A: beta barrels | X: RNase A-like | H: RNase A-like | T: RNase A-like | F: Acetyltransf_1 | ECOD (v294.2) |
| U [auth AU] | Acetyltransf_1 | e8fizAU1 | A: beta barrels | X: RNase A-like | H: RNase A-like | T: RNase A-like | F: Acetyltransf_1 | ECOD (v294.2) |
| T [auth AT] | Acetyltransf_1 | e8fizAT1 | A: beta barrels | X: RNase A-like | H: RNase A-like | T: RNase A-like | F: Acetyltransf_1 | ECOD (v294.2) |
| Q [auth AQ] | Acetyltransf_1 | e8fizAQ1 | A: beta barrels | X: RNase A-like | H: RNase A-like | T: RNase A-like | F: Acetyltransf_1 | ECOD (v294.2) |
| O [auth AO] | Acetyltransf_1 | e8fizAO1 | A: beta barrels | X: RNase A-like | H: RNase A-like | T: RNase A-like | F: Acetyltransf_1 | ECOD (v294.2) |
| M [auth AM] | Acetyltransf_1 | e8fizAM1 | A: beta barrels | X: RNase A-like | H: RNase A-like | T: RNase A-like | F: Acetyltransf_1 | ECOD (v294.2) |
| L [auth AL] | Acetyltransf_1 | e8fizAL1 | A: beta barrels | X: RNase A-like | H: RNase A-like | T: RNase A-like | F: Acetyltransf_1 | ECOD (v294.2) |
Protein Family Annotation Pfam Database Homepage
| Chains | Accession | Name | Description | Comments | Source |
|---|---|---|---|---|---|
| B [auth AB] | PF01649 | Ribosomal protein S20 (Ribosomal_S20p) | Ribosomal protein S20 | - | Family |
| C [auth AC] | PF00164 | Ribosomal protein S12/S23 (Ribosom_S12_S23) | Ribosomal protein S12/S23 | This protein is known as S12 in bacteria and archaea and S23 in eukaryotes. | Domain |
| D [auth AD] | PF00203 | Ribosomal protein S19 (Ribosomal_S19) | Ribosomal protein S19 | Domain | |
| E [auth AE] | PF00416 | Ribosomal protein S13/S18 (Ribosomal_S13) | Ribosomal protein S13/S18 | - | Family |
| F [auth AF] | PF00253 | Ribosomal protein S14p/S29e (Ribosomal_S14) | Ribosomal protein S14p/S29e | - | Family |
| H [auth AH] | PF00338 | Ribosomal protein S10p/S20e (Ribosomal_S10) | Ribosomal protein S10p/S20e | This family includes small ribosomal subunit S10 from prokaryotes and S20 from eukaryotes. | Domain |
| J [auth AJ] | PF00318 | Ribosomal protein S2 (Ribosomal_S2) | Ribosomal protein S2 | - | Family |
| K [auth AK] | PF00380 | Ribosomal protein S9/S16 (Ribosomal_S9) | Ribosomal protein S9/S16 | - | Family |
| N [auth AN] | PF01250 | Ribosomal protein S6 (Ribosomal_S6) | Ribosomal protein S6 | Domain | |
| P [auth AP] | PF03719 | Ribosomal protein S5, C-terminal domain (Ribosomal_S5_C) | Ribosomal protein S5, C-terminal domain | Domain | |
| P [auth AP] | PF00333 | Ribosomal protein S5, N-terminal domain (Ribosomal_S5) | Ribosomal protein S5, N-terminal domain | Domain | |
| R [auth AR] | PF00312 | Ribosomal protein S15 (Ribosomal_S15) | Ribosomal protein S15 | Domain | |
| S [auth AS] | PF00366 | Ribosomal protein S17 (Ribosomal_S17) | Ribosomal protein S17 | Domain | |
| AA [auth BD] | PF03947 | Ribosomal Proteins L2, C-terminal domain (Ribosomal_L2_C) | Ribosomal Proteins L2, C-terminal domain | Domain | |
| AA [auth BD] | PF00181 | Ribosomal Proteins L2, RNA binding N-terminal domain (Ribosomal_L2_N) | Ribosomal Proteins L2, RNA binding N-terminal domain | Domain | |
| BA [auth BE] | PF00297 | Ribosomal protein L3 (Ribosomal_L3) | Ribosomal protein L3 | - | Family |
| DA [auth BG] | PF00281 | Ribosomal protein L5 (Ribosomal_L5) | Ribosomal protein L5 | Domain | |
| DA [auth BG] | PF00673 | ribosomal L5P family C-terminus (Ribosomal_L5_C) | ribosomal L5P family C-terminus | This region is found associated with Pfam:PF00281. | Domain |
| EA [auth BH] | PF00861 | Ribosomal L18 of archaea, bacteria, mitoch. and chloroplast (Ribosomal_L18p) | Ribosomal L18 of archaea, bacteria, mitoch. and chloroplast | - | Family |
| NA [auth BQ] | PF00327 | Ribosomal protein L30p/L7e (Ribosomal_L30) | Ribosomal protein L30p/L7e | This family includes prokaryotic L30 and eukaryotic L7. | Domain |
| OA [auth BR] | PF00572 | Ribosomal protein L13 (Ribosomal_L13) | Ribosomal protein L13 | - | Family |
| PA [auth BS] | PF00238 | Ribosomal protein L14p/L23e (Ribosomal_L14) | Ribosomal protein L14p/L23e | Domain | |
| RA [auth BU] | PF00252 | Ribosomal protein L16p/L10e (Ribosomal_L16) | Ribosomal protein L16p/L10e | Domain | |
| SA [auth BV] | PF01196 | Ribosomal protein L17 (Ribosomal_L17) | Ribosomal protein L17 | - | Family |
| UA [auth BX] | PF00453 | Ribosomal protein L20 (Ribosomal_L20) | Ribosomal protein L20 | - | Family |
| YA [auth DB] | PF17136 | Large ribosomal subunit protein uL24, C-terminal domain (ribosomal_L24) | Large ribosomal subunit protein uL24, C-terminal domain | This entry describes the C-terminal domain in large ribosomal subunit protein uL24 (also known as RPL26). RPL26 is one of the proteins from the large ribosomal subunit. In their mature form, these proteins have 103 to 150 amino-acid residues. RPL26 m ... | Domain |
| YA [auth DB] | PF00467 | KOW motif (KOW) | KOW motif | - | Family |
| ZA [auth DC] | PF01386 | Ribosomal L25p family (Ribosomal_L25p) | Ribosomal L25p family | Ribosomal protein L25 is an RNA binding protein, that binds 5S rRNA. This family includes Ctc from B. subtilis Swiss:P14194, which is induced by stress. | Domain |
| I [auth AI] | PF00163 | Ribosomal protein S4/S9 N-terminal domain (Ribosomal_S4) | Ribosomal protein S4/S9 N-terminal domain | - | Family |
| I [auth AI] | PF01479 | S4 domain (S4) | S4 domain | The S4 domain is a small domain consisting of 60-65 amino acid residues that was detected in the bacterial ribosomal protein S4, eukaryotic ribosomal S9, two families of pseudouridine synthases, a novel family of predicted RNA methylases, a yeast pro ... | Domain |
| G [auth AG] | PF07650 | KH domain (KH_2) | KH domain | Domain | |
| G [auth AG] | PF00189 | Ribosomal protein S3, C-terminal domain (Ribosomal_S3_C) | Ribosomal protein S3, C-terminal domain | This family contains a central domain Pfam:PF00013, hence the amino and carboxyl terminal domains are stored separately. This is a minimal carboxyl-terminal domain. Some are much longer. | Domain |
| DB [auth DG] | PF00466 | Ribosomal protein L10 (Ribosomal_L10) | Ribosomal protein L10 | - | Family |
| CB [auth DF] | PF00831 | Ribosomal L29 protein (Ribosomal_L29) | Ribosomal L29 protein | - | Family |
| BB [auth DE] | PF00830 | Ribosomal L28 family (Ribosomal_L28) | Ribosomal L28 family | - | Family |
| XA [auth DA] | PF00276 | Ribosomal protein L23 (Ribosomal_L23) | Ribosomal protein L23 | - | Family |
| WA [auth BZ] | PF00237 | Ribosomal protein L22p/L17e (Ribosomal_L22) | Ribosomal protein L22p/L17e | This family includes L22 from prokaryotes and chloroplasts and L17 from eukaryotes. | Domain |
| VA [auth BY] | PF00829 | Ribosomal prokaryotic L21 protein (Ribosomal_L21p) | Ribosomal prokaryotic L21 protein | - | Family |
| TA [auth BW] | PF01245 | Ribosomal protein L19 (Ribosomal_L19) | Ribosomal protein L19 | - | Family |
| QA [auth BT] | PF00828 | Ribosomal proteins 50S-L15, 50S-L18e, 60S-L27A (Ribosomal_L27A) | Ribosomal proteins 50S-L15, 50S-L18e, 60S-L27A | This family includes higher eukaryotic ribosomal 60S L27A, archaeal 50S L18e, prokaryotic 50S L15, fungal mitochondrial L10, plant L27A, mitochondrial L15 and chloroplast L18-3 proteins. | Domain |
| MA [auth BP] | PF00444 | Ribosomal protein L36 (Ribosomal_L36) | Ribosomal protein L36 | Domain | |
| LA [auth BO] | PF01632 | Ribosomal protein L35 (Ribosomal_L35p) | Ribosomal protein L35 | - | Family |
| KA [auth BN] | PF00468 | Ribosomal protein L34 (Ribosomal_L34) | Ribosomal protein L34 | - | Family |
| JA [auth BM] | PF01783 | Ribosomal L32p protein family (Ribosomal_L32p) | Ribosomal L32p protein family | - | Family |
| IA [auth BL] | PF03946 | Ribosomal protein L11, N-terminal domain (Ribosomal_L11_N) | Ribosomal protein L11, N-terminal domain | The N-terminal domain of Ribosomal protein L11 adopts an alpha/beta fold and is followed by the RNA binding C-terminal domain. | Domain |
| IA [auth BL] | PF00298 | Ribosomal protein L11, RNA binding domain (Ribosomal_L11) | Ribosomal protein L11, RNA binding domain | Domain | |
| HA [auth BK] | PF01281 | Ribosomal protein L9, N-terminal domain (Ribosomal_L9_N) | Ribosomal protein L9, N-terminal domain | Domain | |
| HA [auth BK] | PF03948 | Ribosomal protein L9, C-terminal domain (Ribosomal_L9_C) | Ribosomal protein L9, C-terminal domain | Domain | |
| GA [auth BJ] | PF00347 | Ribosomal protein L6 (Ribosomal_L6) | Ribosomal protein L6 | Domain | |
| FA [auth BI] | PF00471 | Ribosomal protein L33 (Ribosomal_L33) | Ribosomal protein L33 | - | Family |
| CA [auth BF] | PF00573 | Ribosomal protein L4/L1 family (Ribosomal_L4) | Ribosomal protein L4/L1 family | - | Family |
| V [auth AV] | PF01197 | Ribosomal protein L31 (Ribosomal_L31) | Ribosomal protein L31 | - | Family |
| U [auth AU] | PF01165 | Ribosomal protein S21 (Ribosomal_S21) | Ribosomal protein S21 | - | Family |
| Q [auth AQ] | PF00410 | Ribosomal protein S8 (Ribosomal_S8) | Ribosomal protein S8 | Domain | |
| O [auth AO] | PF00886 | Ribosomal protein S16 (Ribosomal_S16) | Ribosomal protein S16 | - | Family |
| M [auth AM] | PF00411 | Ribosomal protein S11 (Ribosomal_S11) | Ribosomal protein S11 | - | Family |
| L [auth AL] | PF00177 | Ribosomal protein S7p/S5e (Ribosomal_S7) | Ribosomal protein S7p/S5e | This family contains ribosomal protein S7 from prokaryotes and S5 from eukaryotes. | Domain |














