8F8Y
PHF2 (PHD+JMJ) in Complex with VRK1 N-Terminal Peptide
Domain Annotation: ECOD Classification ECOD Database Homepage
Chains | Family Name | Domain Identifier | Architecture | Possible Homology | Homology | Topology | Family | Provenance Source (Version) |
---|---|---|---|---|---|---|---|---|
A | JmjC_1 | e8f8yA1 | A: beta sandwiches | X: jelly-roll | H: Double-stranded beta-helix (From Topology) | T: Double-stranded beta-helix | F: JmjC_1 | ECOD (1.6) |
A | KOG1633 | e8f8yA2 | A: alpha bundles | X: C-terminal helical domain in Jumonji domain-containing histone demethylases (From Topology) | H: C-terminal helical domain in Jumonji domain-containing histone demethylases (From Topology) | T: C-terminal helical domain in Jumonji domain-containing histone demethylases | F: KOG1633 | ECOD (1.6) |
A | PHD | e8f8yA3 | A: few secondary structure elements | X: RING/U-box-like | H: RING/U-box-like | T: FYVE/PHD zinc finger | F: PHD | ECOD (1.6) |
B | JmjC_1 | e8f8yB3 | A: beta sandwiches | X: jelly-roll | H: Double-stranded beta-helix (From Topology) | T: Double-stranded beta-helix | F: JmjC_1 | ECOD (1.6) |
B | KOG1633 | e8f8yB1 | A: alpha bundles | X: C-terminal helical domain in Jumonji domain-containing histone demethylases (From Topology) | H: C-terminal helical domain in Jumonji domain-containing histone demethylases (From Topology) | T: C-terminal helical domain in Jumonji domain-containing histone demethylases | F: KOG1633 | ECOD (1.6) |
B | PHD | e8f8yB2 | A: few secondary structure elements | X: RING/U-box-like | H: RING/U-box-like | T: FYVE/PHD zinc finger | F: PHD | ECOD (1.6) |
Protein Family Annotation Pfam Database Homepage
Chains | Accession | Name | Description | Comments | Source |
---|---|---|---|---|---|
PF00628 | PHD-finger (PHD) | PHD-finger | PHD folds into an interleaved type of Zn-finger chelating 2 Zn ions in a similar manner to that of the RING and FYVE domains [2]. Several PHD fingers have been identified as binding modules of methylated histone H3 [3]. | Domain | |
PF02373 | JmjC domain, hydroxylase (JmjC) | JmjC domain, hydroxylase | The JmjC domain belongs to the Cupin superfamily [3]. JmjC-domain proteins may be protein hydroxylases that catalyse a novel histone modification [4]. This is confirmed to be a hydroxylase: the human JmjC protein named Tyw5p unexpectedly acts in the ... | Domain | |
PF17811 | Jumonji helical domain (JHD) | Jumonji helical domain | This 4-helix bundle domain is associated with the Jumonji domain Pfam:PF02373 [1]. | Domain | |
Gene Ontology: Gene Product Annotation Gene Ontology Database Homepage
InterPro: Protein Family Classification InterPro Database Homepage
Chains | Accession | Name | Type |
---|---|---|---|
IPR001965 | Zinc finger, PHD-type | Domain | |
IPR050690 | JHDM1 Histone Demethylase | Family | |
IPR003347 | JmjC domain | Domain | |
IPR013083 | Zinc finger, RING/FYVE/PHD-type | Homologous Superfamily | |
IPR041070 | Jumonji, helical domain | Domain | |
IPR019787 | Zinc finger, PHD-finger | Domain | |
IPR011011 | Zinc finger, FYVE/PHD-type | Homologous Superfamily | |
IPR019786 | Zinc finger, PHD-type, conserved site | Conserved Site | |
C [auth E], D [auth F] | IPR017441 | Protein kinase, ATP binding site | Binding Site |
C [auth E], D [auth F] | IPR000719 | Protein kinase domain | Domain |
C [auth E], D [auth F] | IPR050235 | Casein Kinase 1 Ser/Thr Protein Kinase | Family |
C [auth E], D [auth F] | IPR011009 | Protein kinase-like domain superfamily | Homologous Superfamily |
C [auth E], D [auth F] | IPR008271 | Serine/threonine-protein kinase, active site | Active Site |
Pharos: Disease Associations Pharos Homepage Annotation
Protein Modification Annotation
Modified Residue(s) | ||
---|---|---|
Chain | Residue(s) | Description |
C [auth E], D [auth F] | M3L | Parent Component: LYS :  AA0074 :  N6,N6,N6-trimethyl-L-lysine MOD:00083 |