8EVP

Hypopseudouridylated yeast 80S bound with Taura syndrome virus (TSV) internal ribosome entry site (IRES), Structure I

External Resource: Annotation


Domain Annotation: SCOP2 Classification SCOP2 Database Homepage

ChainsTypeFamily Name Domain Identifier Family IdentifierProvenance Source (Version)
IB [auth AY]SCOP2B SuperfamilyTranslation proteins SH3-like KOW motif containing domain 8076760 3000334 SCOP2B (2022-06-29)
A [auth BA]SCOP2B SuperfamilySIS domain/Ribosomal protein S2-like 8061280 3001397 SCOP2B (2022-06-29)
J [auth BN]SCOP2B SuperfamilyHomeodomain-like 8052973 3000001 SCOP2B (2022-06-29)
J [auth BN]SCOP2B SuperfamilyS15/NS1 RNA-binding domain 8052974 3001284 SCOP2B (2022-06-29)
K [auth BO]SCOP2B SuperfamilyTranslational machinery components 8095805 3000571 SCOP2B (2022-06-29)
L [auth BV]SCOP2B SuperfamilyGlucocorticoid receptor-like (DNA-binding domain) 8053136 3000068 SCOP2B (2022-06-29)
R [auth Be]SCOP2B SuperfamilyRibosomal protein S30e-like 8053451 3002190 SCOP2B (2022-06-29)
T [auth BF]SCOP2B SuperfamilyRibosomal protein S7 8065999 3000799 SCOP2B (2022-06-29)
U [auth BK]SCOP2B SuperfamilyWinged helix DNA-binding domain 8055713 3000034 SCOP2B (2022-06-29)
W [auth BQ]SCOP2B SuperfamilyRibosomal protein S5 domain 2-like 8103366 3000100 SCOP2B (2022-06-29)
Y [auth BS]SCOP2B SuperfamilyS13-like H2TH domain 8098450 3000053 SCOP2B (2022-06-29)
JA [auth AB]SCOP2B SuperfamilyTranslational proteins 8078363 3000811 SCOP2B (2022-06-29)
D [auth BE]SCOP2B SuperfamilyNucleic acid-binding proteins 8052759 3000135 SCOP2B (2022-06-29)
D [auth BE]SCOP2B SuperfamilyTranslation proteins SH3-like KOW motif containing domain 8052760 3000334 SCOP2B (2022-06-29)
D [auth BE]SCOP2B SuperfamilyAlpha-L RNA-binding motif 8052758 3001473 SCOP2B (2022-06-29)
PA [auth AE]SCOP2B SuperfamilyTranslation proteins SH3-like KOW motif containing domain 8053109 3000334 SCOP2B (2022-06-29)
QA [auth AF]SCOP2B SuperfamilyRibosomal protein L30p/L7e 8052917 3001378 SCOP2B (2022-06-29)
QA [auth AF]SCOP2B SuperfamilyRibosomal L30p/L7e protein, N-terminal domain-lke 8052916 3002152 SCOP2B (2022-06-29)
RA [auth AG]SCOP2B SuperfamilyL30e-like 8063962 3001739 SCOP2B (2022-06-29)
VA [auth AL]SCOP2B SuperfamilyRibosomal protein L13e-like 8053159 3002162 SCOP2B (2022-06-29)
E [auth BG]SCOP2B SuperfamilyGS N-terminal domain-like 8053173 3000408 SCOP2B (2022-06-29)
XA [auth AN]SCOP2B SuperfamilyRibosomal proteins S24e, L23 and L15e 8082481 3000210 SCOP2B (2022-06-29)
YA [auth AO]SCOP2B SuperfamilyRibosomal protein L13 8066053 3001134 SCOP2B (2022-06-29)
ZA [auth AP]SCOP2B SuperfamilyRibosomal protein L22 8076708 3001078 SCOP2B (2022-06-29)
AB [auth AQ]SCOP2B SuperfamilyRibosomal proteins L15p and L18e 8095970 3001045 SCOP2B (2022-06-29)
BB [auth AR]SCOP2B SuperfamilyRibosomal protein L19 (L19e) 8077485 3000890 SCOP2B (2022-06-29)
EB [auth AU]SCOP2B Superfamily60S Ribosomal protein L22e 8053058 3002158 SCOP2B (2022-06-29)
FB [auth AV]SCOP2B Superfamily50S Ribosomal protein L14-like 8103364 3000433 SCOP2B (2022-06-29)
HB [auth AX]SCOP2B SuperfamilyRibosomal proteins S24e, L23 and L15e 8095962 3000210 SCOP2B (2022-06-29)
JB [auth AZ]SCOP2B SuperfamilyTranslation proteins SH3-like KOW motif containing domain 8053046 3000334 SCOP2B (2022-06-29)
KB [auth Aa]SCOP2B SuperfamilyRibosomal proteins L15p and L18e 8077127 3001045 SCOP2B (2022-06-29)
MB [auth Ac]SCOP2B SuperfamilyL30e-like 8039862 3001739 SCOP2B (2022-06-29)
PB [auth Af]SCOP2B SuperfamilyTranslational proteins 8087451 3000811 SCOP2B (2022-06-29)
QB [auth Ag]SCOP2B SuperfamilyRibosomal protein L34e-like 8053547 3002203 SCOP2B (2022-06-29)
G [auth BI]SCOP2B Superfamily50S Ribosomal protein L14-like 8053083 3000433 SCOP2B (2022-06-29)
SB [auth Ai]SCOP2B SuperfamilyRibosomal protein L36e 8053115 3002161 SCOP2B (2022-06-29)
TB [auth Aj]SCOP2B SuperfamilyZn-binding ribosomal proteins 8080044 3001320 SCOP2B (2022-06-29)
VB [auth Al]SCOP2B SuperfamilyRibosomal protein L39e 8078549 3001756 SCOP2B (2022-06-29)
ZB [auth Ap]SCOP2B SuperfamilyZn-binding ribosomal proteins 8103126 3001320 SCOP2B (2022-06-29)
I [auth BL]SCOP2B SuperfamilyNucleic acid-binding proteins 8052738 3000135 SCOP2B (2022-06-29)
I [auth BL]SCOP2B SuperfamilyRibosomal S17 N-terminal domain-like 8052736 3002138 SCOP2B (2022-06-29)

Protein Family Annotation Pfam Database Homepage

ChainsAccessionNameDescriptionCommentsSource
IB [auth AY]PF16906Ribosomal proteins L26 eukaryotic, L24P archaeal (Ribosomal_L26)Ribosomal proteins L26 eukaryotic, L24P archaeal- Family
IB [auth AY]PF00467KOW motif (KOW)KOW motif- Family
A [auth BA]PF00318Ribosomal protein S2 (Ribosomal_S2)Ribosomal protein S2- Family
J [auth BN]PF00312Ribosomal protein S15 (Ribosomal_S15)Ribosomal protein S15- Domain
K [auth BO]PF00411Ribosomal protein S11 (Ribosomal_S11)Ribosomal protein S11- Family
L [auth BV]PF01249Ribosomal protein S21e (Ribosomal_S21e)Ribosomal protein S21e- Family
N [auth BX]PF00164Ribosomal protein S12/S23 (Ribosom_S12_S23)Ribosomal protein S12/S23- Family
O [auth BY]PF01282Ribosomal protein S24e (Ribosomal_S24e)Ribosomal protein S24e- Family
B [auth BB]PF01667Ribosomal protein S27 (Ribosomal_S27e)Ribosomal protein S27- Family
T [auth BF]PF00177Ribosomal protein S7p/S5e (Ribosomal_S7)Ribosomal protein S7p/S5eThis family contains ribosomal protein S7 from prokaryotes and S5 from eukaryotes.Domain
U [auth BK]PF03501Plectin/S10 domain (S10_plectin)Plectin/S10 domainThis presumed domain is found at the N-terminus of some isoforms of the cytoskeletal muscle protein plectin as well as the ribosomal S10 protein. This domain may be involved in RNA binding.Domain
W [auth BQ]PF00380Ribosomal protein S9/S16 (Ribosomal_S9)Ribosomal protein S9/S16- Family
Y [auth BS]PF00416Ribosomal protein S13/S18 (Ribosomal_S13)Ribosomal protein S13/S18- Family
Z [auth BT]PF01090Ribosomal protein S19e (Ribosomal_S19e)Ribosomal protein S19e- Family
IA [auth AA]PF03947Ribosomal Proteins L2, C-terminal domain (Ribosomal_L2_C)Ribosomal Proteins L2, C-terminal domain- Domain
IA [auth AA]PF00181Ribosomal Proteins L2, RNA binding domain (Ribosomal_L2)Ribosomal Proteins L2, RNA binding domain- Domain
IA [auth AA]PF00828Ribosomal proteins 50S-L15, 50S-L18e, 60S-L27A (Ribosomal_L27A)Ribosomal proteins 50S-L15, 50S-L18e, 60S-L27A- Family
D [auth BE]PF04758Ribosomal protein S30 (Ribosomal_S30)Ribosomal protein S30- Family
D [auth BE]PF00900Ribosomal family S4e (Ribosomal_S4e)Ribosomal family S4e- Family
D [auth BE]PF1612140S ribosomal protein S4 C-terminus (40S_S4_C)40S ribosomal protein S4 C-terminus- Family
D [auth BE]PF08071RS4NT (NUC023) domain (RS4NT)RS4NT (NUC023) domainThis is the N-terminal domain of Ribosomal S4 / S4e proteins. This domain is associated with S4 and KOW domains [1].Domain
D [auth BE]PF01479S4 domain (S4)S4 domainThe S4 domain is a small domain consisting of 60-65 amino acid residues that was detected in the bacterial ribosomal protein S4, eukaryotic ribosomal S9, two families of pseudouridine synthases, a novel family of predicted RNA methylases, a yeast pro ...The S4 domain is a small domain consisting of 60-65 amino acid residues that was detected in the bacterial ribosomal protein S4, eukaryotic ribosomal S9, two families of pseudouridine synthases, a novel family of predicted RNA methylases, a yeast protein containing a pseudouridine synthetase and a deaminase domain, bacterial tyrosyl-tRNA synthetases, and a number of uncharacterized, small proteins that may be involved in translation regulation [1]. The S4 domain probably mediates binding to RNA.
Domain
D [auth BE]PF00467KOW motif (KOW)KOW motif- Family
OA [auth AD]PF01198Ribosomal protein L31e (Ribosomal_L31e)Ribosomal protein L31e- Family
PA [auth AE]PF01159Ribosomal protein L6e (Ribosomal_L6e)Ribosomal protein L6e- Family
QA [auth AF]PF00327Ribosomal protein L30p/L7e (Ribosomal_L30)Ribosomal protein L30p/L7eThis family includes prokaryotic L30 and eukaryotic L7.Domain
QA [auth AF]PF01247Ribosomal protein L35Ae (Ribosomal_L35Ae)Ribosomal protein L35Ae- Domain
RA [auth AG]PF01248Ribosomal protein L7Ae/L30e/S12e/Gadd45 family (Ribosomal_L7Ae)Ribosomal protein L7Ae/L30e/S12e/Gadd45 familyThis family includes: Ribosomal L7A from metazoa, Ribosomal L8-A and L8-B from fungi, 30S ribosomal protein HS6 from archaebacteria, 40S ribosomal protein S12 from eukaryotes, Ribosomal protein L30 from eukaryotes and archaebacteria. Gadd45 and MyD11 ...This family includes: Ribosomal L7A from metazoa, Ribosomal L8-A and L8-B from fungi, 30S ribosomal protein HS6 from archaebacteria, 40S ribosomal protein S12 from eukaryotes, Ribosomal protein L30 from eukaryotes and archaebacteria. Gadd45 and MyD118 [1].
Domain
SA [auth AH]PF00831Ribosomal L29 protein (Ribosomal_L29)Ribosomal L29 protein- Family
SA [auth AH]PF00347Ribosomal protein L6 (Ribosomal_L6)Ribosomal protein L6- Domain
TA [auth AI]PF01158Ribosomal protein L36e (Ribosomal_L36e)Ribosomal protein L36e- Family
UA [auth AJ]PF01907Ribosomal protein L37e (Ribosomal_L37e)Ribosomal protein L37e- Family
VA [auth AL]PF00832Ribosomal L39 protein (Ribosomal_L39)Ribosomal L39 protein- Family
VA [auth AL]PF01294Ribosomal protein L13e (Ribosomal_L13e)Ribosomal protein L13e- Family
WA [auth AM]PF01020Ribosomal L40e family (Ribosomal_L40e)Ribosomal L40e family- Family
WA [auth AM]PF01929Ribosomal protein L14 (Ribosomal_L14e)Ribosomal protein L14- Family
WA [auth AM]PF00467KOW motif (KOW)KOW motif- Family
E [auth BG]PF01092Ribosomal protein S6e (Ribosomal_S6e)Ribosomal protein S6e- Family
E [auth BG]PF00400WD domain, G-beta repeat (WD40)WD domain, G-beta repeat- Repeat
XA [auth AN]PF05162Ribosomal protein L41 (Ribosomal_L41)Ribosomal protein L41- Family
XA [auth AN]PF00827Ribosomal L15 (Ribosomal_L15e)Ribosomal L15- Family
YA [auth AO]PF00935Ribosomal protein L44 (Ribosomal_L44)Ribosomal protein L44- Family
YA [auth AO]PF00572Ribosomal protein L13 (Ribosomal_L13)Ribosomal protein L13- Family
ZA [auth AP]PF00237Ribosomal protein L22p/L17e (Ribosomal_L22)Ribosomal protein L22p/L17eThis family includes L22 from prokaryotes and chloroplasts and L17 from eukaryotes.Domain
ZA [auth AP]PF01780Ribosomal L37ae protein family (Ribosomal_L37ae)Ribosomal L37ae protein family- Family
AB [auth AQ]PF17135Ribosomal protein 60S L18 and 50S L18e (Ribosomal_L18)Ribosomal protein 60S L18 and 50S L18e- Family
BB [auth AR]PF01280Ribosomal protein L19e (Ribosomal_L19e)Ribosomal protein L19e- Family
CB [auth AS]PF01775Ribosomal proteins 50S-L18Ae/60S-L20/60S-L18A (Ribosomal_L18A)Ribosomal proteins 50S-L18Ae/60S-L20/60S-L18AThis family includes: archaeal 50S ribosomal protein L18Ae, often referred to as L20e or LX; fungal 60S ribosomal protein L20; and higher eukaryote 60S ribosomal protein L18A.Domain
EB [auth AU]PF01776Ribosomal L22e protein family (Ribosomal_L22e)Ribosomal L22e protein family- Family
FB [auth AV]PF00238Ribosomal protein L14p/L23e (Ribosomal_L14)Ribosomal protein L14p/L23e- Domain
F [auth BH]PF01251Ribosomal protein S7e (Ribosomal_S7e)Ribosomal protein S7e- Family
HB [auth AX]PF00276Ribosomal protein L23 (Ribosomal_L23)Ribosomal protein L23- Family
JB [auth AZ]PF01777Ribosomal L27e protein family (Ribosomal_L27e)Ribosomal L27e protein family- Family
G [auth BI]PF01201Ribosomal protein S8e (Ribosomal_S8e)Ribosomal protein S8e- Family
H [auth BJ]PF00163Ribosomal protein S4/S9 N-terminal domain (Ribosomal_S4)Ribosomal protein S4/S9 N-terminal domain- Family
H [auth BJ]PF01479S4 domain (S4)S4 domainThe S4 domain is a small domain consisting of 60-65 amino acid residues that was detected in the bacterial ribosomal protein S4, eukaryotic ribosomal S9, two families of pseudouridine synthases, a novel family of predicted RNA methylases, a yeast pro ...The S4 domain is a small domain consisting of 60-65 amino acid residues that was detected in the bacterial ribosomal protein S4, eukaryotic ribosomal S9, two families of pseudouridine synthases, a novel family of predicted RNA methylases, a yeast protein containing a pseudouridine synthetase and a deaminase domain, bacterial tyrosyl-tRNA synthetases, and a number of uncharacterized, small proteins that may be involved in translation regulation [1]. The S4 domain probably mediates binding to RNA.
Domain
I [auth BL]PF00366Ribosomal protein S17 (Ribosomal_S17)Ribosomal protein S17- Domain
I [auth BL]PF16205Ribosomal_S17 N-terminal (Ribosomal_S17_N)Ribosomal_S17 N-terminal- Family

Gene Ontology: Gene Product Annotation Gene Ontology Database Homepage

ChainsPolymerMolecular FunctionBiological ProcessCellular Component
M [auth BW]RPS22A isoform 1---
IB [auth AY]60S ribosomal protein L26-A
A [auth BA]40S ribosomal protein S0-A
J [auth BN]40S ribosomal protein S13
K [auth BO]40S ribosomal protein S14-A
L [auth BV]40S ribosomal protein S21-A
N [auth BX]40S ribosomal protein S23-A
O [auth BY]40S ribosomal protein S24-A
P [auth Ba]RPS26B isoform 1---
Q [auth Bb]40S ribosomal protein S27-A
R [auth Be]40S ribosomal protein S30-A
S [auth BD]RPS3 isoform 1---
B [auth BB]RPS1A isoform 1---
T [auth BF]Rps5p
U [auth BK]40S ribosomal protein S10-A
V [auth BP]RPS15 isoform 1---
W [auth BQ]40S ribosomal protein S16-A
X [auth BR]40S ribosomal protein S17-A
Y [auth BS]40S ribosomal protein S18-A
Z [auth BT]40S ribosomal protein S19-A
AA [auth BU]RPS20 isoform 1---
BA [auth BZ]RPS25A isoform 1---
CA [auth Bc]RPS28A isoform 1---
C [auth BC]RPS2 isoform 1---
DA [auth Bd]RPS29A isoform 1---
EA [auth Bg]Guanine nucleotide-binding protein subunit beta-like protein
FA [auth Bf]Ubiquitin-40S ribosomal protein S31---
GA [auth BM]40S ribosomal protein S12---
HA [auth B5]18S rRNA---
IA [auth AA]60S ribosomal protein L2-A
JA [auth AB]60S ribosomal protein L3
KA [auth AC]RPL4A isoform 1---
LA [auth A1]25S rRNA---
MA [auth A3]5s rRNA---
D [auth BE]40S ribosomal protein S4-A
NA [auth A4]5.8 S rRNA---
OA [auth AD]RPL5 isoform 1---
PA [auth AE]60S ribosomal protein L6-A
QA [auth AF]60S ribosomal protein L7-A
RA [auth AG]60S ribosomal protein L8-A
SA [auth AH]60S ribosomal protein L9-A
TA [auth AI]RPL10 isoform 1---
UA [auth AJ]RPL11A isoform 1---
VA [auth AL]60S ribosomal protein L13-A
WA [auth AM]60S ribosomal protein L14-A
E [auth BG]40S ribosomal protein S6-A
XA [auth AN]60S ribosomal protein L15-A
YA [auth AO]60S ribosomal protein L16-A
ZA [auth AP]60S ribosomal protein L17-A
AB [auth AQ]60S ribosomal protein L18-A
BB [auth AR]60S ribosomal protein L19-A
CB [auth AS]60S ribosomal protein L20
DB [auth AT]60S ribosomal protein L21-A
EB [auth AU]60S ribosomal protein L22-A
FB [auth AV]60S ribosomal protein L23-A
GB [auth AW]RPL24A isoform 1---
F [auth BH]40S ribosomal protein S7-A
HB [auth AX]60S ribosomal protein L25
JB [auth AZ]60S ribosomal protein L27-A
KB [auth Aa]60S ribosomal protein L28
LB [auth Ab]RPL29 isoform 1---
MB [auth Ac]60S ribosomal protein L30
NB [auth Ad]60S ribosomal protein L31-A
OB [auth Ae]RPL32 isoform 1---
PB [auth Af]60S ribosomal protein L33-A
QB [auth Ag]60S ribosomal protein L34-A
G [auth BI]40S ribosomal protein S8-A
RB [auth Ah]60S ribosomal protein L35-A
SB [auth Ai]60S ribosomal protein L36-A
TB [auth Aj]60S ribosomal protein L37-A
UB [auth Ak]RPL38 isoform 1---
VB [auth Al]60S ribosomal protein L39
WB [auth Am]Ubiquitin-60S ribosomal protein L40
XB [auth An]60S ribosomal protein L41-A
YB [auth Ao]60S ribosomal protein L42-A
ZB [auth Ap]60S ribosomal protein L43-A
AC [auth E]RPL1A isoform 1---
H [auth BJ]40S ribosomal protein S9-A
BC [auth EC]Internal ribosome entry site---
I [auth BL]40S ribosomal protein S11-A

InterPro: Protein Family Classification InterPro Database Homepage

ChainsAccessionNameType
IB [auth AY]IPR041988Large ribosomal subunit protein uL24, KOW domainDomain
IB [auth AY]IPR014722Large ribosomal subunit protein uL2, domain 2Homologous Superfamily
IB [auth AY]IPR005824KOWDomain
IB [auth AY]IPR008991Translation protein SH3-like domain superfamilyHomologous Superfamily
IB [auth AY]IPR005756Large ribosomal subunit protein uL24, eukaryotic/archaealFamily
IB [auth AY]IPR005825Large ribosomal subunit protein uL24, conserved siteConserved Site
A [auth BA]IPR005707Small ribosomal subunit protein uS2, eukaryotic/archaealFamily
A [auth BA]IPR023591Small ribosomal subunit protein uS2, flavodoxin-like domain superfamilyHomologous Superfamily
A [auth BA]IPR018130Small ribosomal subunit protein uS2, conserved siteConserved Site
A [auth BA]IPR001865Small ribosomal subunit protein uS2Family
A [auth BA]IPR027498Small ribosomal subunit protein uS2, eukaryoticFamily
J [auth BN]IPR012606Small ribosomal subunit protein uS15, N-terminalDomain
J [auth BN]IPR009068uS15/NS1, RNA-binding domain superfamilyHomologous Superfamily
J [auth BN]IPR000589Small ribosomal subunit protein uS15Family
J [auth BN]IPR023029Small ribosomal subunit protein uS15, archaea/eukaryotesFamily
K [auth BO]IPR001971Small ribosomal subunit protein uS11Family
K [auth BO]IPR036967Small ribosomal subunit protein uS11 superfamilyHomologous Superfamily
K [auth BO]IPR018102Small ribosomal subunit protein uS11, conserved siteConserved Site
L [auth BV]IPR038579Small ribosomal subunit protein eS21 superfamilyHomologous Superfamily
L [auth BV]IPR018279Small ribosomal subunit protein eS21, conserved siteConserved Site
L [auth BV]IPR001931Small ribosomal subunit protein eS21Family
N [auth BX]IPR006032Small ribosomal subunit protein uS12Family
N [auth BX]IPR012340Nucleic acid-binding, OB-foldHomologous Superfamily
N [auth BX]IPR005680Small ribosomal subunit protein uS12, eukaryotic/archaealFamily
O [auth BY]IPR053709Eukaryotic Ribosomal Protein eS24Homologous Superfamily
O [auth BY]IPR001976Small ribosomal subunit protein eS24Family
O [auth BY]IPR012678Ribosomal protein uL23/eL15/eS24 core domain superfamilyHomologous Superfamily
O [auth BY]IPR018098Small ribosomal subunit protein eS24 conserved siteConserved Site
Q [auth Bb]IPR023407Small ribosomal subunit protein eS27, zinc-binding domain superfamilyHomologous Superfamily
Q [auth Bb]IPR000592Small ribosomal subunit protein eS27Family
Q [auth Bb]IPR011332Zinc-binding ribosomal proteinHomologous Superfamily
R [auth Be]IPR006846Small ribosomal subunit protein eS30Family
T [auth BF]IPR020606Small ribosomal subunit protein uS7, conserved siteConserved Site
T [auth BF]IPR000235Small ribosomal subunit protein uS7Family
T [auth BF]IPR036823Small ribosomal subunit protein uS7 domain superfamilyHomologous Superfamily
T [auth BF]IPR023798Small ribosomal subunit protein uS7 domainDomain
T [auth BF]IPR005716Ribosomal protein uS7, eukaryotic/archaealFamily
U [auth BK]IPR037447Small ribosomal subunit protein eS10Family
U [auth BK]IPR036388Winged helix-like DNA-binding domain superfamilyHomologous Superfamily
U [auth BK]IPR036390Winged helix DNA-binding domain superfamilyHomologous Superfamily
U [auth BK]IPR005326Plectin/eS10, N-terminalDomain
W [auth BQ]IPR020574Small ribosomal subunit protein uS9, conserved siteConserved Site
W [auth BQ]IPR020568Ribosomal protein uS5 domain 2-type superfamilyHomologous Superfamily
W [auth BQ]IPR000754Small ribosomal subunit protein uS9Family
W [auth BQ]IPR014721Small ribosomal subunit protein uS5 domain 2-type fold, subgroupHomologous Superfamily
X [auth BR]IPR036401Small ribosomal subunit protein eS17 superfamilyHomologous Superfamily
X [auth BR]IPR001210Small ribosomal subunit protein eS17Family
X [auth BR]IPR018273Small ribosomal subunit protein eS17, conserved siteConserved Site
Y [auth BS]IPR018269Small ribosomal subunit protein uS13, conserved siteConserved Site
Y [auth BS]IPR027437Small ribosomal subunit protein uS13, C-terminalHomologous Superfamily
Y [auth BS]IPR001892Small ribosomal subunit protein uS13Family
Y [auth BS]IPR010979Small ribosomal subunit protein uS13-like, H2THHomologous Superfamily
Z [auth BT]IPR001266Small ribosomal subunit protein eS19Family
Z [auth BT]IPR036388Winged helix-like DNA-binding domain superfamilyHomologous Superfamily
Z [auth BT]IPR018277Small ribosomal subunit protein eS19, conserved siteConserved Site
Z [auth BT]IPR036390Winged helix DNA-binding domain superfamilyHomologous Superfamily
EA [auth Bg]IPR019775WD40 repeat, conserved siteConserved Site
EA [auth Bg]IPR015943WD40/YVTN repeat-like-containing domain superfamilyHomologous Superfamily
EA [auth Bg]IPR036322WD40-repeat-containing domain superfamilyHomologous Superfamily
EA [auth Bg]IPR045223Small ribosomal subunit protein RACK1-likeFamily
EA [auth Bg]IPR001680WD40 repeatRepeat
EA [auth Bg]IPR020472G-protein beta WD-40 repeatRepeat
IA [auth AA]IPR022669Large ribosomal subunit protein uL2, C-terminalDomain
IA [auth AA]IPR014722Large ribosomal subunit protein uL2, domain 2Homologous Superfamily
IA [auth AA]IPR008991Translation protein SH3-like domain superfamilyHomologous Superfamily
IA [auth AA]IPR022671Large ribosomal subunit protein uL2, conserved siteConserved Site
IA [auth AA]IPR012340Nucleic acid-binding, OB-foldHomologous Superfamily
IA [auth AA]IPR022666Large ribosomal subunit protein uL2, RNA-binding domainDomain
IA [auth AA]IPR014726Large ribosomal subunit protein uL2, domain 3Homologous Superfamily
IA [auth AA]IPR002171Large ribosomal subunit protein uL2Family
JA [auth AB]IPR019926Large ribosomal subunit protein uL3, conserved siteConserved Site
JA [auth AB]IPR045077Large ribosomal subunit protein uL3, archaeal/eukaryotic-typeFamily
JA [auth AB]IPR044892Ribosomal protein L3, domain 3, archaeal-type superfamilyHomologous Superfamily
JA [auth AB]IPR000597Large ribosomal subunit protein uL3Family
JA [auth AB]IPR009000Translation protein, beta-barrel domain superfamilyHomologous Superfamily
D [auth BE]IPR018199Small ribosomal subunit protein eS4, N-terminal, conserved siteConserved Site
D [auth BE]IPR013843Small ribosomal subunit protein eS4, N-terminalDomain
D [auth BE]IPR032277Small ribosomal subunit protein eS4, C-terminal domainDomain
D [auth BE]IPR002942RNA-binding S4 domainDomain
D [auth BE]IPR013845Small ribosomal subunit protein eS4, central regionDomain
D [auth BE]IPR000876Small ribosomal subunit protein eS4Family
D [auth BE]IPR014722Large ribosomal subunit protein uL2, domain 2Homologous Superfamily
D [auth BE]IPR038237Small ribosomal subunit protein eS4, central domain superfamilyHomologous Superfamily
D [auth BE]IPR041982Small ribosomal subunit protein eS4, KOW domainDomain
D [auth BE]IPR036986RNA-binding S4 domain superfamilyHomologous Superfamily
D [auth BE]IPR005824KOWDomain
PA [auth AE]IPR049633Large ribosomal subunit protein eL6, conserved siteConserved Site
PA [auth AE]IPR014722Large ribosomal subunit protein uL2, domain 2Homologous Superfamily
PA [auth AE]IPR041997Large ribosomal subunit protein eL6, KOW domainDomain
PA [auth AE]IPR008991Translation protein SH3-like domain superfamilyHomologous Superfamily
PA [auth AE]IPR000915Large ribosomal subunit protein eL6Family
QA [auth AF]IPR035808Large ribosomal subunit protein uL30, eukaryotic/archaealDomain
QA [auth AF]IPR036919Large ribosomal subunit protein uL30, ferredoxin-like fold domain superfamilyHomologous Superfamily
QA [auth AF]IPR012988Large ribosomal subunit protein uL30, N-terminal, eukaryotesDomain
QA [auth AF]IPR039699Large ribosomal subunit protein uL30Family
QA [auth AF]IPR005998Large ribosomal subunit protein uL30, eukaryoticFamily
QA [auth AF]IPR016082Large ribosomal subunit protein uL30-like, ferredoxin-like fold domainDomain
QA [auth AF]IPR018038Large ribosomal subunit protein uL30, conserved siteConserved Site
RA [auth AG]IPR050257Large ribosomal subunit protein eL8/uL1-likeFamily
RA [auth AG]IPR004038Ribosomal protein eL8/eL30/eS12/Gadd45Domain
RA [auth AG]IPR004037Large ribosomal subunit protein eL8-like, conserved siteConserved Site
RA [auth AG]IPR029064Ribosomal protein eL30-like superfamilyHomologous Superfamily
RA [auth AG]IPR001921Large ribosomal subunit protein eL8, eukaryotaFamily
RA [auth AG]IPR018492Ribosomal protein eL8/Nhp2 familyFamily
SA [auth AH]IPR020040Large ribosomal subunit protein uL6, alpha-beta domainDomain
SA [auth AH]IPR002359Large ribosomal subunit protein uL6, conserved site-2Conserved Site
SA [auth AH]IPR036789Large ribosomal subunit protein uL6-like, alpha-beta domain superfamilyHomologous Superfamily
SA [auth AH]IPR000702Large ribosomal subunit protein uL6-likeFamily
VA [auth AL]IPR001380Large ribosomal subunit protein eL13Family
VA [auth AL]IPR018256Large ribosomal subunit protein eL13, conserved siteConserved Site
WA [auth AM]IPR014722Large ribosomal subunit protein uL2, domain 2Homologous Superfamily
WA [auth AM]IPR008991Translation protein SH3-like domain superfamilyHomologous Superfamily
WA [auth AM]IPR039660Large ribosomal subunit protein eL14Family
WA [auth AM]IPR041985Large ribosomal subunit protein eL14, KOW motifDomain
WA [auth AM]IPR002784Large ribosomal subunit protein eL14 domainDomain
WA [auth AM]IPR005824KOWDomain
E [auth BG]IPR014401Small ribosomal subunit protein eS6-likeFamily
E [auth BG]IPR001377Small ribosomal subunit protein eS6Family
E [auth BG]IPR018282Small ribosomal subunit protein eS6, conserved siteConserved Site
XA [auth AN]IPR012678Ribosomal protein uL23/eL15/eS24 core domain superfamilyHomologous Superfamily
XA [auth AN]IPR020925Large ribosomal subunit protein eL15, conserved siteConserved Site
XA [auth AN]IPR024794Large ribosomal subunit protein eL15 core domain superfamilyHomologous Superfamily
XA [auth AN]IPR000439Large ribosomal subunit protein eL15Family
YA [auth AO]IPR005755Large ribosomal subunit protein uL13, eukaryotic/archaealFamily
YA [auth AO]IPR023563Large ribosomal subunit protein uL13, conserved siteConserved Site
YA [auth AO]IPR005822Large ribosomal subunit protein uL13Family
YA [auth AO]IPR036899Large ribosomal subunit protein uL13 superfamilyHomologous Superfamily
ZA [auth AP]IPR018260Large ribosomal subunit protein uL22, conserved siteConserved Site
ZA [auth AP]IPR036394Ribosomal protein uL22 superfamilyHomologous Superfamily
ZA [auth AP]IPR001063Large ribosomal subunit protein uL22Family
ZA [auth AP]IPR005721Large ribosomal subunit protein uL22, eukaryotic/archaealFamily
AB [auth AQ]IPR021131Large ribosomal subunit protein uL15/eL18Domain
AB [auth AQ]IPR021132Large ribosomal subunit protein eL18, conserved siteConserved Site
AB [auth AQ]IPR000039Large ribosomal subunit protein eL18Family
AB [auth AQ]IPR036227Large ribosomal subunit protein uL15/eL18 superfamilyHomologous Superfamily
BB [auth AR]IPR015972Large ribosomal subunit protein eL19, domain 1Homologous Superfamily
BB [auth AR]IPR039547Large ribosomal subunit protein eL19Family
BB [auth AR]IPR023638Large ribosomal subunit protein eL19, conserved siteConserved Site
BB [auth AR]IPR035970Large ribosomal subunit protein eL19 superfamilyHomologous Superfamily
BB [auth AR]IPR000196Large ribosomal subunit protein eL19 domainDomain
BB [auth AR]IPR033935Large ribosomal subunit protein eL19, eukaryoticDomain
CB [auth AS]IPR028877Large ribosomal subunit protein eL20Family
CB [auth AS]IPR023573Large ribosomal subunit protein eL20 domainDomain
CB [auth AS]IPR021138Large ribosomal subunit protein eL20, eukaryotesFamily
DB [auth AT]IPR018259Large ribosomal subunit protein eL21, conserved siteConserved Site
DB [auth AT]IPR036948Large ribosomal subunit protein eL21 superfamilyHomologous Superfamily
DB [auth AT]IPR001147Large ribosomal subunit protein eL21Family
DB [auth AT]IPR008991Translation protein SH3-like domain superfamilyHomologous Superfamily
EB [auth AU]IPR002671Large ribosomal subunit protein eL22Family
EB [auth AU]IPR038526Large ribosomal subunit protein eL22 superfamilyHomologous Superfamily
FB [auth AV]IPR036853Large ribosomal subunit protein uL14 superfamilyHomologous Superfamily
FB [auth AV]IPR000218Large ribosomal subunit protein uL14Family
FB [auth AV]IPR019972Large ribosomal subunit protein uL14, conserved siteConserved Site
F [auth BH]IPR000554Small ribosomal subunit protein eS7Family
F [auth BH]IPR047861Small ribosomal subunit protein eS7, conserved siteConserved Site
HB [auth AX]IPR001014Large ribosomal subunit protein uL23, conserved siteConserved Site
HB [auth AX]IPR013025Large ribosomal subunit protein uL23-likeFamily
HB [auth AX]IPR012678Ribosomal protein uL23/eL15/eS24 core domain superfamilyHomologous Superfamily
HB [auth AX]IPR012677Nucleotide-binding alpha-beta plait domain superfamilyHomologous Superfamily
HB [auth AX]IPR005633Large ribosomal subunit protein uL23, N-terminalDomain
JB [auth AZ]IPR018262Large ribosomal subunit protein eL27, conserved siteConserved Site
JB [auth AZ]IPR038655Large ribosomal subunit protein eL27 superfamilyHomologous Superfamily
JB [auth AZ]IPR008991Translation protein SH3-like domain superfamilyHomologous Superfamily
JB [auth AZ]IPR001141Large ribosomal subunit protein eL27Family
JB [auth AZ]IPR041991Large ribosomal subunit protein eL27, KOW domainDomain
KB [auth Aa]IPR021131Large ribosomal subunit protein uL15/eL18Domain
KB [auth Aa]IPR030878Large ribosomal subunit protein uL15Family
KB [auth Aa]IPR001196Large ribosomal subunit protein uL15, conserved siteConserved Site
KB [auth Aa]IPR036227Large ribosomal subunit protein uL15/eL18 superfamilyHomologous Superfamily
MB [auth Ac]IPR022991Large ribosomal subunit protein eL30, conserved siteConserved Site
MB [auth Ac]IPR004038Ribosomal protein eL8/eL30/eS12/Gadd45Domain
MB [auth Ac]IPR039109Large ribosomal subunit protein eL30-likeFamily
MB [auth Ac]IPR029064Ribosomal protein eL30-like superfamilyHomologous Superfamily
NB [auth Ad]IPR020052Large ribosomal subunit protein eL31, conserved siteConserved Site
NB [auth Ad]IPR023621Large ribosomal subunit protein eL31 domain superfamilyHomologous Superfamily
NB [auth Ad]IPR000054Large ribosomal subunit protein eL31Family
PB [auth Af]IPR038661Large ribosomal subunit protein eL33 superfamilyHomologous Superfamily
PB [auth Af]IPR009000Translation protein, beta-barrel domain superfamilyHomologous Superfamily
PB [auth Af]IPR001780Large ribosomal subunit protein eL33Family
PB [auth Af]IPR018266Large ribosomal subunit protein eL33, conserved siteConserved Site
QB [auth Ag]IPR008195Large ribosomal subunit protein eL34Family
QB [auth Ag]IPR018065Large ribosomal subunit protein eL34, conserved siteConserved Site
G [auth BI]IPR001047Small ribosomal subunit protein eS8Family
G [auth BI]IPR042563Small ribosomal subunit protein eS8 subdomain, eukaryotesHomologous Superfamily
G [auth BI]IPR022309Ribosomal protein eS8/ribosomal biogenesis NSA2Family
G [auth BI]IPR018283Small ribosomal subunit protein eS8, conserved siteConserved Site
RB [auth Ah]IPR045059Large ribosomal subunit protein uL29, eukaryotesFamily
RB [auth Ah]IPR001854Large ribosomal subunit protein uL29Family
RB [auth Ah]IPR036049Large ribosomal subunit protein uL29 superfamilyHomologous Superfamily
RB [auth Ah]IPR018254Large ribosomal subunit protein uL29, conserved siteConserved Site
SB [auth Ai]IPR000509Large ribosomal subunit protein eL36Family
SB [auth Ai]IPR038097Large ribosomal subunit protein eL36 domain superfamilyHomologous Superfamily
TB [auth Aj]IPR011331Large ribosomal subunit protein eL37/eL43Homologous Superfamily
TB [auth Aj]IPR001569Large ribosomal subunit protein eL37Family
TB [auth Aj]IPR018267Large ribosomal subunit protein eL37, conserved siteConserved Site
TB [auth Aj]IPR011332Zinc-binding ribosomal proteinHomologous Superfamily
VB [auth Al]IPR023626Large ribosomal subunit protein eL39 domain superfamilyHomologous Superfamily
VB [auth Al]IPR000077Large ribosomal subunit protein eL39Family
VB [auth Al]IPR020083Large ribosomal subunit protein eL39, conserved siteConserved Site
WB [auth Am]IPR019954Ubiquitin conserved siteConserved Site
WB [auth Am]IPR038587Large ribosomal subunit protein eL40 superfamilyHomologous Superfamily
WB [auth Am]IPR000626Ubiquitin-like domainDomain
WB [auth Am]IPR019956Ubiquitin domainDomain
WB [auth Am]IPR050158Ubiquitin and ubiquitin-likeFamily
WB [auth Am]IPR001975Large ribosomal subunit protein eL40 domainDomain
WB [auth Am]IPR029071Ubiquitin-like domain superfamilyHomologous Superfamily
XB [auth An]IPR007836Large ribosomal subunit protein eS32Family
YB [auth Ao]IPR053708Eukaryotic Ribosomal Large Subunit eL42Homologous Superfamily
YB [auth Ao]IPR011332Zinc-binding ribosomal proteinHomologous Superfamily
YB [auth Ao]IPR000552Large ribosomal subunit protein eL42Family
ZB [auth Ap]IPR002674Large ribosomal subunit protein eL43Family
ZB [auth Ap]IPR011332Zinc-binding ribosomal proteinHomologous Superfamily
ZB [auth Ap]IPR011331Large ribosomal subunit protein eL37/eL43Homologous Superfamily
ZB [auth Ap]IPR050522Eukaryotic ribosomal protein eL43Family
H [auth BJ]IPR002942RNA-binding S4 domainDomain
H [auth BJ]IPR022801Small ribosomal subunit protein uS4Family
H [auth BJ]IPR018079Small ribosomal subunit protein uS4, conserved siteConserved Site
H [auth BJ]IPR001912Small ribosomal subunit protein uS4, N-terminalDomain
H [auth BJ]IPR005710Small ribosomal subunit protein uS4, eukaryotic/archaealFamily
H [auth BJ]IPR036986RNA-binding S4 domain superfamilyHomologous Superfamily
I [auth BL]IPR019979Small ribosomal subunit protein uS17, conserved siteConserved Site
I [auth BL]IPR032440Small ribosomal subunit protein uS17, N-terminalDomain
I [auth BL]IPR012340Nucleic acid-binding, OB-foldHomologous Superfamily
I [auth BL]IPR000266Small ribosomal subunit protein uS17Family
I [auth BL]IPR028333Small ribosomal subunit protein uS17, archaeal/eukaryoticFamily

Protein Modification Annotation

Modified Residue(s)
ChainResidue(s)Description
HA [auth B5]3AU Parent Component: U

HA [auth B5]4AC
HA [auth B5]A2M Parent Component: A

HA [auth B5]G7M Parent Component: G

HA [auth B5]MA6 Parent Component: A

HA [auth B5]OMC Parent Component: C

HA [auth B5]OMG Parent Component: G

HA [auth B5]OMU Parent Component: U

JA [auth AB]HIC Parent Component: HIS

RESID:  AA0317

PSI-MOD :  1'-methyl-L-histidine MOD:00322
LA [auth A1]1MA Parent Component: A

RESID:  AA0317

LA [auth A1]5MC Parent Component: C

RESID:  AA0317

LA [auth A1]A2M Parent Component: A

RESID:  AA0317

LA [auth A1]OMC Parent Component: C

RESID:  AA0317

LA [auth A1]OMG Parent Component: G

RESID:  AA0317

LA [auth A1]OMU Parent Component: U

RESID:  AA0317

LA [auth A1]UR3 Parent Component: U

RESID:  AA0317