8EP9 | pdb_00008ep9

The capsid structure of Human Parvovirus 4

External Resource: Annotation

Domain Annotation: ECOD Classification
Gene Ontology: Gene Product Annotation
InterPro: Protein Family Classification

Domain Annotation: ECOD Classification ECOD Database Homepage

Chains	Family Name	Domain Identifier	Architecture	Possible Homology	Homology	Topology	Family	Provenance Source (Version)
ZA [auth z]	GTP_EFTU_D2	e8ep9z1	A: beta barrels	X: RNase A-like	H: Cytochrome P450	T: Cytochrome P450	F: GTP_EFTU_D2	ECOD (v294.2)
Z	GTP_EFTU_D2	e8ep9Z1	A: beta barrels	X: RNase A-like	H: Cytochrome P450	T: Cytochrome P450	F: GTP_EFTU_D2	ECOD (v294.2)
YA [auth y]	GTP_EFTU_D2	e8ep9y1	A: beta barrels	X: RNase A-like	H: Cytochrome P450	T: Cytochrome P450	F: GTP_EFTU_D2	ECOD (v294.2)
Y	GTP_EFTU_D2	e8ep9Y1	A: beta barrels	X: RNase A-like	H: Cytochrome P450	T: Cytochrome P450	F: GTP_EFTU_D2	ECOD (v294.2)
XA [auth x]	GTP_EFTU_D2	e8ep9x1	A: beta barrels	X: RNase A-like	H: Cytochrome P450	T: Cytochrome P450	F: GTP_EFTU_D2	ECOD (v294.2)
X	GTP_EFTU_D2	e8ep9X1	A: beta barrels	X: RNase A-like	H: Cytochrome P450	T: Cytochrome P450	F: GTP_EFTU_D2	ECOD (v294.2)
WA [auth w]	GTP_EFTU_D2	e8ep9w1	A: beta barrels	X: RNase A-like	H: Cytochrome P450	T: Cytochrome P450	F: GTP_EFTU_D2	ECOD (v294.2)
W	GTP_EFTU_D2	e8ep9W1	A: beta barrels	X: RNase A-like	H: Cytochrome P450	T: Cytochrome P450	F: GTP_EFTU_D2	ECOD (v294.2)
VA [auth v]	GTP_EFTU_D2	e8ep9v1	A: beta barrels	X: RNase A-like	H: Cytochrome P450	T: Cytochrome P450	F: GTP_EFTU_D2	ECOD (v294.2)
V	GTP_EFTU_D2	e8ep9V1	A: beta barrels	X: RNase A-like	H: Cytochrome P450	T: Cytochrome P450	F: GTP_EFTU_D2	ECOD (v294.2)
UA [auth u]	GTP_EFTU_D2	e8ep9u1	A: beta barrels	X: RNase A-like	H: Cytochrome P450	T: Cytochrome P450	F: GTP_EFTU_D2	ECOD (v294.2)
U	GTP_EFTU_D2	e8ep9U1	A: beta barrels	X: RNase A-like	H: Cytochrome P450	T: Cytochrome P450	F: GTP_EFTU_D2	ECOD (v294.2)
TA [auth t]	GTP_EFTU_D2	e8ep9t1	A: beta barrels	X: RNase A-like	H: Cytochrome P450	T: Cytochrome P450	F: GTP_EFTU_D2	ECOD (v294.2)
T	GTP_EFTU_D2	e8ep9T1	A: beta barrels	X: RNase A-like	H: Cytochrome P450	T: Cytochrome P450	F: GTP_EFTU_D2	ECOD (v294.2)
SA [auth s]	GTP_EFTU_D2	e8ep9s1	A: beta barrels	X: RNase A-like	H: Cytochrome P450	T: Cytochrome P450	F: GTP_EFTU_D2	ECOD (v294.2)
S	GTP_EFTU_D2	e8ep9S1	A: beta barrels	X: RNase A-like	H: Cytochrome P450	T: Cytochrome P450	F: GTP_EFTU_D2	ECOD (v294.2)
RA [auth r]	GTP_EFTU_D2	e8ep9r1	A: beta barrels	X: RNase A-like	H: Cytochrome P450	T: Cytochrome P450	F: GTP_EFTU_D2	ECOD (v294.2)
R	GTP_EFTU_D2	e8ep9R1	A: beta barrels	X: RNase A-like	H: Cytochrome P450	T: Cytochrome P450	F: GTP_EFTU_D2	ECOD (v294.2)
QA [auth q]	GTP_EFTU_D2	e8ep9q1	A: beta barrels	X: RNase A-like	H: Cytochrome P450	T: Cytochrome P450	F: GTP_EFTU_D2	ECOD (v294.2)
Q	GTP_EFTU_D2	e8ep9Q1	A: beta barrels	X: RNase A-like	H: Cytochrome P450	T: Cytochrome P450	F: GTP_EFTU_D2	ECOD (v294.2)
PA [auth p]	GTP_EFTU_D2	e8ep9p1	A: beta barrels	X: RNase A-like	H: Cytochrome P450	T: Cytochrome P450	F: GTP_EFTU_D2	ECOD (v294.2)
P	GTP_EFTU_D2	e8ep9P1	A: beta barrels	X: RNase A-like	H: Cytochrome P450	T: Cytochrome P450	F: GTP_EFTU_D2	ECOD (v294.2)
OA [auth o]	GTP_EFTU_D2	e8ep9o1	A: beta barrels	X: RNase A-like	H: Cytochrome P450	T: Cytochrome P450	F: GTP_EFTU_D2	ECOD (v294.2)
O	GTP_EFTU_D2	e8ep9O1	A: beta barrels	X: RNase A-like	H: Cytochrome P450	T: Cytochrome P450	F: GTP_EFTU_D2	ECOD (v294.2)
NA [auth n]	GTP_EFTU_D2	e8ep9n1	A: beta barrels	X: RNase A-like	H: Cytochrome P450	T: Cytochrome P450	F: GTP_EFTU_D2	ECOD (v294.2)
N	GTP_EFTU_D2	e8ep9N1	A: beta barrels	X: RNase A-like	H: Cytochrome P450	T: Cytochrome P450	F: GTP_EFTU_D2	ECOD (v294.2)
MA [auth m]	GTP_EFTU_D2	e8ep9m1	A: beta barrels	X: RNase A-like	H: Cytochrome P450	T: Cytochrome P450	F: GTP_EFTU_D2	ECOD (v294.2)
M	GTP_EFTU_D2	e8ep9M1	A: beta barrels	X: RNase A-like	H: Cytochrome P450	T: Cytochrome P450	F: GTP_EFTU_D2	ECOD (v294.2)
LA [auth l]	GTP_EFTU_D2	e8ep9l1	A: beta barrels	X: RNase A-like	H: Cytochrome P450	T: Cytochrome P450	F: GTP_EFTU_D2	ECOD (v294.2)
L	GTP_EFTU_D2	e8ep9L1	A: beta barrels	X: RNase A-like	H: Cytochrome P450	T: Cytochrome P450	F: GTP_EFTU_D2	ECOD (v294.2)
KA [auth k]	GTP_EFTU_D2	e8ep9k1	A: beta barrels	X: RNase A-like	H: Cytochrome P450	T: Cytochrome P450	F: GTP_EFTU_D2	ECOD (v294.2)
K	GTP_EFTU_D2	e8ep9K1	A: beta barrels	X: RNase A-like	H: Cytochrome P450	T: Cytochrome P450	F: GTP_EFTU_D2	ECOD (v294.2)
JA [auth j]	GTP_EFTU_D2	e8ep9j1	A: beta barrels	X: RNase A-like	H: Cytochrome P450	T: Cytochrome P450	F: GTP_EFTU_D2	ECOD (v294.2)
J	GTP_EFTU_D2	e8ep9J1	A: beta barrels	X: RNase A-like	H: Cytochrome P450	T: Cytochrome P450	F: GTP_EFTU_D2	ECOD (v294.2)
IA [auth i]	GTP_EFTU_D2	e8ep9i1	A: beta barrels	X: RNase A-like	H: Cytochrome P450	T: Cytochrome P450	F: GTP_EFTU_D2	ECOD (v294.2)
I	GTP_EFTU_D2	e8ep9I1	A: beta barrels	X: RNase A-like	H: Cytochrome P450	T: Cytochrome P450	F: GTP_EFTU_D2	ECOD (v294.2)
HB [auth 8]	GTP_EFTU_D2	e8ep981	A: beta barrels	X: RNase A-like	H: Cytochrome P450	T: Cytochrome P450	F: GTP_EFTU_D2	ECOD (v294.2)
HA [auth h]	GTP_EFTU_D2	e8ep9h1	A: beta barrels	X: RNase A-like	H: Cytochrome P450	T: Cytochrome P450	F: GTP_EFTU_D2	ECOD (v294.2)
H	GTP_EFTU_D2	e8ep9H1	A: beta barrels	X: RNase A-like	H: Cytochrome P450	T: Cytochrome P450	F: GTP_EFTU_D2	ECOD (v294.2)
GB [auth 7]	GTP_EFTU_D2	e8ep971	A: beta barrels	X: RNase A-like	H: Cytochrome P450	T: Cytochrome P450	F: GTP_EFTU_D2	ECOD (v294.2)
GA [auth g]	GTP_EFTU_D2	e8ep9g1	A: beta barrels	X: RNase A-like	H: Cytochrome P450	T: Cytochrome P450	F: GTP_EFTU_D2	ECOD (v294.2)
G	GTP_EFTU_D2	e8ep9G1	A: beta barrels	X: RNase A-like	H: Cytochrome P450	T: Cytochrome P450	F: GTP_EFTU_D2	ECOD (v294.2)
FB [auth 6]	GTP_EFTU_D2	e8ep961	A: beta barrels	X: RNase A-like	H: Cytochrome P450	T: Cytochrome P450	F: GTP_EFTU_D2	ECOD (v294.2)
FA [auth f]	GTP_EFTU_D2	e8ep9f1	A: beta barrels	X: RNase A-like	H: Cytochrome P450	T: Cytochrome P450	F: GTP_EFTU_D2	ECOD (v294.2)
F	GTP_EFTU_D2	e8ep9F1	A: beta barrels	X: RNase A-like	H: Cytochrome P450	T: Cytochrome P450	F: GTP_EFTU_D2	ECOD (v294.2)
EB [auth 5]	GTP_EFTU_D2	e8ep951	A: beta barrels	X: RNase A-like	H: Cytochrome P450	T: Cytochrome P450	F: GTP_EFTU_D2	ECOD (v294.2)
EA [auth e]	GTP_EFTU_D2	e8ep9e1	A: beta barrels	X: RNase A-like	H: Cytochrome P450	T: Cytochrome P450	F: GTP_EFTU_D2	ECOD (v294.2)
E	GTP_EFTU_D2	e8ep9E1	A: beta barrels	X: RNase A-like	H: Cytochrome P450	T: Cytochrome P450	F: GTP_EFTU_D2	ECOD (v294.2)
DB [auth 4]	GTP_EFTU_D2	e8ep941	A: beta barrels	X: RNase A-like	H: Cytochrome P450	T: Cytochrome P450	F: GTP_EFTU_D2	ECOD (v294.2)
DA [auth d]	GTP_EFTU_D2	e8ep9d1	A: beta barrels	X: RNase A-like	H: Cytochrome P450	T: Cytochrome P450	F: GTP_EFTU_D2	ECOD (v294.2)
D	GTP_EFTU_D2	e8ep9D1	A: beta barrels	X: RNase A-like	H: Cytochrome P450	T: Cytochrome P450	F: GTP_EFTU_D2	ECOD (v294.2)
CB [auth 3]	GTP_EFTU_D2	e8ep931	A: beta barrels	X: RNase A-like	H: Cytochrome P450	T: Cytochrome P450	F: GTP_EFTU_D2	ECOD (v294.2)
CA [auth c]	GTP_EFTU_D2	e8ep9c1	A: beta barrels	X: RNase A-like	H: Cytochrome P450	T: Cytochrome P450	F: GTP_EFTU_D2	ECOD (v294.2)
C	GTP_EFTU_D2	e8ep9C1	A: beta barrels	X: RNase A-like	H: Cytochrome P450	T: Cytochrome P450	F: GTP_EFTU_D2	ECOD (v294.2)
BB [auth 2]	GTP_EFTU_D2	e8ep921	A: beta barrels	X: RNase A-like	H: Cytochrome P450	T: Cytochrome P450	F: GTP_EFTU_D2	ECOD (v294.2)
BA [auth b]	GTP_EFTU_D2	e8ep9b1	A: beta barrels	X: RNase A-like	H: Cytochrome P450	T: Cytochrome P450	F: GTP_EFTU_D2	ECOD (v294.2)
B	GTP_EFTU_D2	e8ep9B1	A: beta barrels	X: RNase A-like	H: Cytochrome P450	T: Cytochrome P450	F: GTP_EFTU_D2	ECOD (v294.2)
AB [auth 1]	GTP_EFTU_D2	e8ep911	A: beta barrels	X: RNase A-like	H: Cytochrome P450	T: Cytochrome P450	F: GTP_EFTU_D2	ECOD (v294.2)
AA [auth a]	GTP_EFTU_D2	e8ep9a1	A: beta barrels	X: RNase A-like	H: Cytochrome P450	T: Cytochrome P450	F: GTP_EFTU_D2	ECOD (v294.2)
A	GTP_EFTU_D2	e8ep9A1	A: beta barrels	X: RNase A-like	H: Cytochrome P450	T: Cytochrome P450	F: GTP_EFTU_D2	ECOD (v294.2)

Gene Ontology: Gene Product Annotation Gene Ontology Database Homepage

Chains	Polymer	Molecular Function	Biological Process	Cellular Component
A, AA [auth a], AB [auth 1], B, BA [auth b], A, AA [auth a], AB [auth 1], B, BA [auth b], BB [auth 2], C, CA [auth c], CB [auth 3], D, DA [auth d], DB [auth 4], E, EA [auth e], EB [auth 5], F, FA [auth f], FB [auth 6], G, GA [auth g], GB [auth 7], H, HA [auth h], HB [auth 8], I, IA [auth i], J, JA [auth j], K, KA [auth k], L, LA [auth l], M, MA [auth m], N, NA [auth n], O, OA [auth o], P, PA [auth p], Q, QA [auth q], R, RA [auth r], S, SA [auth s], T, TA [auth t], U, UA [auth u], V, VA [auth v], W, WA [auth w], X, XA [auth x], Y, YA [auth y], Z, ZA [auth z]	Human Parvovirus 4	structural molecule activity	-	viral capsid icosahedral viral capsid virion component T=1 icosahedral viral capsid

InterPro: Protein Family Classification InterPro Database Homepage

Chains	Accession	Name	Type
A, AA [auth a], AB [auth 1], B, BA [auth b], A, AA [auth a], AB [auth 1], B, BA [auth b], BB [auth 2], C, CA [auth c], CB [auth 3], D, DA [auth d], DB [auth 4], E, EA [auth e], EB [auth 5], F, FA [auth f], FB [auth 6], G, GA [auth g], GB [auth 7], H, HA [auth h], HB [auth 8], I, IA [auth i], J, JA [auth j], K, KA [auth k], L, LA [auth l], M, MA [auth m], N, NA [auth n], O, OA [auth o], P, PA [auth p], Q, QA [auth q], R, RA [auth r], S, SA [auth s], T, TA [auth t], U, UA [auth u], V, VA [auth v], W, WA [auth w], X, XA [auth x], Y, YA [auth y], Z, ZA [auth z]	IPR013607	Phospholipase A2-like domain	Domain
A, AA [auth a], AB [auth 1], B, BA [auth b], A, AA [auth a], AB [auth 1], B, BA [auth b], BB [auth 2], C, CA [auth c], CB [auth 3], D, DA [auth d], DB [auth 4], E, EA [auth e], EB [auth 5], F, FA [auth f], FB [auth 6], G, GA [auth g], GB [auth 7], H, HA [auth h], HB [auth 8], I, IA [auth i], J, JA [auth j], K, KA [auth k], L, LA [auth l], M, MA [auth m], N, NA [auth n], O, OA [auth o], P, PA [auth p], Q, QA [auth q], R, RA [auth r], S, SA [auth s], T, TA [auth t], U, UA [auth u], V, VA [auth v], W, WA [auth w], X, XA [auth x], Y, YA [auth y], Z, ZA [auth z]	IPR016184	Capsid/spike protein, ssDNA virus	Homologous Superfamily
A, AA [auth a], AB [auth 1], B, BA [auth b], A, AA [auth a], AB [auth 1], B, BA [auth b], BB [auth 2], C, CA [auth c], CB [auth 3], D, DA [auth d], DB [auth 4], E, EA [auth e], EB [auth 5], F, FA [auth f], FB [auth 6], G, GA [auth g], GB [auth 7], H, HA [auth h], HB [auth 8], I, IA [auth i], J, JA [auth j], K, KA [auth k], L, LA [auth l], M, MA [auth m], N, NA [auth n], O, OA [auth o], P, PA [auth p], Q, QA [auth q], R, RA [auth r], S, SA [auth s], T, TA [auth t], U, UA [auth u], V, VA [auth v], W, WA [auth w], X, XA [auth x], Y, YA [auth y], Z, ZA [auth z]	IPR001403	Coat protein VP1/VP2, Parvovirus	Domain
A, AA [auth a], AB [auth 1], B, BA [auth b], A, AA [auth a], AB [auth 1], B, BA [auth b], BB [auth 2], C, CA [auth c], CB [auth 3], D, DA [auth d], DB [auth 4], E, EA [auth e], EB [auth 5], F, FA [auth f], FB [auth 6], G, GA [auth g], GB [auth 7], H, HA [auth h], HB [auth 8], I, IA [auth i], J, JA [auth j], K, KA [auth k], L, LA [auth l], M, MA [auth m], N, NA [auth n], O, OA [auth o], P, PA [auth p], Q, QA [auth q], R, RA [auth r], S, SA [auth s], T, TA [auth t], U, UA [auth u], V, VA [auth v], W, WA [auth w], X, XA [auth x], Y, YA [auth y], Z, ZA [auth z]	IPR036952	Parvovirus coat protein VP1/VP2	Homologous Superfamily

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RCSB PDB Core Operations are funded by the U.S. National Science Foundation (DBI-2321666), the US Department of Energy (DE-SC0019749), and the National Cancer Institute, National Institute of Allergy and Infectious Diseases, and National Institute of General Medical Sciences of the National Institutes of Health under grant R01GM157729. RCSB PDB uses resources of the National Energy Research Scientific Computing Center (NERSC), a Department of Energy User Facility.