8EK1
Cryo-EM structure of a potent anti-malarial antibody L9 in complex with Plasmodium falciparum circumsporozoite protein (PfCSP)(dominant class)
Domain Annotation: ECOD Classification ECOD Database Homepage
Chains | Family Name | Domain Identifier | Architecture | Possible Homology | Homology | Topology | Family | Provenance Source (Version) |
---|---|---|---|---|---|---|---|---|
A | F_UNCLASSIFIED | e8ek1A1 | A: beta sandwiches | X: Immunoglobulin-like beta-sandwich | H: Immunoglobulin-related | T: Immunoglobulin/Fibronectin type III/E set domains/PapD-like | F: F_UNCLASSIFIED | ECOD (1.6) |
C | F_UNCLASSIFIED | e8ek1C2 | A: beta sandwiches | X: Immunoglobulin-like beta-sandwich | H: Immunoglobulin-related | T: Immunoglobulin/Fibronectin type III/E set domains/PapD-like | F: F_UNCLASSIFIED | ECOD (1.6) |
E [auth H] | F_UNCLASSIFIED | e8ek1H1 | A: beta sandwiches | X: Immunoglobulin-like beta-sandwich | H: Immunoglobulin-related | T: Immunoglobulin/Fibronectin type III/E set domains/PapD-like | F: F_UNCLASSIFIED | ECOD (1.6) |
B | F_UNCLASSIFIED | e8ek1B1 | A: beta sandwiches | X: Immunoglobulin-like beta-sandwich | H: Immunoglobulin-related | T: Immunoglobulin/Fibronectin type III/E set domains/PapD-like | F: F_UNCLASSIFIED | ECOD (1.6) |
D | F_UNCLASSIFIED | e8ek1D2 | A: beta sandwiches | X: Immunoglobulin-like beta-sandwich | H: Immunoglobulin-related | T: Immunoglobulin/Fibronectin type III/E set domains/PapD-like | F: F_UNCLASSIFIED | ECOD (1.6) |
F [auth L] | F_UNCLASSIFIED | e8ek1L1 | A: beta sandwiches | X: Immunoglobulin-like beta-sandwich | H: Immunoglobulin-related | T: Immunoglobulin/Fibronectin type III/E set domains/PapD-like | F: F_UNCLASSIFIED | ECOD (1.6) |
SAbDab Antibody Annotation SAbDab Database Homepage
Chain | Chain Class | Chain Subclass | Chain Type | Antigen Name(s) | Provenance Source |
---|---|---|---|---|---|
A, C, E [auth H] | Heavy Chain | IGHV3 | - | circumsporozoite protein | SAbDab (2024-08-30) |
B, D, F [auth L] | Light Chain | IGKV1 | Kappa | circumsporozoite protein | SAbDab (2024-08-30) |
Gene Ontology: Gene Product Annotation Gene Ontology Database Homepage
Chains | Polymer | Molecular Function | Biological Process | Cellular Component |
---|---|---|---|---|
A, C, E [auth H] | L9 Fab heavy chain | - | - | - |
B, D, F [auth L] | L9 Fab light chain | - | - | - |
G [auth P] | Circumsporozoite protein |
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InterPro: Protein Family Classification InterPro Database Homepage
Chains | Accession | Name | Type |
---|---|---|---|
G [auth P] | IPR000884 | Thrombospondin type-1 (TSP1) repeat | Repeat |
G [auth P] | IPR003067 | Plasmodium circumsporozoite protein | Family |
G [auth P] | IPR036383 | Thrombospondin type-1 (TSP1) repeat superfamily | Homologous Superfamily |
G [auth P] | IPR051860 | Plasmodium Circumsporozoite Invasion Protein | Family |