8E3I
CRYO-EM STRUCTURE OF the human MPSF IN COMPLEX WITH THE AUUAAA poly(A) signal
Domain Annotation: SCOP2 Classification SCOP2 Database Homepage
Chains | Type | Family Name | Domain Identifier | Family Identifier | Provenance Source (Version) |
---|---|---|---|---|---|
B [auth C] | SCOP2B Superfamily | CCCH zinc finger-like | 8051782 | 3001741 | SCOP2B (2022-06-29) |
B [auth C] | SCOP2B Superfamily | CCCH zinc finger-like | 8051781 | 3001741 | SCOP2B (2022-06-29) |
Domain Annotation: ECOD Classification ECOD Database Homepage
Chains | Family Name | Domain Identifier | Architecture | Possible Homology | Homology | Topology | Family | Provenance Source (Version) |
---|---|---|---|---|---|---|---|---|
A | CPSF_A_N | e8e3iA3 | A: beta duplicates or obligate multimers | X: beta-propeller-like | H: beta-propeller | T: 7-bladed | F: CPSF_A_N | ECOD (1.6) |
A | MMS1_N_C | e8e3iA2 | A: beta duplicates or obligate multimers | X: beta-propeller-like | H: beta-propeller | T: 7-bladed | F: MMS1_N_C | ECOD (1.6) |
A | MMS1_N_N | e8e3iA4 | A: beta duplicates or obligate multimers | X: beta-propeller-like | H: beta-propeller | T: 7-bladed | F: MMS1_N_N | ECOD (1.6) |
A | CPSF_A_C | e8e3iA1 | A: alpha arrays | X: HTH | H: HTH | T: tri-helical | F: CPSF_A_C | ECOD (1.6) |
B [auth C] | Torus | e8e3iC2 | A: few secondary structure elements | X: CCCH zinc finger | H: CCCH zinc finger (From Topology) | T: CCCH zinc finger | F: Torus | ECOD (1.6) |
B [auth C] | zf-CCCH_6 | e8e3iC1 | A: few secondary structure elements | X: CCCH zinc finger | H: CCCH zinc finger (From Topology) | T: CCCH zinc finger | F: zf-CCCH_6 | ECOD (1.6) |
D [auth B] | ANAPC4_WD40_8 | e8e3iB1 | A: beta duplicates or obligate multimers | X: beta-propeller-like | H: beta-propeller | T: 7-bladed | F: ANAPC4_WD40_8 | ECOD (1.6) |
Protein Family Annotation Pfam Database Homepage
Chains | Accession | Name | Description | Comments | Source |
---|---|---|---|---|---|
PF10433 | RSE1/DDB1/CPSF1 first beta-propeller (Beta-prop_RSE1_1st) | Mono-functional DNA-alkylating methyl methanesulfonate N-term | - | Repeat | |
PF03178 | CPSF A subunit region (CPSF_A) | CPSF A subunit region | - | Repeat | |
B [auth C] | PF15663 | Zinc-finger containing family (zf-CCCH_3) | Zinc-finger containing family | - | Family |
D [auth B] | PF00400 | WD domain, G-beta repeat (WD40) | WD domain, G-beta repeat | - | Repeat |
Gene Ontology: Gene Product Annotation Gene Ontology Database Homepage
InterPro: Protein Family Classification InterPro Database Homepage
Chains | Accession | Name | Type |
---|---|---|---|
IPR018846 | RSE1/DDB1/CPSF1, first beta-propeller domain | Domain | |
IPR015943 | WD40/YVTN repeat-like-containing domain superfamily | Homologous Superfamily | |
IPR004871 | Cleavage/polyadenylation specificity factor, A subunit, C-terminal | Domain | |
IPR050358 | RSE1/DDB1/CFT1/CPSF1 | Family | |
B [auth C] | IPR036875 | Zinc finger, CCHC-type superfamily | Homologous Superfamily |
B [auth C] | IPR000571 | Zinc finger, CCCH-type | Domain |
B [auth C] | IPR036855 | Zinc finger, CCCH-type superfamily | Homologous Superfamily |
B [auth C] | IPR041686 | Zinc-finger CCCH domain | Domain |
B [auth C] | IPR001878 | Zinc finger, CCHC-type | Domain |
B [auth C] | IPR045348 | CPSF complex subunit CPSF4-like | Family |
D [auth B] | IPR008160 | Collagen triple helix repeat | Repeat |
D [auth B] | IPR045245 | Pre-mRNA 3' end processing protein Pfs2-like | Family |
D [auth B] | IPR036322 | WD40-repeat-containing domain superfamily | Homologous Superfamily |
D [auth B] | IPR001680 | WD40 repeat | Repeat |
D [auth B] | IPR015943 | WD40/YVTN repeat-like-containing domain superfamily | Homologous Superfamily |