8DZI
Structure of SARS-CoV-2 Omicron BA.1.1.529 Spike trimer with one RBD down in complex with the Fab fragment of human neutralizing antibody MB.02
Domain Annotation: ECOD Classification ECOD Database Homepage
Chains | Family Name | Domain Identifier | Architecture | Possible Homology | Homology | Topology | Family | Provenance Source (Version) |
---|---|---|---|---|---|---|---|---|
A [auth C] | Spike_NTD | e8dziC3 | A: beta sandwiches | X: jelly-roll | H: Concanavalin A-like | T: Concanavalin A-like lectins/glucanases | F: Spike_NTD | ECOD (1.6) |
A [auth C] | Spike_rec_bind_1 | e8dziC2 | A: beta complex topology | X: Beta domain of coronavirus spike glycoprotein (From Topology) | H: Beta domain of coronavirus spike glycoprotein (From Topology) | T: Beta domain of coronavirus spike glycoprotein | F: Spike_rec_bind_1 | ECOD (1.6) |
A [auth C] | Spike_rec_bind | e8dziC1 | A: a+b three layers | X: Coronavirus spike protein receptor-binding domain (From Homology) | H: Coronavirus spike protein receptor-binding domain | T: Beta-coronavirus spike protein receptor-binding domain | F: Spike_rec_bind | ECOD (1.6) |
A [auth C] | Corona_S2 | e8dziC4 | A: a+b complex topology | X: S2 subunit of coronavirus spike glycoprotein (From Topology) | H: S2 subunit of coronavirus spike glycoprotein (From Topology) | T: S2 subunit of coronavirus spike glycoprotein | F: Corona_S2 | ECOD (1.6) |
D [auth A] | Spike_NTD | e8dziA2 | A: beta sandwiches | X: jelly-roll | H: Concanavalin A-like | T: Concanavalin A-like lectins/glucanases | F: Spike_NTD | ECOD (1.6) |
D [auth A] | Spike_rec_bind_1 | e8dziA3 | A: beta complex topology | X: Beta domain of coronavirus spike glycoprotein (From Topology) | H: Beta domain of coronavirus spike glycoprotein (From Topology) | T: Beta domain of coronavirus spike glycoprotein | F: Spike_rec_bind_1 | ECOD (1.6) |
D [auth A] | Spike_rec_bind | e8dziA1 | A: a+b three layers | X: Coronavirus spike protein receptor-binding domain (From Homology) | H: Coronavirus spike protein receptor-binding domain | T: Beta-coronavirus spike protein receptor-binding domain | F: Spike_rec_bind | ECOD (1.6) |
D [auth A] | Corona_S2 | e8dziA4 | A: a+b complex topology | X: S2 subunit of coronavirus spike glycoprotein (From Topology) | H: S2 subunit of coronavirus spike glycoprotein (From Topology) | T: S2 subunit of coronavirus spike glycoprotein | F: Corona_S2 | ECOD (1.6) |
G [auth E] | Spike_NTD | e8dziE2 | A: beta sandwiches | X: jelly-roll | H: Concanavalin A-like | T: Concanavalin A-like lectins/glucanases | F: Spike_NTD | ECOD (1.6) |
G [auth E] | Spike_rec_bind_1 | e8dziE4 | A: beta complex topology | X: Beta domain of coronavirus spike glycoprotein (From Topology) | H: Beta domain of coronavirus spike glycoprotein (From Topology) | T: Beta domain of coronavirus spike glycoprotein | F: Spike_rec_bind_1 | ECOD (1.6) |
G [auth E] | Spike_rec_bind | e8dziE1 | A: a+b three layers | X: Coronavirus spike protein receptor-binding domain (From Homology) | H: Coronavirus spike protein receptor-binding domain | T: Beta-coronavirus spike protein receptor-binding domain | F: Spike_rec_bind | ECOD (1.6) |
G [auth E] | Corona_S2 | e8dziE3 | A: a+b complex topology | X: S2 subunit of coronavirus spike glycoprotein (From Topology) | H: S2 subunit of coronavirus spike glycoprotein (From Topology) | T: S2 subunit of coronavirus spike glycoprotein | F: Corona_S2 | ECOD (1.6) |
I [auth G] | V-set_8 | e8dziG1 | A: beta sandwiches | X: Immunoglobulin-like beta-sandwich | H: Immunoglobulin-related | T: Immunoglobulin/Fibronectin type III/E set domains/PapD-like | F: V-set_8 | ECOD (1.6) |
B [auth H] | V-set_8 | e8dziH1 | A: beta sandwiches | X: Immunoglobulin-like beta-sandwich | H: Immunoglobulin-related | T: Immunoglobulin/Fibronectin type III/E set domains/PapD-like | F: V-set_8 | ECOD (1.6) |
E [auth B] | V-set_8 | e8dziB1 | A: beta sandwiches | X: Immunoglobulin-like beta-sandwich | H: Immunoglobulin-related | T: Immunoglobulin/Fibronectin type III/E set domains/PapD-like | F: V-set_8 | ECOD (1.6) |
C [auth L] | V-set | e8dziL1 | A: beta sandwiches | X: Immunoglobulin-like beta-sandwich | H: Immunoglobulin-related | T: Immunoglobulin/Fibronectin type III/E set domains/PapD-like | F: V-set | ECOD (1.6) |
H [auth F] | V-set | e8dziF1 | A: beta sandwiches | X: Immunoglobulin-like beta-sandwich | H: Immunoglobulin-related | T: Immunoglobulin/Fibronectin type III/E set domains/PapD-like | F: V-set | ECOD (1.6) |
F [auth D] | V-set | e8dziD1 | A: beta sandwiches | X: Immunoglobulin-like beta-sandwich | H: Immunoglobulin-related | T: Immunoglobulin/Fibronectin type III/E set domains/PapD-like | F: V-set | ECOD (1.6) |
SAbDab Antibody Annotation SAbDab Database Homepage
Chain | Chain Class | Chain Subclass | Chain Type | Antigen Name(s) | Provenance Source |
---|---|---|---|---|---|
B [auth H], E [auth B], I [auth G] | Heavy Chain | IGHV5 | - | spike glycoprotein | SAbDab (2024-10-11) |
C [auth L], F [auth D], H [auth F] | Light Chain | IGKV3 | Kappa | spike glycoprotein | SAbDab (2024-10-11) |