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 8DFA | pdb_00008dfa

type I-C Cascade bound to ssDNA target


Domain Annotation: ECOD Classification ECOD Database Homepage

ChainsFamily NameDomain Identifier ArchitecturePossible HomologyHomologyTopologyFamilyProvenance Source (Version)
HCas_Cas7e8dfaH1 A: alpha arraysX: cradle loop barrelH: RIFT-relatedT: FMN-binding split barrelF: Cas_Cas7ECOD (v295.2)
GCas_Cas7e8dfaG1 A: alpha arraysX: cradle loop barrelH: RIFT-relatedT: FMN-binding split barrelF: Cas_Cas7ECOD (v295.2)
FCas_Cas7e8dfaF1 A: alpha arraysX: cradle loop barrelH: RIFT-relatedT: FMN-binding split barrelF: Cas_Cas7ECOD (v295.2)
ECas_Cas7e8dfaE1 A: alpha arraysX: cradle loop barrelH: RIFT-relatedT: FMN-binding split barrelF: Cas_Cas7ECOD (v295.2)
DCas_Cas7e8dfaD1 A: alpha arraysX: cradle loop barrelH: RIFT-relatedT: FMN-binding split barrelF: Cas_Cas7ECOD (v295.2)
CCas_Cas7e8dfaC1 A: alpha arraysX: cradle loop barrelH: RIFT-relatedT: FMN-binding split barrelF: Cas_Cas7ECOD (v295.2)
BCas_Cas7e8dfaB1 A: alpha arraysX: cradle loop barrelH: RIFT-relatedT: FMN-binding split barrelF: Cas_Cas7ECOD (v295.2)
ACas_Cas7e8dfaA1 A: alpha arraysX: cradle loop barrelH: RIFT-relatedT: FMN-binding split barrelF: Cas_Cas7ECOD (v295.2)

Protein Family Annotation Pfam Database Homepage

ChainsAccessionNameDescriptionCommentsSource
PF09709CRISPR-associated protein (Cas_Csd1), N-terminal domain (Cas_Csd1)CRISPR-associated protein (Cas_Csd1), N-terminal domainCRISPR loci appear to be mobile elements with a wide host range. This entry represents the N-terminal domain of Csd1 (CRISPR/Cas Subtype DVULG protein 1) proteins that tend to be found near CRISPR repeats of the DVULG subtype of CRISPR/Cas locus. The ...CRISPR loci appear to be mobile elements with a wide host range. This entry represents the N-terminal domain of Csd1 (CRISPR/Cas Subtype DVULG protein 1) proteins that tend to be found near CRISPR repeats of the DVULG subtype of CRISPR/Cas locus. The species range, so far, is exclusively bacterial and mesophilic, although CRISPR loci are particularly common among the archaea and thermophilic bacteria. Clusters of short DNA repeats with nonhomologous spacers, which are found at regular intervals in the genomes of phylogenetically distinct prokaryotic species, comprise a family with recognisable features. This family is known as CRISPR (short for Clustered, Regularly Interspaced Short Palindromic Repeats). A number of protein families appear only in association with these repeats and are designated Cas (CRISPR-Associated) proteins.
Domain
B, C, D, E, F
PF05107CRISPR-associated protein Cas7 (Cas_Cas7)CRISPR-associated protein Cas7- Family
PF09704CRISPR-associated protein (Cas_Cas5) (Cas_Cas5d)CRISPR-associated protein (Cas_Cas5)- Family

Gene Ontology: Gene Product Annotation Gene Ontology Database Homepage

ChainsPolymerMolecular FunctionBiological ProcessCellular Component
M [auth N]TS---
RNA (46-MER)---
J, K
CRISPR-associated protein, CT1133 family- - -
CRISPR-associated protein, CT1133 family- - -
B, C, D, E, F
CRISPR-associated protein, TM1801 family- -
pre-crRNA processing endonuclease -