8DF8
Structure of M. kandleri topoisomerase V in complex with DNA. 40 base pair symmetric DNA complex
Domain Annotation: SCOP2 Classification SCOP2 Database Homepage
Chains | Type | Family Name | Domain Identifier | Family Identifier | Provenance Source (Version) |
---|---|---|---|---|---|
A | SCOP2B Superfamily | Helix-hairpin-helix tandem | 8039249 | 3000163 | SCOP2B (2022-06-29) |
A | SCOP2B Superfamily | Helix-hairpin-helix tandem | 8039251 | 3000163 | SCOP2B (2022-06-29) |
A | SCOP2B Superfamily | Helix-hairpin-helix tandem | 8039248 | 3000163 | SCOP2B (2022-06-29) |
A | SCOP2B Superfamily | Helix-hairpin-helix tandem | 8039247 | 3000163 | SCOP2B (2022-06-29) |
A | SCOP2B Superfamily | Topoisomerase V catalytic domain-like | 8039252 | 3001992 | SCOP2B (2022-06-29) |
B | SCOP2B Superfamily | Helix-hairpin-helix tandem | 8039251 | 3000163 | SCOP2B (2022-06-29) |
B | SCOP2B Superfamily | Helix-hairpin-helix tandem | 8039249 | 3000163 | SCOP2B (2022-06-29) |
B | SCOP2B Superfamily | Helix-hairpin-helix tandem | 8039247 | 3000163 | SCOP2B (2022-06-29) |
B | SCOP2B Superfamily | Helix-hairpin-helix tandem | 8039248 | 3000163 | SCOP2B (2022-06-29) |
B | SCOP2B Superfamily | Topoisomerase V catalytic domain-like | 8039252 | 3001992 | SCOP2B (2022-06-29) |
Domain Annotation: ECOD Classification ECOD Database Homepage
Chains | Family Name | Domain Identifier | Architecture | Possible Homology | Homology | Topology | Family | Provenance Source (Version) |
---|---|---|---|---|---|---|---|---|
A | HTH_AsnC-type_2 | e8df8A3 | A: alpha arrays | X: HTH | H: HTH | T: tri-helical | F: HTH_AsnC-type_2 | ECOD (1.6) |
A | HHH_5 | e8df8A10 | A: alpha arrays | X: HhH/H2TH | H: SAM/DNA-glycosylase | T: SAM domain-like | F: HHH_5 | ECOD (1.6) |
A | HHH_2_1 | e8df8A7 | A: alpha arrays | X: HhH/H2TH | H: SAM/DNA-glycosylase | T: SAM domain-like | F: HHH_2_1 | ECOD (1.6) |
A | EUF07927 | e8df8A8 | A: alpha arrays | X: HhH/H2TH | H: SAM/DNA-glycosylase | T: SAM domain-like | F: EUF07927 | ECOD (1.6) |
A | EUF07924,EUF07925 | e8df8A2 | A: alpha arrays | X: HhH/H2TH | H: SAM/DNA-glycosylase | T: SAM domain-like | F: EUF07924,EUF07925 | ECOD (1.6) |
A | EUF08090 | e8df8A1 | A: alpha bundles | X: Topoisomerase V catalytic domain-like (From Topology) | H: Topoisomerase V catalytic domain-like (From Topology) | T: Topoisomerase V catalytic domain-like | F: EUF08090 | ECOD (1.6) |
B | HTH_AsnC-type_2 | e8df8B3 | A: alpha arrays | X: HTH | H: HTH | T: tri-helical | F: HTH_AsnC-type_2 | ECOD (1.6) |
B | HHH_5 | e8df8B10 | A: alpha arrays | X: HhH/H2TH | H: SAM/DNA-glycosylase | T: SAM domain-like | F: HHH_5 | ECOD (1.6) |
B | HHH_2_1 | e8df8B7 | A: alpha arrays | X: HhH/H2TH | H: SAM/DNA-glycosylase | T: SAM domain-like | F: HHH_2_1 | ECOD (1.6) |
B | EUF07927 | e8df8B8 | A: alpha arrays | X: HhH/H2TH | H: SAM/DNA-glycosylase | T: SAM domain-like | F: EUF07927 | ECOD (1.6) |
B | EUF07924,EUF07925 | e8df8B2 | A: alpha arrays | X: HhH/H2TH | H: SAM/DNA-glycosylase | T: SAM domain-like | F: EUF07924,EUF07925 | ECOD (1.6) |
B | EUF08090 | e8df8B1 | A: alpha bundles | X: Topoisomerase V catalytic domain-like (From Topology) | H: Topoisomerase V catalytic domain-like (From Topology) | T: Topoisomerase V catalytic domain-like | F: EUF08090 | ECOD (1.6) |
Protein Family Annotation Pfam Database Homepage
Chains | Accession | Name | Description | Comments | Source |
---|---|---|---|---|---|
PF21872 | SAM domain-like (SAM_5) | SAM domain-like | This entry corresponds to the most N-terminal SAM domain of several that is found topoisomerase V protein. | Domain | |
PF14520 | Helix-hairpin-helix domain (HHH_5) | Helix-hairpin-helix domain | - | Domain | |
PF22409 | Topoisomerase V, HHH domain (TopoV_HHH) | Topoisomerase V, HHH domain | This entry represents a helix-hairpin-helix (HHH) domain of topoisomerase V (Topo-V), the only member of a novel topoisomerase subtype. Topo-V is unique as it is a bifunctional enzyme carrying both topoisomerase and DNA repair lyase activities within ... | Domain | |
PF21616 | Topoisomerase V, second (HhH)2 tandem domain (Topo-V_HhH_2_2nd) | Topoisomerase V, second (HhH)2 tandem domain | This domain is found in Topoisomerase V from Methanopyrus kandleri (Topo-V), is a bifunctional enzyme carrying both topoisomerase and DNA repair lyase activities. Topo-V consists of an N-terminal topoisomerase domain followed by 12 tandem (HhH)2 doma ... | Domain | |
PF13412 | Winged helix-turn-helix DNA-binding (HTH_24) | Winged helix-turn-helix DNA-binding | - | Domain | |
Gene Ontology: Gene Product Annotation Gene Ontology Database Homepage
Chains | Polymer | Molecular Function | Biological Process | Cellular Component |
---|---|---|---|---|
Topoisomerase V |
| - | ||
C [auth U] | DNA (42-MER) | - | - | - |
D [auth V] | DNA (42-MER) | - | - | - |
InterPro: Protein Family Classification InterPro Database Homepage
Chains | Accession | Name | Type |
---|---|---|---|
IPR049334 | Topoisomerase V, second (HhH)2 tandem domain | Domain | |
IPR010994 | RuvA domain 2-like | Homologous Superfamily | |
IPR024065 | DNA topoisomerase V, catalytic domain superfamily | Homologous Superfamily | |
IPR036388 | Winged helix-like DNA-binding domain superfamily | Homologous Superfamily | |
IPR003583 | Helix-hairpin-helix DNA-binding motif, class 1 | Domain |