Annotations: 8DCK

Domain Annotation: ECOD Classification ECOD Database Homepage

Chains	Family Name	Domain Identifier	Architecture	Possible Homology	Homology	Topology	Family	Provenance Source (Version)
A	PF00664	e8dckA2	A: alpha bundles	X: Type II ABC exporter transmembrane domain fold	H: Type I ABC exporter transmembrane domain fold (From Topology)	T: Type I ABC exporter transmembrane domain fold	F: PF00664	ECOD (1.6)
A	PF03412	e8dckA1	A: a+b complex topology	X: Cysteine proteinases-like	H: Cysteine proteinases (From Topology)	T: Cysteine proteinases	F: PF03412	ECOD (1.6)
A	PF00005	e8dckA3	A: a/b three-layered sandwiches	X: P-loop domains-like	H: P-loop domains-related	T: P-loop containing nucleoside triphosphate hydrolases	F: PF00005	ECOD (1.6)
E [auth I]	PF00664	e8dckI3	A: alpha bundles	X: Type II ABC exporter transmembrane domain fold	H: Type I ABC exporter transmembrane domain fold (From Topology)	T: Type I ABC exporter transmembrane domain fold	F: PF00664	ECOD (1.6)
E [auth I]	PF03412	e8dckI2	A: a+b complex topology	X: Cysteine proteinases-like	H: Cysteine proteinases (From Topology)	T: Cysteine proteinases	F: PF03412	ECOD (1.6)
E [auth I]	PF00005	e8dckI1	A: a/b three-layered sandwiches	X: P-loop domains-like	H: P-loop domains-related	T: P-loop containing nucleoside triphosphate hydrolases	F: PF00005	ECOD (1.6)
F [auth J]	PF00664	e8dckJ1	A: alpha bundles	X: Type II ABC exporter transmembrane domain fold	H: Type I ABC exporter transmembrane domain fold (From Topology)	T: Type I ABC exporter transmembrane domain fold	F: PF00664	ECOD (1.6)
F [auth J]	PF00005	e8dckJ2	A: a/b three-layered sandwiches	X: P-loop domains-like	H: P-loop domains-related	T: P-loop containing nucleoside triphosphate hydrolases	F: PF00005	ECOD (1.6)
I [auth E]	PF00664	e8dckE3	A: alpha bundles	X: Type II ABC exporter transmembrane domain fold	H: Type I ABC exporter transmembrane domain fold (From Topology)	T: Type I ABC exporter transmembrane domain fold	F: PF00664	ECOD (1.6)
I [auth E]	PF03412	e8dckE2	A: a+b complex topology	X: Cysteine proteinases-like	H: Cysteine proteinases (From Topology)	T: Cysteine proteinases	F: PF03412	ECOD (1.6)
I [auth E]	PF00005	e8dckE1	A: a/b three-layered sandwiches	X: P-loop domains-like	H: P-loop domains-related	T: P-loop containing nucleoside triphosphate hydrolases	F: PF00005	ECOD (1.6)
J [auth F]	PF00664	e8dckF1	A: alpha bundles	X: Type II ABC exporter transmembrane domain fold	H: Type I ABC exporter transmembrane domain fold (From Topology)	T: Type I ABC exporter transmembrane domain fold	F: PF00664	ECOD (1.6)
J [auth F]	PF00005	e8dckF2	A: a/b three-layered sandwiches	X: P-loop domains-like	H: P-loop domains-related	T: P-loop containing nucleoside triphosphate hydrolases	F: PF00005	ECOD (1.6)
B	PF00664	e8dckB1	A: alpha bundles	X: Type II ABC exporter transmembrane domain fold	H: Type I ABC exporter transmembrane domain fold (From Topology)	T: Type I ABC exporter transmembrane domain fold	F: PF00664	ECOD (1.6)
B	PF00005	e8dckB2	A: a/b three-layered sandwiches	X: P-loop domains-like	H: P-loop domains-related	T: P-loop containing nucleoside triphosphate hydrolases	F: PF00005	ECOD (1.6)

Protein Family Annotation Pfam Database Homepage

Chains	Accession	Name	Description	Comments	Source
A, B, E [auth I], F [auth J], I [auth E], A, B, E [auth I], F [auth J], I [auth E], J [auth F]	PF03412	Peptidase C39 family (Peptidase_C39)	Peptidase C39 family	-	Family
A, B, E [auth I], F [auth J], I [auth E], A, B, E [auth I], F [auth J], I [auth E], J [auth F]	PF00664	ABC transporter transmembrane region (ABC_membrane)	ABC transporter transmembrane region	-	Family
A, B, E [auth I], F [auth J], I [auth E], A, B, E [auth I], F [auth J], I [auth E], J [auth F]	PF00005	ABC transporter (ABC_tran)	ABC transporter	ABC transporters for a large family of proteins responsible for translocation of a variety of compounds across biological membranes. ABC transporters are the largest family of proteins in many completely sequenced bacteria. ABC transporters are comp ...	ABC transporters for a large family of proteins responsible for translocation of a variety of compounds across biological membranes. ABC transporters are the largest family of proteins in many completely sequenced bacteria. ABC transporters are composed of two copies of this domain and two copies of a transmembrane domain Pfam:PF00664. These four domains may belong to a single polypeptide as in Swiss:P13569, or belong in different polypeptide chains.	Domain

Gene Ontology: Gene Product Annotation Gene Ontology Database Homepage

Chains	Polymer	Molecular Function	Biological Process	Cellular Component
A, B, E [auth I], F [auth J], I [auth E], A, B, E [auth I], F [auth J], I [auth E], J [auth F]	Alpha-hemolysin translocation ATP-binding protein HlyB	binding adenyl ribonucleotide binding nucleotide binding purine ribonucleotide binding purine ribonucleoside triphosphate binding nucleoside phosphate binding ion binding purine nucleotide binding organic cyclic compound binding anion binding adenyl nucleotide binding ATP binding heterocyclic compound binding carbohydrate derivative binding binding adenyl ribonucleotide binding nucleotide binding purine ribonucleotide binding purine ribonucleoside triphosphate binding nucleoside phosphate binding ion binding purine nucleotide binding organic cyclic compound binding anion binding adenyl nucleotide binding ATP binding heterocyclic compound binding carbohydrate derivative binding ribonucleotide binding small molecule binding peptidase activity catalytic activity, acting on a protein hydrolase activity catalytic activity ABC-type transporter activity active transmembrane transporter activity primary active transmembrane transporter activity ATPase-coupled transmembrane transporter activity transporter activity transmembrane transporter activity ATP-dependent activity pyrophosphatase activity ATP hydrolysis activity ribonucleoside triphosphate phosphatase activity hydrolase activity, acting on acid anhydrides, in phosphorus-containing anhydrides hydrolase activity, acting on acid anhydrides	protein localization establishment of protein localization cellular localization nitrogen compound transport transport secretion organic substance transport protein secretion by the type I secretion system establishment of protein localization to extracellular region export from cell protein secretion establishment of localization protein localization to extracellular region transmembrane transport localization protein localization establishment of protein localization cellular localization nitrogen compound transport transport secretion organic substance transport protein secretion by the type I secretion system establishment of protein localization to extracellular region export from cell protein secretion establishment of localization protein localization to extracellular region transmembrane transport localization secretion by cell protein transmembrane transport protein transport cellular macromolecule localization macromolecule localization cellular process organic substance metabolic process organonitrogen compound metabolic process proteolysis metabolic process primary metabolic process protein metabolic process macromolecule metabolic process	cell periphery plasma membrane membrane cellular anatomical entity protein-containing complex type I protein secretion system complex
C, D, G [auth K], H [auth L], K [auth G], C, D, G [auth K], H [auth L], K [auth G], L [auth H]	Membrane fusion protein (MFP) family protein	-	protein localization establishment of protein localization cellular localization nitrogen compound transport transport secretion organic substance transport establishment of protein localization to extracellular region export from cell protein secretion establishment of localization protein localization to extracellular region localization secretion by cell protein transport protein localization establishment of protein localization cellular localization nitrogen compound transport transport secretion organic substance transport establishment of protein localization to extracellular region export from cell protein secretion establishment of localization protein localization to extracellular region localization secretion by cell protein transport cellular macromolecule localization macromolecule localization cellular process	cell periphery plasma membrane membrane cellular anatomical entity

InterPro: Protein Family Classification InterPro Database Homepage

Chains	Accession	Name	Type
A, B, E [auth I], F [auth J], I [auth E], A, B, E [auth I], F [auth J], I [auth E], J [auth F]	IPR017871	ABC transporter-like, conserved site	Conserved Site
A, B, E [auth I], F [auth J], I [auth E], A, B, E [auth I], F [auth J], I [auth E], J [auth F]	IPR010132	ATPase, type I secretion system, HlyB	Family
A, B, E [auth I], F [auth J], I [auth E], A, B, E [auth I], F [auth J], I [auth E], J [auth F]	IPR005074	Peptidase C39, bacteriocin processing	Domain
A, B, E [auth I], F [auth J], I [auth E], A, B, E [auth I], F [auth J], I [auth E], J [auth F]	IPR003439	ABC transporter-like, ATP-binding domain	Domain
A, B, E [auth I], F [auth J], I [auth E], A, B, E [auth I], F [auth J], I [auth E], J [auth F]	IPR036640	ABC transporter type 1, transmembrane domain superfamily	Homologous Superfamily
A, B, E [auth I], F [auth J], I [auth E], A, B, E [auth I], F [auth J], I [auth E], J [auth F]	IPR039395	Peptidase C39-like A	Domain
A, B, E [auth I], F [auth J], I [auth E], A, B, E [auth I], F [auth J], I [auth E], J [auth F]	IPR003593	AAA+ ATPase domain	Domain
A, B, E [auth I], F [auth J], I [auth E], A, B, E [auth I], F [auth J], I [auth E], J [auth F]	IPR011527	ABC transporter type 1, transmembrane domain	Domain
A, B, E [auth I], F [auth J], I [auth E], A, B, E [auth I], F [auth J], I [auth E], J [auth F]	IPR039421	Type 1 protein exporter	Family
A, B, E [auth I], F [auth J], I [auth E], A, B, E [auth I], F [auth J], I [auth E], J [auth F]	IPR027417	P-loop containing nucleoside triphosphate hydrolase	Homologous Superfamily
C, D, G [auth K], H [auth L], K [auth G], C, D, G [auth K], H [auth L], K [auth G], L [auth H]	IPR010129	Type I secretion membrane fusion protein, HlyD family	Family
C, D, G [auth K], H [auth L], K [auth G], C, D, G [auth K], H [auth L], K [auth G], L [auth H]	IPR006144	Secretion protein HlyD, conserved site	Conserved Site

Membrane Protein Annotation: OPM OPM Database Homepage

Chains	External Link	Type	Class	Superfamily	Family
A, B, C, D, E [auth I] A, B, C, D, E [auth I], F [auth J], G [auth K], H [auth L], I [auth E], J [auth F], K [auth G], L [auth H]	OPM	Transmembrane	Alpha-helical polytopic	ABC transporters	Protein-1 exporter family

Membrane Protein Annotation: PDBTM PDBTM Database Homepage

Chains	External Link	Comment
A, B, C, D, E [auth I] A, B, C, D, E [auth I], F [auth J], G [auth K], H [auth L], I [auth E], J [auth F], K [auth G], L [auth H]	PDBTM	Annotated as membrane protein by PDBTM

Membrane Protein Annotation: mpstruc mpstruc Database Homepage

Chains	Resource Link	Group	Subgroup	Protein
A, B, C, D, E [auth I] A, B, C, D, E [auth I], F [auth J], G [auth K], H [auth L], I [auth E], J [auth F], K [auth G], L [auth H]	mpstruc	TRANSMEMBRANE PROTEINS: ALPHA-HELICAL	ATP Binding Cassette (ABC) Transporters	hemolysin A secretion system HlyB/D complex

RCSB PDB Core Operations are funded by the U.S. National Science Foundation (DBI-2321666), the US Department of Energy (DE-SC0019749), and the National Cancer Institute, National Institute of Allergy and Infectious Diseases, and National Institute of General Medical Sciences of the National Institutes of Health under grant R01GM133198.