8DCA
RNA ligase RtcB from Pyrococcus horikoshii in complex with Co2+ and GTP
Domain Annotation: ECOD Classification ECOD Database Homepage
Chains | Family Name | Domain Identifier | Architecture | Possible Homology | Homology | Topology | Family | Provenance Source (Version) |
---|---|---|---|---|---|---|---|---|
A | RtcB | e8dcaA1 | A: a+b two layers | X: Alpha-beta plaits | H: Hypothetical protein PH1602 (From Topology) | T: Hypothetical protein PH1602 | F: RtcB | ECOD (1.6) |
B | RtcB | e8dcaB1 | A: a+b two layers | X: Alpha-beta plaits | H: Hypothetical protein PH1602 (From Topology) | T: Hypothetical protein PH1602 | F: RtcB | ECOD (1.6) |
Protein Family Annotation Pfam Database Homepage
Chains | Accession | Name | Description | Comments | Source |
---|---|---|---|---|---|
PF01139 | tRNA-splicing ligase RtcB (RtcB) | tRNA-splicing ligase RtcB | - | Family |
Gene Ontology: Gene Product Annotation Gene Ontology Database Homepage
InterPro: Protein Family Classification InterPro Database Homepage
Chains | Accession | Name | Type |
---|---|---|---|
IPR036844 | Hint domain superfamily | Homologous Superfamily | |
IPR036025 | tRNA-splicing ligase RtcB-like superfamily | Homologous Superfamily | |
IPR030934 | Intein C-terminal splicing region | Conserved Site | |
IPR006142 | Intein | Domain | |
IPR004042 | Intein DOD homing endonuclease, central region | Domain | |
IPR027434 | Homing endonuclease | Homologous Superfamily | |
IPR006141 | Intein N-terminal splicing region | PTM | |
IPR004860 | Homing endonuclease, LAGLIDADG domain | Domain | |
IPR003587 | Hint domain N-terminal | Domain | |
IPR001233 | RNA-splicing ligase, RtcB | Family | |
IPR003586 | Hint domain C-terminal | Domain |