Annotations: 8DAQ

CryoEM structure of Western equine encephalitis virus VLP

External Resource: Annotation

Domain Annotation: ECOD Classification
Gene Ontology: Gene Product Annotation
InterPro: Protein Family Classification
Membrane Protein Annotation: PDBTM
Membrane Protein Annotation: MemProtMD

Domain Annotation: ECOD Classification ECOD Database Homepage

Chains	Family Name	Domain Identifier	Architecture	Possible Homology	Homology	Topology	Family	Provenance Source (Version)
D	Ferritin	e8daqD1	A: alpha arrays	X: Hypothetical protein YqbG-like	H: Hypothetical protein YqbG-like	T: alpha/beta-Hydrolases	F: Ferritin	ECOD (v295.2)
H	Ferritin	e8daqH1	A: alpha arrays	X: Hypothetical protein YqbG-like	H: Hypothetical protein YqbG-like	T: alpha/beta-Hydrolases	F: Ferritin	ECOD (v295.2)
F	Ferritin	e8daqF1	A: alpha arrays	X: Hypothetical protein YqbG-like	H: Hypothetical protein YqbG-like	T: alpha/beta-Hydrolases	F: Ferritin	ECOD (v295.2)
B	TRPM2	e8daqB01	A: alpha arrays	X: Rossmann-like	H: Rossmann-related	T: FAD/NAD(P)-binding domain	F: TRPM2	ECOD (v295.2)
C	Ferritin	e8daqC1	A: alpha arrays	X: Hypothetical protein YqbG-like	H: Hypothetical protein YqbG-like	T: alpha/beta-Hydrolases	F: Ferritin	ECOD (v295.2)
E	Ferritin	e8daqE1	A: alpha arrays	X: Hypothetical protein YqbG-like	H: Hypothetical protein YqbG-like	T: alpha/beta-Hydrolases	F: Ferritin	ECOD (v295.2)
G	Ferritin	e8daqG1	A: alpha arrays	X: Hypothetical protein YqbG-like	H: Hypothetical protein YqbG-like	T: alpha/beta-Hydrolases	F: Ferritin	ECOD (v295.2)
A	TRPM2	e8daqA01	A: alpha arrays	X: Rossmann-like	H: Rossmann-related	T: FAD/NAD(P)-binding domain	F: TRPM2	ECOD (v295.2)

Gene Ontology: Gene Product Annotation Gene Ontology Database Homepage

Chains	Polymer	Molecular Function	Biological Process	Cellular Component
B, D, F, H	E2 envelope glycoprotein	peptidase activity catalytic activity, acting on a protein serine hydrolase activity serine-type peptidase activity hydrolase activity serine-type endopeptidase activity catalytic activity endopeptidase activity structural molecule activity	viral process fusion of virus membrane with host endosome membrane membrane fusion involved in viral entry into host cell virion attachment to host cell biological process involved in interspecies interaction between organisms adhesion of symbiont to host cell viral life cycle adhesion of symbiont to host biological process involved in interaction with host biological process involved in symbiotic interaction symbiont entry into host cell symbiont entry into host proteolysis metabolic process viral process fusion of virus membrane with host endosome membrane membrane fusion involved in viral entry into host cell virion attachment to host cell biological process involved in interspecies interaction between organisms adhesion of symbiont to host cell viral life cycle adhesion of symbiont to host biological process involved in interaction with host biological process involved in symbiotic interaction symbiont entry into host cell symbiont entry into host proteolysis metabolic process cellular process primary metabolic process protein metabolic process macromolecule metabolic process	virion component virion membrane viral capsid icosahedral viral capsid T=4 icosahedral viral capsid host intracellular membrane-bounded organelle host cellular component host intracellular part cellular anatomical structure host cell part host intracellular region host cell nucleus other organism part host intracellular organelle virion component virion membrane viral capsid icosahedral viral capsid T=4 icosahedral viral capsid host intracellular membrane-bounded organelle host cellular component host intracellular part cellular anatomical structure host cell part host intracellular region host cell nucleus other organism part host intracellular organelle host cell plasma membrane host cell membrane host cell cytoplasm
A, C, E, G	E1 envelope glycoprotein	peptidase activity catalytic activity, acting on a protein serine hydrolase activity serine-type peptidase activity hydrolase activity serine-type endopeptidase activity catalytic activity endopeptidase activity structural molecule activity	viral process fusion of virus membrane with host endosome membrane membrane fusion involved in viral entry into host cell virion attachment to host cell biological process involved in interspecies interaction between organisms adhesion of symbiont to host cell viral life cycle adhesion of symbiont to host biological process involved in interaction with host biological process involved in symbiotic interaction symbiont entry into host cell symbiont entry into host proteolysis metabolic process viral process fusion of virus membrane with host endosome membrane membrane fusion involved in viral entry into host cell virion attachment to host cell biological process involved in interspecies interaction between organisms adhesion of symbiont to host cell viral life cycle adhesion of symbiont to host biological process involved in interaction with host biological process involved in symbiotic interaction symbiont entry into host cell symbiont entry into host proteolysis metabolic process cellular process primary metabolic process protein metabolic process macromolecule metabolic process	virion component virion membrane viral capsid icosahedral viral capsid T=4 icosahedral viral capsid host intracellular membrane-bounded organelle host cellular component host intracellular part cellular anatomical structure host cell part host intracellular region host cell nucleus other organism part host intracellular organelle virion component virion membrane viral capsid icosahedral viral capsid T=4 icosahedral viral capsid host intracellular membrane-bounded organelle host cellular component host intracellular part cellular anatomical structure host cell part host intracellular region host cell nucleus other organism part host intracellular organelle host cell plasma membrane host cell membrane host cell cytoplasm

InterPro: Protein Family Classification InterPro Database Homepage

Chains	Accession	Name	Type
B, D, F, H	IPR002533	Alphavirus E3 spike glycoprotein	Domain
B, D, F, H	IPR009003	Peptidase S1, PA clan	Homologous Superfamily
B, D, F, H	IPR042305	Alphavirus E2 glycoprotein, domain B	Homologous Superfamily
B, D, F, H	IPR042306	Alphavirus E2 glycoprotein, domain C	Homologous Superfamily
B, D, F, H	IPR000936	Alphavirus E2 glycoprotein	Family
B, D, F, H	IPR038055	Flaviviral glycoprotein E, dimerisation domain	Homologous Superfamily
B, D, F, H	IPR000930	Peptidase S3, togavirin	Domain
B, D, F, H	IPR014756	Immunoglobulin E-set	Homologous Superfamily
B, D, F, H	IPR042304	Alphavirus E2 glycoprotein, domain A	Homologous Superfamily
B, D, F, H	IPR002548	Alphavirus E1 glycoprotein	Domain
B, D, F, H	IPR000336	Flavivirus/Alphavirus glycoprotein, immunoglobulin-like domain superfamily	Homologous Superfamily
B, D, F, H	IPR036253	Flavivirus glycoprotein, central and dimerisation domain superfamily	Homologous Superfamily
A, C, E, G	IPR002533	Alphavirus E3 spike glycoprotein	Domain
A, C, E, G	IPR009003	Peptidase S1, PA clan	Homologous Superfamily
A, C, E, G	IPR042305	Alphavirus E2 glycoprotein, domain B	Homologous Superfamily
A, C, E, G	IPR042306	Alphavirus E2 glycoprotein, domain C	Homologous Superfamily
A, C, E, G	IPR000936	Alphavirus E2 glycoprotein	Family
A, C, E, G	IPR038055	Flaviviral glycoprotein E, dimerisation domain	Homologous Superfamily
A, C, E, G	IPR000930	Peptidase S3, togavirin	Domain
A, C, E, G	IPR014756	Immunoglobulin E-set	Homologous Superfamily
A, C, E, G	IPR042304	Alphavirus E2 glycoprotein, domain A	Homologous Superfamily
A, C, E, G	IPR002548	Alphavirus E1 glycoprotein	Domain
A, C, E, G	IPR000336	Flavivirus/Alphavirus glycoprotein, immunoglobulin-like domain superfamily	Homologous Superfamily
A, C, E, G	IPR036253	Flavivirus glycoprotein, central and dimerisation domain superfamily	Homologous Superfamily