8CX2
Cryo-EM structure of human APOBEC3G/HIV-1 Vif/CBFbeta/ELOB/ELOC dimeric complex in State 2
Domain Annotation: SCOP2 Classification SCOP2 Database Homepage
Chains | Type | Family Name | Domain Identifier | Family Identifier | Provenance Source (Version) |
---|---|---|---|---|---|
A | SCOP2B Superfamily | Cytidine deaminase-like | 8105521 | 3001838 | SCOP2B (2022-06-29) |
F | SCOP2B Superfamily | Cytidine deaminase-like | 8105521 | 3001838 | SCOP2B (2022-06-29) |
C | SCOP2B Superfamily | Core binding factor beta, CBF | 8042548 | 3001169 | SCOP2B (2022-06-29) |
H | SCOP2B Superfamily | Core binding factor beta, CBF | 8042548 | 3001169 | SCOP2B (2022-06-29) |
D | SCOP2B Superfamily | Ubiquitin-like | 8038575 | 3000157 | SCOP2B (2022-06-29) |
I | SCOP2B Superfamily | Ubiquitin-like | 8038575 | 3000157 | SCOP2B (2022-06-29) |
Domain Annotation: ECOD Classification ECOD Database Homepage
Chains | Family Name | Domain Identifier | Architecture | Possible Homology | Homology | Topology | Family | Provenance Source (Version) |
---|---|---|---|---|---|---|---|---|
A | APOBEC_N | e8cx2A1 | A: a+b three layers | X: Cytidine deaminase-like (From Topology) | H: Cytidine deaminase-like (From Topology) | T: Cytidine deaminase-like | F: APOBEC_N | ECOD (1.6) |
F | APOBEC_N | e8cx2F1 | A: a+b three layers | X: Cytidine deaminase-like (From Topology) | H: Cytidine deaminase-like (From Topology) | T: Cytidine deaminase-like | F: APOBEC_N | ECOD (1.6) |
B | Vif | e8cx2B1 | A: a+b two layers | X: Virion infectivity factor Vif (From Topology) | H: Virion infectivity factor Vif (From Topology) | T: Virion infectivity factor Vif | F: Vif | ECOD (1.6) |
G | Vif | e8cx2G1 | A: a+b two layers | X: Virion infectivity factor Vif (From Topology) | H: Virion infectivity factor Vif (From Topology) | T: Virion infectivity factor Vif | F: Vif | ECOD (1.6) |
C | CBF_beta | e8cx2C1 | A: beta barrels | X: CBF-like | H: Core binding factor beta, CBF (From Topology) | T: Core binding factor beta, CBF | F: CBF_beta | ECOD (1.6) |
H | CBF_beta | e8cx2H1 | A: beta barrels | X: CBF-like | H: Core binding factor beta, CBF (From Topology) | T: Core binding factor beta, CBF | F: CBF_beta | ECOD (1.6) |
D | ubiquitin_2 | e8cx2D1 | A: a+b two layers | X: beta-Grasp | H: Ubiquitin-related | T: Ubiquitin-like | F: ubiquitin_2 | ECOD (1.6) |
I | ubiquitin_2 | e8cx2I1 | A: a+b two layers | X: beta-Grasp | H: Ubiquitin-related | T: Ubiquitin-like | F: ubiquitin_2 | ECOD (1.6) |
J | Skp1_POZ_1 | e8cx2J1 | A: a+b two layers | X: POZ domain (From Topology) | H: POZ domain (From Topology) | T: POZ domain | F: Skp1_POZ_1 | ECOD (1.6) |
E | Skp1_POZ_1 | e8cx2E1 | A: a+b two layers | X: POZ domain (From Topology) | H: POZ domain (From Topology) | T: POZ domain | F: Skp1_POZ_1 | ECOD (1.6) |
Protein Family Annotation Pfam Database Homepage
Chains | Accession | Name | Description | Comments | Source |
---|---|---|---|---|---|
PF05240 | APOBEC-like C-terminal domain (APOBEC_C) | APOBEC-like C-terminal domain | This domain is found at the C-termini of the Apolipoprotein B mRNA editing enzyme. | Domain | |
PF18782 | Novel AID APOBEC clade 2 (NAD2) | Novel AID APOBEC clade 2 | - | Family | |
PF00559 | Retroviral Vif (Viral infectivity) protein (Vif) | Retroviral Vif (Viral infectivity) protein | - | Family | |
PF00240 | Ubiquitin family (ubiquitin) | Ubiquitin family | This family contains a number of ubiquitin-like proteins: SUMO (smt3 homologue) (see Swiss:Q02724), Nedd8 (see Swiss:P29595), Elongin B (see Swiss:Q15370), Rub1 (see Swiss:Q9SHE7), and Parkin (see Swiss:O60260). A number of them are thought to carry ... | Domain | |
PF03931 | Skp1 family, tetramerisation domain (Skp1_POZ) | Skp1 family, tetramerisation domain | - | Domain | |
Gene Ontology: Gene Product Annotation Gene Ontology Database Homepage
InterPro: Protein Family Classification InterPro Database Homepage
Chains | Accession | Name | Type |
---|---|---|---|
IPR050610 | APOBEC Cytidine Deaminase | Family | |
IPR016193 | Cytidine deaminase-like | Homologous Superfamily | |
IPR002125 | Cytidine and deoxycytidylate deaminase domain | Domain | |
IPR016192 | APOBEC/CMP deaminase, zinc-binding | Binding Site | |
IPR000475 | Retroviral Vif (Viral infectivity) protein | Family | |
IPR003417 | Core-binding factor, beta subunit | Family | |
IPR036552 | Core-binding factor, beta subunit superfamily | Homologous Superfamily | |
IPR000626 | Ubiquitin-like domain | Domain | |
IPR039049 | Elongin B | Family | |
IPR029071 | Ubiquitin-like domain superfamily | Homologous Superfamily | |
IPR016073 | SKP1 component, POZ domain | Domain | |
IPR001232 | S-phase kinase-associated protein 1-like | Family | |
IPR039948 | Elongin-C | Family | |
IPR011333 | SKP1/BTB/POZ domain superfamily | Homologous Superfamily |