8CWO

Cutibacterium acnes 30S ribosomal subunit with Sarecycline bound, body domain only in the local refined map


Domain Annotation: ECOD Classification ECOD Database Homepage

ChainsFamily NameDomain Identifier ArchitecturePossible HomologyHomologyTopologyFamilyProvenance Source (Version)
J [auth R]PF01084e8cwoR1 A: alpha arraysX: HTHH: HTHT: tri-helicalF: PF01084ECOD (1.6)
K [auth T]PF01649e8cwoT1 A: alpha bundlesX: Spectrin repeat-likeH: Ribosomal protein S20 (From Topology)T: Ribosomal protein S20F: PF01649ECOD (1.6)
L [auth P]PF00886e8cwoP1 A: a+b two layersX: Ribosomal protein S16 (From Topology)H: Ribosomal protein S16 (From Topology)T: Ribosomal protein S16F: PF00886ECOD (1.6)
N [auth B]PF00318e8cwoB1 A: a/b three-layered sandwichesX: Flavodoxin-likeH: Ribosomal protein S2/SIS domain (From Topology)T: Ribosomal protein S2/SIS domainF: PF00318ECOD (1.6)
B [auth D]PF00163,PF01479e8cwoD1 A: a+b two layersX: beta-GraspH: Ubiquitin-relatedT: Alpha-L RNA-binding motifF: PF00163,PF01479ECOD (1.6)
C [auth E]PF03719e8cwoE1 A: a+b two layersX: Ribosomal protein S5 domain 2-like (From Topology)H: Ribosomal protein S5 domain 2-like (From Topology)T: Ribosomal protein S5 domain 2-likeF: PF03719ECOD (1.6)
D [auth F]PF01250e8cwoF1 A: a+b two layersX: Alpha-beta plaitsH: Ribosomal protein S6 (From Topology)T: Ribosomal protein S6F: PF01250ECOD (1.6)
E [auth H]PF00410e8cwoH1 A: a+b two layersX: R3H domain-likeH: Ribosomal protein S8, N-terminal domain (From Topology)T: Ribosomal protein S8, N-terminal domainF: PF00410ECOD (1.6)
E [auth H]PF00410e8cwoH2 A: a+b two layersX: Ribosomal protein S8, C-terminal domain (From Topology)H: Ribosomal protein S8, C-terminal domain (From Topology)T: Ribosomal protein S8, C-terminal domainF: PF00410ECOD (1.6)
F [auth K]PF00411e8cwoK1 A: mixed a+b and a/bX: Ribonuclease H-likeH: Ribonuclease H-like (From Topology)T: Ribonuclease H-likeF: PF00411ECOD (1.6)
G [auth L]PF00164e8cwoL1 A: beta barrelsX: OB-foldH: Nucleic acid-binding proteins (From Topology)T: Nucleic acid-binding proteinsF: PF00164ECOD (1.6)
H [auth O]PF00312e8cwoO1 A: alpha arraysX: S15/NS1 RNA-binding domain (From Topology)H: S15/NS1 RNA-binding domain (From Topology)T: S15/NS1 RNA-binding domainF: PF00312ECOD (1.6)
I [auth Q]PF00366e8cwoQ1 A: beta barrelsX: OB-foldH: Nucleic acid-binding proteins (From Topology)T: Nucleic acid-binding proteinsF: PF00366ECOD (1.6)

Protein Family Annotation Pfam Database Homepage

ChainsAccessionNameDescriptionCommentsSource
J [auth R]PF01084Ribosomal protein S18 (Ribosomal_S18)Ribosomal protein S18- Family
K [auth T]PF01649Ribosomal protein S20 (Ribosomal_S20p)Ribosomal protein S20- Family
L [auth P]PF00886Ribosomal protein S16 (Ribosomal_S16)Ribosomal protein S16- Family
M [auth X]PF08213Mitochondrial mRNA-processing protein COX24, C-terminal (COX24_C)Mitochondrial mRNA-processing protein COX24, C-terminalThis domain of unknown function is found at the C terminal end of Mitochondrial small ribosomal subunit protein mS38, also known as Mitochondrial mRNA-processing protein COX24 in yeast which is involved in the splicing of the COX1 mRNA [1]. COX24 is ...This domain of unknown function is found at the C terminal end of Mitochondrial small ribosomal subunit protein mS38, also known as Mitochondrial mRNA-processing protein COX24 in yeast which is involved in the splicing of the COX1 mRNA [1]. COX24 is a component of the mitochondrial ribosome (mitoribosome), responsible for the synthesis of mitochondrial genome-encoded proteins, including at least some of the essential transmembrane subunits of the mitochondrial respiratory chain. The mitoribosomes are attached to the mitochondrial inner membrane and translation products are cotranslationally integrated into the membrane [2,3]. This domain is also found in COX24 mammalian homologue Aurora kinase A-interacting protein [4]. This entry also includes uncharacterised proteins from bacteria.
Domain
N [auth B]PF00318Ribosomal protein S2 (Ribosomal_S2)Ribosomal protein S2- Family
B [auth D]PF00163Ribosomal protein S4/S9 N-terminal domain (Ribosomal_S4)Ribosomal protein S4/S9 N-terminal domain- Family
B [auth D]PF01479S4 domain (S4)S4 domainThe S4 domain is a small domain consisting of 60-65 amino acid residues that was detected in the bacterial ribosomal protein S4, eukaryotic ribosomal S9, two families of pseudouridine synthases, a novel family of predicted RNA methylases, a yeast pro ...The S4 domain is a small domain consisting of 60-65 amino acid residues that was detected in the bacterial ribosomal protein S4, eukaryotic ribosomal S9, two families of pseudouridine synthases, a novel family of predicted RNA methylases, a yeast protein containing a pseudouridine synthetase and a deaminase domain, bacterial tyrosyl-tRNA synthetases, and a number of uncharacterized, small proteins that may be involved in translation regulation [1]. The S4 domain probably mediates binding to RNA.
Domain
C [auth E]PF03719Ribosomal protein S5, C-terminal domain (Ribosomal_S5_C)Ribosomal protein S5, C-terminal domain- Domain
C [auth E]PF00333Ribosomal protein S5, N-terminal domain (Ribosomal_S5)Ribosomal protein S5, N-terminal domain- Domain
D [auth F]PF01250Ribosomal protein S6 (Ribosomal_S6)Ribosomal protein S6- Domain
E [auth H]PF00410Ribosomal protein S8 (Ribosomal_S8)Ribosomal protein S8- Domain
F [auth K]PF00411Ribosomal protein S11 (Ribosomal_S11)Ribosomal protein S11- Family
G [auth L]PF00164Ribosomal protein S12/S23 (Ribosom_S12_S23)Ribosomal protein S12/S23- Family
H [auth O]PF00312Ribosomal protein S15 (Ribosomal_S15)Ribosomal protein S15- Domain
I [auth Q]PF00366Ribosomal protein S17 (Ribosomal_S17)Ribosomal protein S17- Domain

Gene Ontology: Gene Product Annotation Gene Ontology Database Homepage

ChainsPolymerMolecular FunctionBiological ProcessCellular Component
16S ribosomal RNA---
J [auth R]30S ribosomal protein S18
K [auth T]30S ribosomal protein S20
L [auth P]30S ribosomal protein S16
M [auth X]30S ribosomal protein bS22---
N [auth B]30S ribosomal protein S2
O [auth Y]mRNA---
B [auth D]30S ribosomal protein S4
C [auth E]30S ribosomal protein S5
D [auth F]30S ribosomal protein S6
E [auth H]30S ribosomal protein S8
F [auth K]30S ribosomal protein S11
G [auth L]30S ribosomal protein S12
H [auth O]30S ribosomal protein S15
I [auth Q]30S ribosomal protein S17

InterPro: Protein Family Classification InterPro Database Homepage

ChainsAccessionNameType
J [auth R]IPR001648Small ribosomal subunit protein bS18Family
J [auth R]IPR018275Small ribosomal subunit protein bS18, conserved siteConserved Site
J [auth R]IPR036870Small ribosomal subunit protein bS18 superfamilyHomologous Superfamily
K [auth T]IPR036510Small ribosomal subunit protein bS20 superfamilyHomologous Superfamily
K [auth T]IPR002583Small ribosomal subunit protein bS20Family
L [auth P]IPR023803Small ribosomal subunit protein bS16 domain superfamilyHomologous Superfamily
L [auth P]IPR000307Small ribosomal subunit protein bS16Family
L [auth P]IPR020592Small ribosomal subunit protein bS16, conserved siteConserved Site
N [auth B]IPR005706Small ribosomal subunit protein uS2, bacteria/mitochondria/plastidFamily
N [auth B]IPR023591Small ribosomal subunit protein uS2, flavodoxin-like domain superfamilyHomologous Superfamily
N [auth B]IPR001865Small ribosomal subunit protein uS2Family
B [auth D]IPR018079Small ribosomal subunit protein uS4, conserved siteConserved Site
B [auth D]IPR002942RNA-binding S4 domainDomain
B [auth D]IPR001912Small ribosomal subunit protein uS4, N-terminalDomain
B [auth D]IPR036986RNA-binding S4 domain superfamilyHomologous Superfamily
B [auth D]IPR005709Small ribosomal subunit protein uS4, bacterial-typeFamily
B [auth D]IPR022801Small ribosomal subunit protein uS4Family
C [auth E]IPR000851Small ribosomal subunit protein uS5Family
C [auth E]IPR005324Small ribosomal subunit protein uS5, C-terminalDomain
C [auth E]IPR013810Small ribosomal subunit protein uS5, N-terminalDomain
C [auth E]IPR020568Ribosomal protein uS5 domain 2-type superfamilyHomologous Superfamily
C [auth E]IPR018192Small ribosomal subunit protein uS5, N-terminal, conserved siteConserved Site
C [auth E]IPR005712Small ribosomal subunit protein uS5, bacterial-typeFamily
C [auth E]IPR014721Small ribosomal subunit protein uS5 domain 2-type fold, subgroupHomologous Superfamily
D [auth F]IPR000529Small ribosomal subunit protein bS6Family
D [auth F]IPR020814Small ribosomal subunit protein bS6, plastid/chloroplastFamily
D [auth F]IPR035980Small ribosomal subunit protein bS6 superfamilyHomologous Superfamily
D [auth F]IPR014717Translation elongation factor EF1B/small ribosomal subunit protein bS6Homologous Superfamily
E [auth H]IPR000630Small ribosomal subunit protein uS8Family
E [auth H]IPR047863Small ribosomal subunit protein uS8, conserved siteConserved Site
E [auth H]IPR035987Small ribosomal subunit protein uS8 superfamilyHomologous Superfamily
F [auth K]IPR001971Small ribosomal subunit protein uS11Family
F [auth K]IPR019981Small ribosomal subunit protein uS11, bacterial-typeFamily
F [auth K]IPR036967Small ribosomal subunit protein uS11 superfamilyHomologous Superfamily
F [auth K]IPR018102Small ribosomal subunit protein uS11, conserved siteConserved Site
G [auth L]IPR006032Small ribosomal subunit protein uS12Family
G [auth L]IPR012340Nucleic acid-binding, OB-foldHomologous Superfamily
G [auth L]IPR005679Ribosomal protein uS12, bacterial-typeFamily
H [auth O]IPR005290Small ribosomal subunit protein uS15, bacterial-typeFamily
H [auth O]IPR009068uS15/NS1, RNA-binding domain superfamilyHomologous Superfamily
H [auth O]IPR000589Small ribosomal subunit protein uS15Family
I [auth Q]IPR019984Small ribosomal subunit protein uS17, bacteria/chloroplastFamily
I [auth Q]IPR019979Small ribosomal subunit protein uS17, conserved siteConserved Site
I [auth Q]IPR012340Nucleic acid-binding, OB-foldHomologous Superfamily
I [auth Q]IPR000266Small ribosomal subunit protein uS17Family