Domain Annotation: SCOP2 Classification SCOP2 Database Homepage

ChainsTypeFamily Name Domain Identifier Family IdentifierProvenance Source (Version)
E [auth 6]SCOP2B SuperfamilyRbfA-like 8033876 3000809 SCOP2B (2022-06-29)
H [auth B]SCOP2B SuperfamilySIS domain/Ribosomal protein S2-like 8063850 3001397 SCOP2B (2022-06-29)
O [auth I]SCOP2B SuperfamilyTranslational machinery components 8098948 3000571 SCOP2B (2022-06-29)
P [auth J]SCOP2B SuperfamilyNucleic acid-binding proteins 8095431 3000135 SCOP2B (2022-06-29)
Q [auth K]SCOP2B SuperfamilyGlucocorticoid receptor-like (DNA-binding domain) 8052599 3000068 SCOP2B (2022-06-29)
W [auth Q]SCOP2B SuperfamilyRibosomal protein S21 8053089 3002159 SCOP2B (2022-06-29)
X [auth R]SCOP2B SuperfamilyMitochondrial 28S ribosomal protein S22-like 8051932 3002074 SCOP2B (2022-06-29)
EA [auth Y]SCOP2B SuperfamilyMitochondrial 28S ribosomal protein S31-like 8090914 3002471 SCOP2B (2022-06-29)
A [auth 0]SCOP2B SuperfamilyTranslation proteins SH3-like KOW motif containing domain 8091481 3000334 SCOP2B (2022-06-29)

Domain Annotation: ECOD Classification ECOD Database Homepage

ChainsFamily NameDomain Identifier ArchitecturePossible HomologyHomologyTopologyFamilyProvenance Source (Version)
B [auth 1]PF10213e8cst11 A: a+b two layersX: dsRBD-likeH: Peptidyl-tRNA hydrolase domain-like (From Topology)T: Peptidyl-tRNA hydrolase domain-likeF: PF10213ECOD (1.6)
C [auth 3]PF08213e8cst31 A: extended segmentsX: Mitoribosomal protein mS38 (From Topology)H: Mitoribosomal protein mS38 (From Topology)T: Mitoribosomal protein mS38F: PF08213ECOD (1.6)
E [auth 6]PF02033e8cst61 A: a+b two layersX: Alpha-lytic protease prodomain-likeH: Ribosome-binding factor A (RbfA)-related (From Topology)T: Ribosome-binding factor A (RbfA)-relatedF: PF02033ECOD (1.6)
H [auth B]PF00318e8cstB1 A: a/b three-layered sandwichesX: Flavodoxin-likeH: Ribosomal protein S2/SIS domain (From Topology)T: Ribosomal protein S2/SIS domainF: PF00318ECOD (1.6)
I [auth C]PF14955e8cstC1 A: a+b two layersX: Alpha-lytic protease prodomain-likeH: KH-domainsT: Prokaryotic type KH domain (KH-domain type II)F: PF14955ECOD (1.6)
J [auth D]PF03719e8cstD1 A: a+b two layersX: Ribosomal protein S5 domain 2-like (From Topology)H: Ribosomal protein S5 domain 2-like (From Topology)T: Ribosomal protein S5 domain 2-likeF: PF03719ECOD (1.6)
J [auth D]PF00333e8cstD2 A: a+b two layersX: dsRBD-likeH: dsRNA-binding domain-like (From Topology)T: dsRNA-binding domain-likeF: PF00333ECOD (1.6)
K [auth E]PF01250e8cstE1 A: a+b two layersX: Alpha-beta plaitsH: Ribosomal protein S6 (From Topology)T: Ribosomal protein S6F: PF01250ECOD (1.6)
L [auth F]PF00177e8cstF1 A: alpha arraysX: Ribosomal protein S7 (From Topology)H: Ribosomal protein S7 (From Topology)T: Ribosomal protein S7F: PF00177ECOD (1.6)
M [auth G]PF00380e8cstG1 A: a+b two layersX: Ribosomal protein S5 domain 2-like (From Topology)H: Ribosomal protein S5 domain 2-like (From Topology)T: Ribosomal protein S5 domain 2-likeF: PF00380ECOD (1.6)
O [auth I]PF00411e8cstI1 A: mixed a+b and a/bX: Ribonuclease H-likeH: Ribonuclease H-like (From Topology)T: Ribonuclease H-likeF: PF00411ECOD (1.6)
P [auth J]PF00164e8cstJ1 A: beta barrelsX: OB-foldH: Nucleic acid-binding proteins (From Topology)T: Nucleic acid-binding proteinsF: PF00164ECOD (1.6)
Q [auth K]PF00253e8cstK1 A: few secondary structure elementsX: Glucocorticoid receptor-likeH: LIM domain-likeT: LIM domain-likeF: PF00253ECOD (1.6)
R [auth L]PF00312e8cstL1 A: alpha arraysX: S15/NS1 RNA-binding domain (From Topology)H: S15/NS1 RNA-binding domain (From Topology)T: S15/NS1 RNA-binding domainF: PF00312ECOD (1.6)
S [auth M]PF00886e8cstM1 A: a+b two layersX: Ribosomal protein S16 (From Topology)H: Ribosomal protein S16 (From Topology)T: Ribosomal protein S16F: PF00886ECOD (1.6)
V [auth P]PF01084e8cstP1 A: alpha arraysX: HTHH: HTHT: tri-helicalF: PF01084ECOD (1.6)
W [auth Q]PF01165e8cstQ1 A: extended segmentsX: 30S ribosomal protein S21 (From Topology)H: 30S ribosomal protein S21 (From Topology)T: 30S ribosomal protein S21F: PF01165ECOD (1.6)
X [auth R]PF10245e8cstR1 A: a+b complex topologyX: Mitoribosomal protein mS22 (From Topology)H: Mitoribosomal protein mS22 (From Topology)T: Mitoribosomal protein mS22F: PF10245ECOD (1.6)
Y [auth S]PF10484e8cstS1 A: alpha arraysX: RuvA-CH: Mitoribosomal protein mS23 (From Topology)T: Mitoribosomal protein mS23F: PF10484ECOD (1.6)
AA [auth U]PF14943e8cstU1 A: extended segmentsX: Mitoribosomal protein mS26 (From Topology)H: Mitoribosomal protein mS26 (From Topology)T: Mitoribosomal protein mS26F: PF14943ECOD (1.6)
BA [auth V]PF10037e8cstV1 A: alpha superhelicesX: Repetitive alpha hairpinsH: ARM repeat (From Topology)T: ARM repeatF: PF10037ECOD (1.6)
CA [auth W]PF10246e8cstW1 A: beta barrelsX: OB-foldH: Nucleic acid-binding proteins (From Topology)T: Nucleic acid-binding proteinsF: PF10246ECOD (1.6)
DA [auth X]PF10236e8cstX2 A: alpha arraysX: Histone-likeH: Histone-relatedT: AAA+ ATPase lid domainF: PF10236ECOD (1.6)
DA [auth X]PF10236e8cstX1 A: a/b three-layered sandwichesX: P-loop domains-likeH: P-loop domains-relatedT: P-loop containing nucleoside triphosphate hydrolasesF: PF10236ECOD (1.6)
FA [auth Z]PF08293e8cstZ1 A: extended segmentsX: Mitoribosomal protein mS33 (From Topology)H: Mitoribosomal protein mS33 (From Topology)T: Mitoribosomal protein mS33F: PF08293ECOD (1.6)
A [auth 0]PF16053e8cst01 A: beta barrelsX: SH3H: Mitoribosomal protein mS34 (From Topology)T: Mitoribosomal protein mS34F: PF16053ECOD (1.6)
N [auth H]PF00338e8cstH1 A: a+b two layersX: Alpha-beta plaitsH: Ribosomal protein S10 (From Topology)T: Ribosomal protein S10F: PF00338ECOD (1.6)
T [auth N]PF00366e8cstN1 A: beta barrelsX: OB-foldH: Nucleic acid-binding proteins (From Topology)T: Nucleic acid-binding proteinsF: PF00366ECOD (1.6)
U [auth O]PF01084e8cstO1 A: alpha arraysX: HTHH: HTHT: tri-helicalF: PF01084ECOD (1.6)
Z [auth T]PF05047e8cstT1 A: a+b three layersX: Thioredoxin-likeH: Thioredoxin-like (From Topology)T: Thioredoxin-likeF: PF05047ECOD (1.6)

Protein Family Annotation Pfam Database Homepage

ChainsAccessionNameDescriptionCommentsSource
B [auth 1]PF10213Mitochondrial ribosomal subunit protein (MRP-S28)Mitochondrial ribosomal subunit protein- Family
D [auth 4]PF13812Pentatricopeptide repeat domain (PPR_3)Pentatricopeptide repeat domain- Repeat
D [auth 4]PF22330Small ribosomal subunit protein mS39, PPR (Rib_mS39_PPR)Small ribosomal subunit protein mS39, PPR- Repeat
E [auth 6]PF02033Ribosome-binding factor A (RBFA)Ribosome-binding factor A- Family
F [auth 7]PF09243Mitochondrial small ribosomal subunit Rsm22 (Rsm22)Mitochondrial small ribosomal subunit Rsm22- Family
H [auth B]PF00318Ribosomal protein S2 (Ribosomal_S2)Ribosomal protein S2- Family
J [auth D]PF03719Ribosomal protein S5, C-terminal domain (Ribosomal_S5_C)Ribosomal protein S5, C-terminal domain- Domain
J [auth D]PF00333Ribosomal protein S5, N-terminal domain (Ribosomal_S5)Ribosomal protein S5, N-terminal domain- Domain
K [auth E]PF01250Ribosomal protein S6 (Ribosomal_S6)Ribosomal protein S6- Domain
L [auth F]PF00177Ribosomal protein S7p/S5e (Ribosomal_S7)Ribosomal protein S7p/S5eThis family contains ribosomal protein S7 from prokaryotes and S5 from eukaryotes.Domain
M [auth G]PF00380Ribosomal protein S9/S16 (Ribosomal_S9)Ribosomal protein S9/S16- Family
O [auth I]PF00411Ribosomal protein S11 (Ribosomal_S11)Ribosomal protein S11- Family
P [auth J]PF00164Ribosomal protein S12/S23 (Ribosom_S12_S23)Ribosomal protein S12/S23- Family
Q [auth K]PF00253Ribosomal protein S14p/S29e (Ribosomal_S14)Ribosomal protein S14p/S29e- Family
R [auth L]PF00312Ribosomal protein S15 (Ribosomal_S15)Ribosomal protein S15- Domain
S [auth M]PF00886Ribosomal protein S16 (Ribosomal_S16)Ribosomal protein S16- Family
V [auth P]PF01084Ribosomal protein S18 (Ribosomal_S18)Ribosomal protein S18- Family
W [auth Q]PF01165Ribosomal protein S21 (Ribosomal_S21)Ribosomal protein S21- Family
X [auth R]PF10245Mitochondrial 28S ribosomal protein S22 (MRP-S22)Mitochondrial 28S ribosomal protein S22- Family
Y [auth S]PF10484Mitochondrial ribosomal protein S23 (MRP-S23)Mitochondrial ribosomal protein S23- Family
AA [auth U]PF14943Mitochondrial ribosome subunit S26 (MRP-S26)Mitochondrial ribosome subunit S26- Family
DA [auth X]PF10236Mitochondrial ribosomal death-associated protein 3 (DAP3)Mitochondrial ribosomal death-associated protein 3- Family
FA [auth Z]PF08293Mitochondrial ribosomal subunit S27 (MRP-S33)Mitochondrial ribosomal subunit S27- Family
A [auth 0]PF16053Mitochondrial 28S ribosomal protein S34 (MRP-S34)Mitochondrial 28S ribosomal protein S34- Family
N [auth H]PF00338Ribosomal protein S10p/S20e (Ribosomal_S10)Ribosomal protein S10p/S20eThis family includes small ribosomal subunit S10 from prokaryotes and S20 from eukaryotes.Domain
T [auth N]PF00366Ribosomal protein S17 (Ribosomal_S17)Ribosomal protein S17- Domain
U [auth O]PF01084Ribosomal protein S18 (Ribosomal_S18)Ribosomal protein S18- Family
Z [auth T]PF05047Mitochondrial ribosomal protein L51 / S25 / CI-B8 domain (L51_S25_CI-B8)Mitochondrial ribosomal protein L51 / S25 / CI-B8 domainThe proteins in this family are located in the mitochondrion. The family includes ribosomal protein L51, and S25. This family also includes mitochondrial NADH-ubiquinone oxidoreductase B8 subunit (CI-B8) EC:1.6.5.3. It is not known whether all member ...The proteins in this family are located in the mitochondrion. The family includes ribosomal protein L51, and S25. This family also includes mitochondrial NADH-ubiquinone oxidoreductase B8 subunit (CI-B8) EC:1.6.5.3. It is not known whether all members of this family form part of the NADH-ubiquinone oxidoreductase and whether they are also all ribosomal proteins. Structurally related to thioredoxin-fold.
Domain

Gene Ontology: Gene Product Annotation Gene Ontology Database Homepage

ChainsPolymerMolecular FunctionBiological ProcessCellular Component
B [auth 1]28S ribosomal protein S35, mitochondrial
C [auth 3]Aurora kinase A-interacting protein-
D [auth 4]Pentatricopeptide repeat domain-containing protein 3, mitochondrial
E [auth 6]Putative ribosome-binding factor A, mitochondrial-
F [auth 7]Methyltransferase-like protein 17, mitochondrial
G [auth A]12S mitochondrial rRNA---
H [auth B]28S ribosomal protein S2, mitochondrial
I [auth C]28S ribosomal protein S24, mitochondrial
J [auth D]28S ribosomal protein S5, mitochondrial
K [auth E]28S ribosomal protein S6, mitochondrial
L [auth F]28S ribosomal protein S7, mitochondrial
M [auth G]28S ribosomal protein S9, mitochondrial
O [auth I]28S ribosomal protein S11, mitochondrial
P [auth J]28S ribosomal protein S12, mitochondrial
Q [auth K]28S ribosomal protein S14, mitochondrial
R [auth L]28S ribosomal protein S15, mitochondrial
S [auth M]28S ribosomal protein S16, mitochondrial
V [auth P]28S ribosomal protein S18c, mitochondrial
W [auth Q]28S ribosomal protein S21, mitochondrial
X [auth R]28S ribosomal protein S22, mitochondrial
Y [auth S]28S ribosomal protein S23, mitochondrial
AA [auth U]28S ribosomal protein S26, mitochondrial
BA [auth V]28S ribosomal protein S27, mitochondrial
CA [auth W]28S ribosomal protein S28, mitochondrial
DA [auth X]28S ribosomal protein S29, mitochondrial
EA [auth Y]28S ribosomal protein S31, mitochondrial
FA [auth Z]28S ribosomal protein S33, mitochondrial
A [auth 0]28S ribosomal protein S34, mitochondrial
N [auth H]28S ribosomal protein S10, mitochondrial-
T [auth N]28S ribosomal protein S17, mitochondrial
U [auth O]28S ribosomal protein S18b, mitochondrial
Z [auth T]28S ribosomal protein S25, mitochondrial

InterPro: Protein Family Classification InterPro Database Homepage

ChainsAccessionNameType
B [auth 1]IPR039848Small ribosomal subunit protein mS35, mitochondrialFamily
B [auth 1]IPR019349Small ribosomal subunit protein mS35, mitochondrial, conserved domainDomain
C [auth 3]IPR013177Ribosomal protein mS38, C-terminalDomain
D [auth 4]IPR037387Pentatricopeptide repeat domain-containing protein 3Family
D [auth 4]IPR011990Tetratricopeptide-like helical domain superfamilyHomologous Superfamily
D [auth 4]IPR002885Pentatricopeptide repeatRepeat
E [auth 6]IPR015946K homology domain-like, alpha/betaHomologous Superfamily
E [auth 6]IPR039212Ribosome-binding factor A, mitochondrialFamily
E [auth 6]IPR020053Ribosome-binding factor A, conserved siteConserved Site
E [auth 6]IPR023799Ribosome-binding factor A domain superfamilyHomologous Superfamily
E [auth 6]IPR000238Ribosome-binding factor AFamily
F [auth 7]IPR015324Ribosomal protein Rsm22-likeFamily
F [auth 7]IPR029063S-adenosyl-L-methionine-dependent methyltransferase superfamilyHomologous Superfamily
F [auth 7]IPR052571Mitochondrial RNA MethyltransferaseFamily
H [auth B]IPR005706Small ribosomal subunit protein uS2, bacteria/mitochondria/plastidFamily
H [auth B]IPR023591Small ribosomal subunit protein uS2, flavodoxin-like domain superfamilyHomologous Superfamily
H [auth B]IPR018130Small ribosomal subunit protein uS2, conserved siteConserved Site
H [auth B]IPR001865Small ribosomal subunit protein uS2Family
I [auth C]IPR026146Small ribosomal subunit protein uS3m, metazoanFamily
J [auth D]IPR000851Small ribosomal subunit protein uS5Family
J [auth D]IPR048584Small ribosomal subunit protein uS5m, N-terminal domainDomain
J [auth D]IPR005324Small ribosomal subunit protein uS5, C-terminalDomain
J [auth D]IPR013810Small ribosomal subunit protein uS5, N-terminalDomain
J [auth D]IPR020568Ribosomal protein uS5 domain 2-type superfamilyHomologous Superfamily
J [auth D]IPR018192Small ribosomal subunit protein uS5, N-terminal, conserved siteConserved Site
J [auth D]IPR014721Small ribosomal subunit protein uS5 domain 2-type fold, subgroupHomologous Superfamily
K [auth E]IPR000529Small ribosomal subunit protein bS6Family
K [auth E]IPR035980Small ribosomal subunit protein bS6 superfamilyHomologous Superfamily
K [auth E]IPR014717Translation elongation factor EF1B/small ribosomal subunit protein bS6Homologous Superfamily
L [auth F]IPR036823Small ribosomal subunit protein uS7 domain superfamilyHomologous Superfamily
L [auth F]IPR000235Small ribosomal subunit protein uS7Family
L [auth F]IPR023798Small ribosomal subunit protein uS7 domainDomain
M [auth G]IPR020574Small ribosomal subunit protein uS9, conserved siteConserved Site
M [auth G]IPR020568Ribosomal protein uS5 domain 2-type superfamilyHomologous Superfamily
M [auth G]IPR000754Small ribosomal subunit protein uS9Family
M [auth G]IPR014721Small ribosomal subunit protein uS5 domain 2-type fold, subgroupHomologous Superfamily
O [auth I]IPR001971Small ribosomal subunit protein uS11Family
O [auth I]IPR036967Small ribosomal subunit protein uS11 superfamilyHomologous Superfamily
O [auth I]IPR018102Small ribosomal subunit protein uS11, conserved siteConserved Site
P [auth J]IPR006032Small ribosomal subunit protein uS12Family
P [auth J]IPR012340Nucleic acid-binding, OB-foldHomologous Superfamily
P [auth J]IPR005679Ribosomal protein uS12, bacterial-typeFamily
Q [auth K]IPR001209Small ribosomal subunit protein uS14Family
R [auth L]IPR009068uS15/NS1, RNA-binding domain superfamilyHomologous Superfamily
R [auth L]IPR000589Small ribosomal subunit protein uS15Family
R [auth L]IPR005290Small ribosomal subunit protein uS15, bacterial-typeFamily
R [auth L]IPR052137Universal small ribosomal subunit uS15Family
S [auth M]IPR023803Small ribosomal subunit protein bS16 domain superfamilyHomologous Superfamily
S [auth M]IPR000307Small ribosomal subunit protein bS16Family
V [auth P]IPR001648Small ribosomal subunit protein bS18Family
V [auth P]IPR018275Small ribosomal subunit protein bS18, conserved siteConserved Site
V [auth P]IPR036870Small ribosomal subunit protein bS18 superfamilyHomologous Superfamily
W [auth Q]IPR038380Small ribosomal subunit protein bS21 superfamilyHomologous Superfamily
W [auth Q]IPR001911Small ribosomal subunit protein bS21Family
X [auth R]IPR019374Small ribosomal subunit protein mS22Family
Y [auth S]IPR023611Small ribosomal subunit protein mS23, conserved domainDomain
Y [auth S]IPR019520Small ribosomal subunit protein mS23, metazoaFamily
AA [auth U]IPR026140Small ribosomal subunit protein mS26Family
BA [auth V]IPR011990Tetratricopeptide-like helical domain superfamilyHomologous Superfamily
BA [auth V]IPR002885Pentatricopeptide repeatRepeat
BA [auth V]IPR019266Small ribosomal subunit protein mS27Family
BA [auth V]IPR034913mS27/PTCD2Family
CA [auth W]IPR019375Small ribosomal subunit protein bS1mFamily
DA [auth X]IPR008092Small ribosomal subunit protein mS29, metazoan-typeFamily
DA [auth X]IPR019368Small ribosomal subunit protein mS29Family
DA [auth X]IPR027417P-loop containing nucleoside triphosphate hydrolaseHomologous Superfamily
EA [auth Y]IPR026299Mitochondrial 28S ribosomal protein S31Family
FA [auth Z]IPR013219Small ribosomal subunit protein mS33Family
A [auth 0]IPR032053Small ribosomal subunit protein mS34Family
N [auth H]IPR027486Small ribosomal subunit protein uS10 domainDomain
N [auth H]IPR040055Small ribosomal subunit protein uS10mFamily
N [auth H]IPR036838Small ribosomal subunit protein uS10 domain superfamilyHomologous Superfamily
T [auth N]IPR039193Small ribosomal subunit protein uS17m, metazoaFamily
T [auth N]IPR012340Nucleic acid-binding, OB-foldHomologous Superfamily
T [auth N]IPR000266Small ribosomal subunit protein uS17Family
U [auth O]IPR040054Small ribosomal subunit protein mS40Family
U [auth O]IPR001648Small ribosomal subunit protein bS18Family
U [auth O]IPR036870Small ribosomal subunit protein bS18 superfamilyHomologous Superfamily
Z [auth T]IPR007741Ribosomal protein/NADH dehydrogenase domainDomain
Z [auth T]IPR036249Thioredoxin-like superfamilyHomologous Superfamily
Z [auth T]IPR040049Ribosomal subunit protein mS25/mL61, mitochondrialFamily

Pharos: Disease Associations Pharos Homepage Annotation

ChainsDrug Target  Associated Disease
B [auth 1]PharosP82673
C [auth 3]PharosQ9NWT8
D [auth 4]PharosQ96EY7
E [auth 6]PharosQ8N0V3
F [auth 7]PharosQ9H7H0
H [auth B]PharosQ9Y399
J [auth D]PharosP82675
K [auth E]PharosP82932
L [auth F]PharosQ9Y2R9
M [auth G]PharosP82933
O [auth I]PharosP82912
P [auth J]PharosO15235
Q [auth K]PharosO60783
R [auth L]PharosP82914
S [auth M]PharosQ9Y3D3
V [auth P]PharosQ9Y3D5
W [auth Q]PharosP82921
X [auth R]PharosP82650
Y [auth S]PharosQ9Y3D9
BA [auth V]PharosQ92552
CA [auth W]PharosQ9Y2Q9
DA [auth X]PharosP51398
EA [auth Y]PharosQ92665
FA [auth Z]PharosQ9Y291
A [auth 0]PharosP82930
N [auth H]PharosP82664
T [auth N]PharosQ9Y2R5
U [auth O]PharosQ9Y676
Z [auth T]PharosP82663