8CO6

Subtomogram average of Immature Rotavirus TLP penton

External Resource: Annotation

Domain Annotation: ECOD Classification
Protein Family Annotation
Gene Ontology: Gene Product Annotation
InterPro: Protein Family Classification

Domain Annotation: ECOD Classification ECOD Database Homepage

Chains	Family Name	Domain Identifier	Architecture	Possible Homology	Homology	Topology	Family	Provenance Source (Version)
A	PF00426	e8co6A1	A: beta sandwiches	X: jelly-roll	H: Concanavalin A-like	T: Concanavalin A-like lectins/glucanases	F: PF00426	ECOD (1.6)
A	PF17477	e8co6A2	A: beta sandwiches	X: VP4 membrane interaction domain (From Topology)	H: VP4 membrane interaction domain (From Topology)	T: VP4 membrane interaction domain	F: PF17477	ECOD (1.6)
A	PF17478	e8co6A3	A: alpha complex topology	X: Helical domain in outer capsid protein VP4 (From Topology)	H: Helical domain in outer capsid protein VP4 (From Topology)	T: Helical domain in outer capsid protein VP4	F: PF17478	ECOD (1.6)
C	PF00426	e8co6C2	A: beta sandwiches	X: jelly-roll	H: Concanavalin A-like	T: Concanavalin A-like lectins/glucanases	F: PF00426	ECOD (1.6)
C	PF17477	e8co6C1	A: beta sandwiches	X: VP4 membrane interaction domain (From Topology)	H: VP4 membrane interaction domain (From Topology)	T: VP4 membrane interaction domain	F: PF17477	ECOD (1.6)
C	PF17478	e8co6C3	A: alpha complex topology	X: Helical domain in outer capsid protein VP4 (From Topology)	H: Helical domain in outer capsid protein VP4 (From Topology)	T: Helical domain in outer capsid protein VP4	F: PF17478	ECOD (1.6)
B	PF00426	e8co6B2	A: beta sandwiches	X: jelly-roll	H: Concanavalin A-like	T: Concanavalin A-like lectins/glucanases	F: PF00426	ECOD (1.6)
B	PF17477	e8co6B1	A: beta sandwiches	X: VP4 membrane interaction domain (From Topology)	H: VP4 membrane interaction domain (From Topology)	T: VP4 membrane interaction domain	F: PF17477	ECOD (1.6)
B	PF17478	e8co6B3	A: alpha complex topology	X: Helical domain in outer capsid protein VP4 (From Topology)	H: Helical domain in outer capsid protein VP4 (From Topology)	T: Helical domain in outer capsid protein VP4	F: PF17478	ECOD (1.6)
D	PF00434	e8co6D2	A: beta sandwiches	X: jelly-roll	H: Jelly-roll domain in outer capsid glycoprotein VP7 (From Topology)	T: Jelly-roll domain in outer capsid glycoprotein VP7	F: PF00434	ECOD (1.6)
D	PF00434	e8co6D1	A: a/b three-layered sandwiches	X: Flavodoxin-like	H: Flavodoxin-like domain in outer capsid glycoprotein VP7 (From Topology)	T: Flavodoxin-like domain in outer capsid glycoprotein VP7	F: PF00434	ECOD (1.6)
E	PF00434	e8co6E1	A: beta sandwiches	X: jelly-roll	H: Jelly-roll domain in outer capsid glycoprotein VP7 (From Topology)	T: Jelly-roll domain in outer capsid glycoprotein VP7	F: PF00434	ECOD (1.6)
E	PF00434	e8co6E2	A: a/b three-layered sandwiches	X: Flavodoxin-like	H: Flavodoxin-like domain in outer capsid glycoprotein VP7 (From Topology)	T: Flavodoxin-like domain in outer capsid glycoprotein VP7	F: PF00434	ECOD (1.6)
F	PF00434	e8co6F2	A: beta sandwiches	X: jelly-roll	H: Jelly-roll domain in outer capsid glycoprotein VP7 (From Topology)	T: Jelly-roll domain in outer capsid glycoprotein VP7	F: PF00434	ECOD (1.6)
F	PF00434	e8co6F1	A: a/b three-layered sandwiches	X: Flavodoxin-like	H: Flavodoxin-like domain in outer capsid glycoprotein VP7 (From Topology)	T: Flavodoxin-like domain in outer capsid glycoprotein VP7	F: PF00434	ECOD (1.6)
G	PF00434	e8co6G1	A: beta sandwiches	X: jelly-roll	H: Jelly-roll domain in outer capsid glycoprotein VP7 (From Topology)	T: Jelly-roll domain in outer capsid glycoprotein VP7	F: PF00434	ECOD (1.6)
G	PF00434	e8co6G2	A: a/b three-layered sandwiches	X: Flavodoxin-like	H: Flavodoxin-like domain in outer capsid glycoprotein VP7 (From Topology)	T: Flavodoxin-like domain in outer capsid glycoprotein VP7	F: PF00434	ECOD (1.6)
H	PF00434	e8co6H1	A: beta sandwiches	X: jelly-roll	H: Jelly-roll domain in outer capsid glycoprotein VP7 (From Topology)	T: Jelly-roll domain in outer capsid glycoprotein VP7	F: PF00434	ECOD (1.6)
H	PF00434	e8co6H2	A: a/b three-layered sandwiches	X: Flavodoxin-like	H: Flavodoxin-like domain in outer capsid glycoprotein VP7 (From Topology)	T: Flavodoxin-like domain in outer capsid glycoprotein VP7	F: PF00434	ECOD (1.6)
I	PF00434	e8co6I2	A: beta sandwiches	X: jelly-roll	H: Jelly-roll domain in outer capsid glycoprotein VP7 (From Topology)	T: Jelly-roll domain in outer capsid glycoprotein VP7	F: PF00434	ECOD (1.6)
I	PF00434	e8co6I1	A: a/b three-layered sandwiches	X: Flavodoxin-like	H: Flavodoxin-like domain in outer capsid glycoprotein VP7 (From Topology)	T: Flavodoxin-like domain in outer capsid glycoprotein VP7	F: PF00434	ECOD (1.6)
J	PF00434	e8co6J1	A: beta sandwiches	X: jelly-roll	H: Jelly-roll domain in outer capsid glycoprotein VP7 (From Topology)	T: Jelly-roll domain in outer capsid glycoprotein VP7	F: PF00434	ECOD (1.6)
J	PF00434	e8co6J2	A: a/b three-layered sandwiches	X: Flavodoxin-like	H: Flavodoxin-like domain in outer capsid glycoprotein VP7 (From Topology)	T: Flavodoxin-like domain in outer capsid glycoprotein VP7	F: PF00434	ECOD (1.6)
K	PF00434	e8co6K2	A: beta sandwiches	X: jelly-roll	H: Jelly-roll domain in outer capsid glycoprotein VP7 (From Topology)	T: Jelly-roll domain in outer capsid glycoprotein VP7	F: PF00434	ECOD (1.6)
K	PF00434	e8co6K1	A: a/b three-layered sandwiches	X: Flavodoxin-like	H: Flavodoxin-like domain in outer capsid glycoprotein VP7 (From Topology)	T: Flavodoxin-like domain in outer capsid glycoprotein VP7	F: PF00434	ECOD (1.6)
L	PF00434	e8co6L1	A: beta sandwiches	X: jelly-roll	H: Jelly-roll domain in outer capsid glycoprotein VP7 (From Topology)	T: Jelly-roll domain in outer capsid glycoprotein VP7	F: PF00434	ECOD (1.6)
L	PF00434	e8co6L2	A: a/b three-layered sandwiches	X: Flavodoxin-like	H: Flavodoxin-like domain in outer capsid glycoprotein VP7 (From Topology)	T: Flavodoxin-like domain in outer capsid glycoprotein VP7	F: PF00434	ECOD (1.6)
M	PF00434	e8co6M1	A: beta sandwiches	X: jelly-roll	H: Jelly-roll domain in outer capsid glycoprotein VP7 (From Topology)	T: Jelly-roll domain in outer capsid glycoprotein VP7	F: PF00434	ECOD (1.6)
M	PF00434	e8co6M2	A: a/b three-layered sandwiches	X: Flavodoxin-like	H: Flavodoxin-like domain in outer capsid glycoprotein VP7 (From Topology)	T: Flavodoxin-like domain in outer capsid glycoprotein VP7	F: PF00434	ECOD (1.6)
N	PF00434	e8co6N2	A: beta sandwiches	X: jelly-roll	H: Jelly-roll domain in outer capsid glycoprotein VP7 (From Topology)	T: Jelly-roll domain in outer capsid glycoprotein VP7	F: PF00434	ECOD (1.6)
N	PF00434	e8co6N1	A: a/b three-layered sandwiches	X: Flavodoxin-like	H: Flavodoxin-like domain in outer capsid glycoprotein VP7 (From Topology)	T: Flavodoxin-like domain in outer capsid glycoprotein VP7	F: PF00434	ECOD (1.6)
O	PF00434	e8co6O2	A: beta sandwiches	X: jelly-roll	H: Jelly-roll domain in outer capsid glycoprotein VP7 (From Topology)	T: Jelly-roll domain in outer capsid glycoprotein VP7	F: PF00434	ECOD (1.6)
O	PF00434	e8co6O1	A: a/b three-layered sandwiches	X: Flavodoxin-like	H: Flavodoxin-like domain in outer capsid glycoprotein VP7 (From Topology)	T: Flavodoxin-like domain in outer capsid glycoprotein VP7	F: PF00434	ECOD (1.6)
AA [auth o]	PF00980	e8co6o2	A: beta sandwiches	X: jelly-roll	H: Viral protein domain (From Topology)	T: Viral protein domain	F: PF00980	ECOD (1.6)
AA [auth o]	PF00980	e8co6o1	A: alpha bundles	X: A virus capsid protein alpha-helical domain (From Topology)	H: A virus capsid protein alpha-helical domain (From Topology)	T: A virus capsid protein alpha-helical domain	F: PF00980	ECOD (1.6)
P [auth d]	PF00980	e8co6d2	A: beta sandwiches	X: jelly-roll	H: Viral protein domain (From Topology)	T: Viral protein domain	F: PF00980	ECOD (1.6)
P [auth d]	PF00980	e8co6d1	A: alpha bundles	X: A virus capsid protein alpha-helical domain (From Topology)	H: A virus capsid protein alpha-helical domain (From Topology)	T: A virus capsid protein alpha-helical domain	F: PF00980	ECOD (1.6)
R [auth f]	PF00980	e8co6f2	A: beta sandwiches	X: jelly-roll	H: Viral protein domain (From Topology)	T: Viral protein domain	F: PF00980	ECOD (1.6)
R [auth f]	PF00980	e8co6f1	A: alpha bundles	X: A virus capsid protein alpha-helical domain (From Topology)	H: A virus capsid protein alpha-helical domain (From Topology)	T: A virus capsid protein alpha-helical domain	F: PF00980	ECOD (1.6)
S [auth g]	PF00980	e8co6g2	A: beta sandwiches	X: jelly-roll	H: Viral protein domain (From Topology)	T: Viral protein domain	F: PF00980	ECOD (1.6)
S [auth g]	PF00980	e8co6g1	A: alpha bundles	X: A virus capsid protein alpha-helical domain (From Topology)	H: A virus capsid protein alpha-helical domain (From Topology)	T: A virus capsid protein alpha-helical domain	F: PF00980	ECOD (1.6)
T [auth h]	PF00980	e8co6h1	A: beta sandwiches	X: jelly-roll	H: Viral protein domain (From Topology)	T: Viral protein domain	F: PF00980	ECOD (1.6)
T [auth h]	PF00980	e8co6h2	A: alpha bundles	X: A virus capsid protein alpha-helical domain (From Topology)	H: A virus capsid protein alpha-helical domain (From Topology)	T: A virus capsid protein alpha-helical domain	F: PF00980	ECOD (1.6)
U [auth i]	PF00980	e8co6i2	A: beta sandwiches	X: jelly-roll	H: Viral protein domain (From Topology)	T: Viral protein domain	F: PF00980	ECOD (1.6)
U [auth i]	PF00980	e8co6i1	A: alpha bundles	X: A virus capsid protein alpha-helical domain (From Topology)	H: A virus capsid protein alpha-helical domain (From Topology)	T: A virus capsid protein alpha-helical domain	F: PF00980	ECOD (1.6)
V [auth j]	PF00980	e8co6j2	A: beta sandwiches	X: jelly-roll	H: Viral protein domain (From Topology)	T: Viral protein domain	F: PF00980	ECOD (1.6)
V [auth j]	PF00980	e8co6j1	A: alpha bundles	X: A virus capsid protein alpha-helical domain (From Topology)	H: A virus capsid protein alpha-helical domain (From Topology)	T: A virus capsid protein alpha-helical domain	F: PF00980	ECOD (1.6)
W [auth k]	PF00980	e8co6k1	A: beta sandwiches	X: jelly-roll	H: Viral protein domain (From Topology)	T: Viral protein domain	F: PF00980	ECOD (1.6)
W [auth k]	PF00980	e8co6k2	A: alpha bundles	X: A virus capsid protein alpha-helical domain (From Topology)	H: A virus capsid protein alpha-helical domain (From Topology)	T: A virus capsid protein alpha-helical domain	F: PF00980	ECOD (1.6)
X [auth l]	PF00980	e8co6l2	A: beta sandwiches	X: jelly-roll	H: Viral protein domain (From Topology)	T: Viral protein domain	F: PF00980	ECOD (1.6)
X [auth l]	PF00980	e8co6l1	A: alpha bundles	X: A virus capsid protein alpha-helical domain (From Topology)	H: A virus capsid protein alpha-helical domain (From Topology)	T: A virus capsid protein alpha-helical domain	F: PF00980	ECOD (1.6)
Y [auth m]	PF00980	e8co6m2	A: beta sandwiches	X: jelly-roll	H: Viral protein domain (From Topology)	T: Viral protein domain	F: PF00980	ECOD (1.6)
Y [auth m]	PF00980	e8co6m1	A: alpha bundles	X: A virus capsid protein alpha-helical domain (From Topology)	H: A virus capsid protein alpha-helical domain (From Topology)	T: A virus capsid protein alpha-helical domain	F: PF00980	ECOD (1.6)
Z [auth n]	PF00980	e8co6n2	A: beta sandwiches	X: jelly-roll	H: Viral protein domain (From Topology)	T: Viral protein domain	F: PF00980	ECOD (1.6)
Z [auth n]	PF00980	e8co6n1	A: alpha bundles	X: A virus capsid protein alpha-helical domain (From Topology)	H: A virus capsid protein alpha-helical domain (From Topology)	T: A virus capsid protein alpha-helical domain	F: PF00980	ECOD (1.6)
Q [auth e]	PF00980	e8co6e2	A: beta sandwiches	X: jelly-roll	H: Viral protein domain (From Topology)	T: Viral protein domain	F: PF00980	ECOD (1.6)
Q [auth e]	PF00980	e8co6e1	A: alpha bundles	X: A virus capsid protein alpha-helical domain (From Topology)	H: A virus capsid protein alpha-helical domain (From Topology)	T: A virus capsid protein alpha-helical domain	F: PF00980	ECOD (1.6)
BA [auth q]	PF05087	e8co6q1	A: a+b complex topology	X: Inner layer core protein p3-related (From Topology)	H: Inner layer core protein p3-related (From Topology)	T: Inner layer core protein p3-related	F: PF05087	ECOD (1.6)
CA [auth r]	PF05087	e8co6r1	A: a+b complex topology	X: Inner layer core protein p3-related (From Topology)	H: Inner layer core protein p3-related (From Topology)	T: Inner layer core protein p3-related	F: PF05087	ECOD (1.6)

Protein Family Annotation Pfam Database Homepage

Chains	Accession	Name	Description	Comments	Source
A, B, C	PF00426	Outer Capsid protein VP4 (Hemagglutinin) Concanavalin-like domain (VP4_haemagglut)	Outer Capsid protein VP4 (Hemagglutinin) Concanavalin-like domain	This entry represents the N-terminal concanavalin-like domain from the VP4 protein of rotavirus.	Domain
A, B, C	PF17477	Rotavirus VP4 membrane interaction domain (Rota_VP4_MID)	Rotavirus VP4 membrane interaction domain	This entry represents the VP4 membrane interaction domain.	Domain
A, B, C	PF17478	Rotavirus VP4 helical domain (VP4_helical)	Rotavirus VP4 helical domain	-	Domain
D, E, F, G, H D, E, F, G, H, I, J, K, L, M, N, O	PF00980	Rotavirus major capsid protein VP6 (Rota_Capsid_VP6)	Rotavirus major capsid protein VP6	-	Family

Gene Ontology: Gene Product Annotation Gene Ontology Database Homepage

Chains	Polymer	Molecular Function	Biological Process	Cellular Component
A, B, C	Outer capsid protein VP4	-	virion attachment to host cell biological process involved in interspecies interaction between organisms adhesion of symbiont to host cell viral process viral life cycle adhesion of symbiont to host biological process involved in interaction with host biological process involved in symbiotic interaction symbiont-mediated disruption of host anatomical structure symbiont entry into host cell via permeabilization of inner membrane symbiont entry into host cell via permeabilization of host membrane symbiont-mediated perturbation of host membrane symbiont-mediated disruption of host cellular anatomical entity symbiont entry into host cell virion attachment to host cell biological process involved in interspecies interaction between organisms adhesion of symbiont to host cell viral process viral life cycle adhesion of symbiont to host biological process involved in interaction with host biological process involved in symbiotic interaction symbiont-mediated disruption of host anatomical structure symbiont entry into host cell via permeabilization of inner membrane symbiont entry into host cell via permeabilization of host membrane symbiont-mediated perturbation of host membrane symbiont-mediated disruption of host cellular anatomical entity symbiont entry into host cell symbiont entry into host disruption of anatomical structure in another organism permeabilization of host organelle membrane involved in viral entry into host cell	host cellular component host intracellular part host cytoskeleton host cell part host intracellular region cellular anatomical entity host intracellular organelle membrane host intracellular membrane-bounded organelle host cell endoplasmic reticulum-Golgi intermediate compartment host cell cytoplasm host cell cytoplasm part host cell plasma membrane host cell membrane host cellular component host intracellular part host cytoskeleton host cell part host intracellular region cellular anatomical entity host intracellular organelle membrane host intracellular membrane-bounded organelle host cell endoplasmic reticulum-Golgi intermediate compartment host cell cytoplasm host cell cytoplasm part host cell plasma membrane host cell membrane viral capsid icosahedral viral capsid virion component viral outer capsid host cell endoplasmic reticulum host cell rough endoplasmic reticulum
D, E, F, G, H D, E, F, G, H, I, J, K, L, M, N, O	Outer capsid glycoprotein VP7	cation binding ion binding binding metal ion binding small molecule binding	-	host intracellular membrane-bounded organelle host cellular component host intracellular part host cell endoplasmic reticulum cellular anatomical entity host cell cytoplasm part host intracellular organelle host cell cytoplasm host cell part host cell endoplasmic reticulum lumen host intracellular region membrane viral capsid icosahedral viral capsid host intracellular membrane-bounded organelle host cellular component host intracellular part host cell endoplasmic reticulum cellular anatomical entity host cell cytoplasm part host intracellular organelle host cell cytoplasm host cell part host cell endoplasmic reticulum lumen host intracellular region membrane viral capsid icosahedral viral capsid virion component viral outer capsid T=13 icosahedral viral capsid
AA [auth o], P [auth d], Q [auth e], R [auth f], S [auth g], AA [auth o], P [auth d], Q [auth e], R [auth f], S [auth g], T [auth h], U [auth i], V [auth j], W [auth k], X [auth l], Y [auth m], Z [auth n]	Intermediate capsid protein VP6	structural molecule activity cation binding ion binding binding metal ion binding small molecule binding host cell surface binding host cell surface receptor binding	membrane organization cellular component organization membrane fusion fusion of virus membrane with host plasma membrane viral process cellular process cellular component organization or biogenesis membrane fusion involved in viral entry into host cell	virion component viral membrane viral envelope viral capsid icosahedral viral capsid viral intermediate capsid
BA [auth q], CA [auth r]	Inner capsid protein VP2	RNA binding binding organic cyclic compound binding nucleic acid binding	-	viral capsid icosahedral viral capsid virion component viral inner capsid viral nucleocapsid T=2 icosahedral viral capsid

InterPro: Protein Family Classification InterPro Database Homepage

Chains	Accession	Name	Type
A, B, C	IPR000416	Haemagglutinin outer capsid protein VP4, concanavalin-like domain	Domain
A, B, C	IPR035330	Rotavirus VP4, membrane interaction domain	Domain
A, B, C	IPR013320	Concanavalin A-like lectin/glucanase domain superfamily	Homologous Superfamily
A, B, C	IPR035329	Rotavirus VP4 helical domain	Domain
A, B, C	IPR042546	Outer capsid protein VP4	Family
A, B, C	IPR038017	Rotavirus VP4, membrane interaction domain superfamily	Homologous Superfamily
D, E, F, G, H D, E, F, G, H, I, J, K, L, M, N, O	IPR042207	Glycoprotein VP7, domain 1	Homologous Superfamily
D, E, F, G, H D, E, F, G, H, I, J, K, L, M, N, O	IPR001963	Glycoprotein VP7	Family
D, E, F, G, H D, E, F, G, H, I, J, K, L, M, N, O	IPR042210	Glycoprotein VP7, domain 2	Homologous Superfamily
AA [auth o], P [auth d], Q [auth e], R [auth f], S [auth g], AA [auth o], P [auth d], Q [auth e], R [auth f], S [auth g], T [auth h], U [auth i], V [auth j], W [auth k], X [auth l], Y [auth m], Z [auth n]	IPR001385	Rotavirus A/C, major capsid protein VP6	Family
AA [auth o], P [auth d], Q [auth e], R [auth f], S [auth g], AA [auth o], P [auth d], Q [auth e], R [auth f], S [auth g], T [auth h], U [auth i], V [auth j], W [auth k], X [auth l], Y [auth m], Z [auth n]	IPR008935	Virus capsid protein, alpha-helical	Homologous Superfamily
AA [auth o], P [auth d], Q [auth e], R [auth f], S [auth g], AA [auth o], P [auth d], Q [auth e], R [auth f], S [auth g], T [auth h], U [auth i], V [auth j], W [auth k], X [auth l], Y [auth m], Z [auth n]	IPR008980	Viral capsid/haemagglutinin protein	Homologous Superfamily
BA [auth q], CA [auth r]	IPR007779	Rotavirus VP2	Family