8CO1 | pdb_00008co1

Type II Secretion System

External Resource: Annotation

Protein Family Annotation
Gene Ontology: Gene Product Annotation
InterPro: Protein Family Classification

Protein Family Annotation Pfam Database Homepage

Chains	Accession	Name	Description	Comments	Source
A [auth Q1], BA [auth F1], D [auth P1], EA [auth G1], G [auth O1], A [auth Q1], BA [auth F1], D [auth P1], EA [auth G1], G [auth O1], HA [auth E1], J [auth N1], KA [auth D1], M [auth M1], NA [auth C1], P [auth L1], QA [auth B1], S [auth A1], V [auth I1], Y [auth H1]	PF03958	Bacterial type II/III secretion system short domain (Secretin_N)	Bacterial type II/III secretion system short domain	This is a short, often repeated, domain found in bacterial type II/III secretory system proteins. All previous NolW-like domains fall into this family.	Domain
A [auth Q1], BA [auth F1], D [auth P1], EA [auth G1], G [auth O1], A [auth Q1], BA [auth F1], D [auth P1], EA [auth G1], G [auth O1], HA [auth E1], J [auth N1], KA [auth D1], M [auth M1], NA [auth C1], P [auth L1], QA [auth B1], S [auth A1], V [auth I1], Y [auth H1]	PF00263	Bacterial type II and III secretion system protein (Secretin)	Bacterial type II and III secretion system protein	-	Family

Gene Ontology: Gene Product Annotation Gene Ontology Database Homepage

Chains	Polymer	Molecular Function	Biological Process	Cellular Component
AA [auth H3], C [auth Q3], DA [auth F3], F [auth P3], GA [auth G3], AA [auth H3], C [auth Q3], DA [auth F3], F [auth P3], GA [auth G3], I [auth O3], JA [auth E3], L [auth N3], MA [auth D3], O [auth M3], PA [auth C3], R [auth L3], SA [auth B3], U [auth A3], X [auth I3]	Lipoprotein	-	-	cell outer membrane cellular anatomical structure external encapsulating structure extracellular region membrane cell envelope outer membrane
B [auth Q2], CA [auth F2], E [auth P2], FA [auth G2], H [auth O2], B [auth Q2], CA [auth F2], E [auth P2], FA [auth G2], H [auth O2], IA [auth E2], K [auth N2], LA [auth D2], N [auth M2], OA [auth C2], Q [auth L2], RA [auth B2], T [auth A2], W [auth I2], Z [auth H2]	IPT/TIG domain-containing protein	-	-	cell outer membrane cellular anatomical structure external encapsulating structure extracellular region membrane cell envelope outer membrane
A [auth Q1], BA [auth F1], D [auth P1], EA [auth G1], G [auth O1], A [auth Q1], BA [auth F1], D [auth P1], EA [auth G1], G [auth O1], HA [auth E1], J [auth N1], KA [auth D1], M [auth M1], NA [auth C1], P [auth L1], QA [auth B1], S [auth A1], V [auth I1], Y [auth H1]	Probable type IV piliation system protein DR_0774	-	establishment of protein localization transport secretion establishment of protein localization to extracellular region export from cell protein secretion establishment of localization protein localization to extracellular region localization secretion by cell protein transport macromolecule localization cellular process intracellular protein localization	cellular anatomical structure extracellular region periplasmic space protein-containing complex type II protein secretion system complex cell outer membrane external encapsulating structure membrane cell envelope outer membrane

InterPro: Protein Family Classification InterPro Database Homepage

Chains	Accession	Name	Type
B [auth Q2], CA [auth F2], E [auth P2], FA [auth G2], H [auth O2], B [auth Q2], CA [auth F2], E [auth P2], FA [auth G2], H [auth O2], IA [auth E2], K [auth N2], LA [auth D2], N [auth M2], OA [auth C2], Q [auth L2], RA [auth B2], T [auth A2], W [auth I2], Z [auth H2]	IPR013783	Immunoglobulin-like fold	Homologous Superfamily
B [auth Q2], CA [auth F2], E [auth P2], FA [auth G2], H [auth O2], B [auth Q2], CA [auth F2], E [auth P2], FA [auth G2], H [auth O2], IA [auth E2], K [auth N2], LA [auth D2], N [auth M2], OA [auth C2], Q [auth L2], RA [auth B2], T [auth A2], W [auth I2], Z [auth H2]	IPR014756	Immunoglobulin E-set	Homologous Superfamily
A [auth Q1], BA [auth F1], D [auth P1], EA [auth G1], G [auth O1], A [auth Q1], BA [auth F1], D [auth P1], EA [auth G1], G [auth O1], HA [auth E1], J [auth N1], KA [auth D1], M [auth M1], NA [auth C1], P [auth L1], QA [auth B1], S [auth A1], V [auth I1], Y [auth H1]	IPR050810	Bacterial Secretion System Channel Protein	Family
A [auth Q1], BA [auth F1], D [auth P1], EA [auth G1], G [auth O1], A [auth Q1], BA [auth F1], D [auth P1], EA [auth G1], G [auth O1], HA [auth E1], J [auth N1], KA [auth D1], M [auth M1], NA [auth C1], P [auth L1], QA [auth B1], S [auth A1], V [auth I1], Y [auth H1]	IPR005644	NolW-like	Domain
A [auth Q1], BA [auth F1], D [auth P1], EA [auth G1], G [auth O1], A [auth Q1], BA [auth F1], D [auth P1], EA [auth G1], G [auth O1], HA [auth E1], J [auth N1], KA [auth D1], M [auth M1], NA [auth C1], P [auth L1], QA [auth B1], S [auth A1], V [auth I1], Y [auth H1]	IPR004846	Type II/III secretion system, secretin-like domain	Domain
A [auth Q1], BA [auth F1], D [auth P1], EA [auth G1], G [auth O1], A [auth Q1], BA [auth F1], D [auth P1], EA [auth G1], G [auth O1], HA [auth E1], J [auth N1], KA [auth D1], M [auth M1], NA [auth C1], P [auth L1], QA [auth B1], S [auth A1], V [auth I1], Y [auth H1]	IPR038591	NolW-like superfamily	Homologous Superfamily

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RCSB PDB Core Operations are funded by the U.S. National Science Foundation (DBI-2321666), the US Department of Energy (DE-SC0019749), and the National Cancer Institute, National Institute of Allergy and Infectious Diseases, and National Institute of General Medical Sciences of the National Institutes of Health under grant R01GM157729. RCSB PDB uses resources of the National Energy Research Scientific Computing Center (NERSC), a Department of Energy User Facility.