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HIV-1 mature capsid hexamer from CA-IP6 CLPs, bound to Sec24C peptide. External Resource: Annotation Chains Type Family Name Domain Identifier Family Identifier Provenance Source (Version) A SCOP2B Superfamily Retrovirus capsid dimerization domain-like 8077054 3001819 SCOP2B (2021-05-27)
Chains Family Name Domain Identifier Architecture Possible Homology Homology Topology Family Provenance Source (Version) A PF19317 e8cl3A1 A: alpha bundles X: Retrovirus capsid protein H: Retrovirus capsid protein-C (From Topology) T: Retrovirus capsid protein-C F: PF19317 ECOD (1.6) A PF00607 e8cl3A2 A: alpha bundles X: Retrovirus capsid protein H: Retrovirus capsid protein N-terminal domain (From Topology) T: Retrovirus capsid protein N-terminal domain F: PF00607 ECOD (1.6)
Chains Accession Name Description Comments Source PF00607 gag protein p24 N-terminal domain (Gag_p24) gag protein p24 N-terminal domain p24 forms inner protein layer of the nucleocapsid. ELISA tests for p24 is the most commonly used method to demonstrate virus replication both in vivo and in vitro. Domain PF19317 Gag protein p24 C-terminal domain (Gag_p24_C) Gag protein p24 C-terminal domain p24 forms inner protein layer of the nucleocapsid. ELISA tests for p24 is the most commonly used method to demonstrate virus replication both in vivo and in vitro. Domain
Chains Polymer Molecular Function Biological Process Cellular Component Gag polyprotein Protein transport protein Sec24C
Chains Accession Name Type IPR000071 Immunodeficiency lentiviral matrix, N-terminal Domain IPR045345 Retroviral nucleocapsid Gag protein p24, C-terminal domain Domain IPR036875 Zinc finger, CCHC-type superfamily Homologous Superfamily IPR001878 Zinc finger, CCHC-type Domain IPR008919 Retrovirus capsid, N-terminal Homologous Superfamily IPR010999 Retroviral matrix protein Homologous Superfamily IPR012344 Matrix protein, lentiviral and alpha-retroviral, N-terminal Homologous Superfamily IPR014817 Gag protein p6 Domain IPR008916 Retrovirus capsid, C-terminal Homologous Superfamily IPR007123 Gelsolin-like domain Domain IPR029006 ADF-H/Gelsolin-like domain superfamily Homologous Superfamily IPR036465 von Willebrand factor A-like domain superfamily Homologous Superfamily IPR006896 Sec23/Sec24, trunk domain Domain IPR036180 Gelsolin-like domain superfamily Homologous Superfamily IPR036175 Sec23/Sec24 helical domain superfamily Homologous Superfamily IPR036174 Zinc finger, Sec23/Sec24-type superfamily Homologous Superfamily IPR006900 Sec23/Sec24, helical domain Domain IPR041742 Sec24-like, trunk domain Domain IPR006895 Zinc finger, Sec23/Sec24-type Domain IPR012990 Sec23/Sec24 beta-sandwich Domain
Chains Drug Target   Associated Disease Pharos :  P53992