Annotations: 8CGL

Cryo-EM structure of RNase J from Helicobacter pylori

External Resource: Annotation

Domain Annotation: ECOD Classification
Gene Ontology: Gene Product Annotation
InterPro: Protein Family Classification

Domain Annotation: ECOD Classification ECOD Database Homepage

Chains	Family Name	Domain Identifier	Architecture	Possible Homology	Homology	Topology	Family	Provenance Source (Version)
D	Ferritin	e8cglD1	A: alpha arrays	X: HTH	H: HTH	T: Three-helical HTH	F: Ferritin	ECOD (v295)
C	Ferritin	e8cglC1	A: alpha arrays	X: HTH	H: HTH	T: Three-helical HTH	F: Ferritin	ECOD (v295)
B	Ferritin	e8cglB1	A: alpha arrays	X: HTH	H: HTH	T: Three-helical HTH	F: Ferritin	ECOD (v295)
A	TSP_1	e8cglA01	A: alpha arrays	X: Rossmann-like	H: Rossmann-related	T: FAD/NAD(P)-binding domain	F: TSP_1	ECOD (v295)

Gene Ontology: Gene Product Annotation Gene Ontology Database Homepage

Chains	Polymer	Molecular Function	Biological Process	Cellular Component
A, B, C, D	Ribonuclease J	identical protein binding protein binding binding protein homodimerization activity protein dimerization activity endonuclease activity nuclease activity catalytic activity, acting on RNA RNA endonuclease activity catalytic activity, acting on a nucleic acid RNA nuclease activity catalytic activity 5'-3' RNA exonuclease activity 5'-3' exonuclease activity identical protein binding protein binding binding protein homodimerization activity protein dimerization activity endonuclease activity nuclease activity catalytic activity, acting on RNA RNA endonuclease activity catalytic activity, acting on a nucleic acid RNA nuclease activity catalytic activity 5'-3' RNA exonuclease activity 5'-3' exonuclease activity RNA exonuclease activity, producing 5'-phosphomonoesters RNA exonuclease activity hydrolase activity hydrolase activity, acting on ester bonds exonuclease activity cation binding transition metal ion binding zinc ion binding ion binding metal ion binding small molecule binding RNA binding nucleic acid binding	protein-containing complex organization protein homotetramerization cellular component organization cellular component biogenesis cellular component assembly protein complex oligomerization protein tetramerization protein-containing complex assembly protein homooligomerization cellular process cellular component organization or biogenesis ribonucleoprotein complex biogenesis RNA metabolic process primary metabolic process protein-containing complex organization protein homotetramerization cellular component organization cellular component biogenesis cellular component assembly protein complex oligomerization protein tetramerization protein-containing complex assembly protein homooligomerization cellular process cellular component organization or biogenesis ribonucleoprotein complex biogenesis RNA metabolic process primary metabolic process rRNA processing gene expression nucleobase-containing compound biosynthetic process macromolecule biosynthetic process nucleic acid metabolic process nucleobase-containing compound metabolic process RNA biosynthetic process ribosome biogenesis nucleic acid biosynthetic process biosynthetic process metabolic process macromolecule metabolic process RNA processing rRNA metabolic process regulation of growth regulation of biological process regulation of cellular component organization regulation of cellular process biological regulation growth regulation of cell growth cell growth mRNA processing mRNA metabolic process	cellular anatomical structure intracellular anatomical structure cytoplasm

InterPro: Protein Family Classification InterPro Database Homepage

Chains	Accession	Name	Type
A, B, C, D	IPR001279	Metallo-beta-lactamase	Domain
A, B, C, D	IPR001587	Ribonuclease J, conserved site	Conserved Site
A, B, C, D	IPR055132	Ribonuclease J, beta-CASP domain	Domain
A, B, C, D	IPR011108	Zn-dependent metallo-hydrolase, RNA specificity domain	Domain
A, B, C, D	IPR004613	Ribonuclease J	Family
A, B, C, D	IPR036866	Ribonuclease Z/Hydroxyacylglutathione hydrolase-like	Homologous Superfamily
A, B, C, D	IPR030854	Ribonuclease J, bacteria	Family
A, B, C, D	IPR041636	Ribonuclease J, C-terminal	Domain
A, B, C, D	IPR042173	Ribonuclease J, domain 2	Homologous Superfamily

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RCSB PDB Core Operations are funded by the U.S. National Science Foundation (DBI-2321666), the US Department of Energy (DE-SC0019749), and the National Cancer Institute, National Institute of Allergy and Infectious Diseases, and National Institute of General Medical Sciences of the National Institutes of Health under grant R01GM157729. RCSB PDB uses resources of the National Energy Research Scientific Computing Center (NERSC), a Department of Energy User Facility.

8CGL | pdb_00008cgl

Cryo-EM structure of RNase J from Helicobacter pylori

External Resource: Annotation

Domain Annotation: ECOD Classification ECOD Database Homepage

Gene Ontology: Gene Product Annotation Gene Ontology Database Homepage

InterPro: Protein Family Classification InterPro Database Homepage