Domain Annotation: SCOP2 Classification SCOP2 Database Homepage

ChainsTypeFamily Name Domain Identifier Family IdentifierProvenance Source (Version)
A [auth V]SCOP2B SuperfamilyRibosomal protein L25-like 8042538 3001161 SCOP2B (2022-06-29)
J [auth Q]SCOP2B SuperfamilyRibosomal protein L20 8096382 3000563 SCOP2B (2022-06-29)
K [auth R]SCOP2B Superfamilyl21p-like 8096354 3002005 SCOP2B (2022-06-29)
L [auth S]SCOP2B SuperfamilyRibosomal protein L22 8096336 3001078 SCOP2B (2022-06-29)
M [auth T]SCOP2B SuperfamilyRibosomal proteins S24e, L23 and L15e 8035415 3000210 SCOP2B (2022-06-29)
N [auth U]SCOP2B SuperfamilyTranslation proteins SH3-like KOW motif containing domain 8096358 3000334 SCOP2B (2022-06-29)
O [auth X]SCOP2B SuperfamilyL28p-like 8035424 3001966 SCOP2B (2022-06-29)
P [auth Y]SCOP2B SuperfamilyRibosomal protein L29 (L29p) 8096370 3000713 SCOP2B (2022-06-29)
Q [auth 0]SCOP2B SuperfamilyZn-binding ribosomal proteins 8096380 3001320 SCOP2B (2022-06-29)
S [auth O]SCOP2B SuperfamilyTranslational machinery components 8032969 3000571 SCOP2B (2022-06-29)
T [auth F]SCOP2B SuperfamilyRL5-like 8096352 3001709 SCOP2B (2022-06-29)
V [auth Z]SCOP2B SuperfamilyRibosomal protein L30p/L7e 8096372 3001378 SCOP2B (2022-06-29)
W [auth H]SCOP2B SuperfamilyL9 N-domain-like 8032960 3000338 SCOP2B (2022-06-29)
X [auth W]SCOP2B SuperfamilyRibosomal L27 protein-like 8096338 3000539 SCOP2B (2022-06-29)
C [auth D]SCOP2B SuperfamilyTranslational proteins 8032955 3000811 SCOP2B (2022-06-29)
D [auth E]SCOP2B SuperfamilyRibosomal protein L4 8096356 3001146 SCOP2B (2022-06-29)
E [auth J]SCOP2B SuperfamilyRibosomal protein L13 8096350 3001134 SCOP2B (2022-06-29)
F [auth K]SCOP2B Superfamily50S Ribosomal protein L14-like 8103358 3000433 SCOP2B (2022-06-29)
G [auth L]SCOP2B SuperfamilyRibosomal proteins L15p and L18e 8070553 3001045 SCOP2B (2022-06-29)
H [auth N]SCOP2B SuperfamilyProkaryotic ribosomal protein L17 8035409 3000995 SCOP2B (2022-06-29)
I [auth P]SCOP2B SuperfamilyTranslation proteins SH3-like KOW motif containing domain 8096364 3000334 SCOP2B (2022-06-29)

Domain Annotation: ECOD Classification ECOD Database Homepage

ChainsFamily NameDomain Identifier ArchitecturePossible HomologyHomologyTopologyFamilyProvenance Source (Version)
A [auth V]F_UNCLASSIFIEDe8c8zV1 A: beta barrelsX: Ribosomal protein L25-likeH: Ribosomal protein L25-like (From Topology)T: Ribosomal protein L25-likeF: F_UNCLASSIFIEDECOD (1.6)
J [auth Q]F_UNCLASSIFIEDe8c8zQ1 A: alpha arraysX: PABP domain-likeH: Ribosomal protein L20 (From Topology)T: Ribosomal protein L20F: F_UNCLASSIFIEDECOD (1.6)
K [auth R]F_UNCLASSIFIEDe8c8zR1 A: beta barrelsX: Ribosomal protein L21p (From Topology)H: Ribosomal protein L21p (From Topology)T: Ribosomal protein L21pF: F_UNCLASSIFIEDECOD (1.6)
L [auth S]F_UNCLASSIFIEDe8c8zS1 A: a+b two layersX: Enolase-N/ribosomal proteinH: Ribosomal protein L22 (From Topology)T: Ribosomal protein L22F: F_UNCLASSIFIEDECOD (1.6)
M [auth T]F_UNCLASSIFIEDe8c8zT1 A: a+b two layersX: Alpha-beta plaitsH: Ribosomal proteins S24e, L23 and L15e (From Topology)T: Ribosomal proteins S24e, L23 and L15eF: F_UNCLASSIFIEDECOD (1.6)
N [auth U]F_UNCLASSIFIEDe8c8zU1 A: beta barrelsX: SH3H: SH3T: SH3F: F_UNCLASSIFIEDECOD (1.6)
O [auth X]F_UNCLASSIFIEDe8c8zX1 A: few secondary structure elementsX: Ribosomal protein bL28-related (From Homology)H: Ribosomal protein bL28-relatedT: Ribosomal protein L28F: F_UNCLASSIFIEDECOD (1.6)
P [auth Y]F_UNCLASSIFIEDe8c8zY1 A: alpha bundlesX: Long alpha-hairpinH: Ribosomal protein L29 (L29p) (From Topology)T: Ribosomal protein L29 (L29p)F: F_UNCLASSIFIEDECOD (1.6)
Q [auth 0]F_UNCLASSIFIEDe8c8z01 A: few secondary structure elementsX: Rubredoxin-likeH: Rubredoxin-relatedT: Rubredoxin-relatedF: F_UNCLASSIFIEDECOD (1.6)
R [auth 2]F_UNCLASSIFIEDe8c8z21 A: extended segmentsX: 50S ribosomal protein L34 (From Topology)H: 50S ribosomal protein L34 (From Topology)T: 50S ribosomal protein L34F: F_UNCLASSIFIEDECOD (1.6)
S [auth O]F_UNCLASSIFIEDe8c8zO1 A: mixed a+b and a/bX: Ribonuclease H-likeH: Ribonuclease H-like (From Topology)T: Ribonuclease H-likeF: F_UNCLASSIFIEDECOD (1.6)
T [auth F]F_UNCLASSIFIEDe8c8zF1 A: a+b two layersX: Ribosomal protein L5 (From Topology)H: Ribosomal protein L5 (From Topology)T: Ribosomal protein L5F: F_UNCLASSIFIEDECOD (1.6)
V [auth Z]F_UNCLASSIFIEDe8c8zZ1 A: a+b two layersX: Ribosomal protein L30p/L7e (From Topology)H: Ribosomal protein L30p/L7e (From Topology)T: Ribosomal protein L30p/L7eF: F_UNCLASSIFIEDECOD (1.6)
W [auth H]F_UNCLASSIFIEDe8c8zH1 A: a+b two layersX: L9 N-domain-likeH: L9 N-domain-like (From Topology)T: L9 N-domain-likeF: F_UNCLASSIFIEDECOD (1.6)
X [auth W]F_UNCLASSIFIEDe8c8zW1 A: a+b complex topologyX: alpha/beta-Hammerhead/Barrel-sandwich hybridH: alpha/beta-Hammerhead/Barrel-sandwich hybridT: Ribosomal L27 proteinF: F_UNCLASSIFIEDECOD (1.6)
C [auth D]F_UNCLASSIFIEDe8c8zD1 A: beta barrelsX: cradle loop barrelH: RIFT-relatedT: Alanine racemase-CF: F_UNCLASSIFIEDECOD (1.6)
D [auth E]F_UNCLASSIFIEDe8c8zE1 A: a/b three-layered sandwichesX: Ribosomal protein L4 (From Topology)H: Ribosomal protein L4 (From Topology)T: Ribosomal protein L4F: F_UNCLASSIFIEDECOD (1.6)
E [auth J]F_UNCLASSIFIEDe8c8zJ1 A: a/b three-layered sandwichesX: Ribosomal protein L13/L15p/L18e/L32eH: Ribosomal protein L13 and L16-A (From Topology)T: Ribosomal protein L13 and L16-AF: F_UNCLASSIFIEDECOD (1.6)
F [auth K]F_UNCLASSIFIEDe8c8zK1 A: beta barrelsX: Ribosomal protein L14-likeH: Ribosomal protein L14-related (From Topology)T: Ribosomal protein L14-relatedF: F_UNCLASSIFIEDECOD (1.6)
G [auth L]F_UNCLASSIFIEDe8c8zL1 A: a/b three-layered sandwichesX: Ribosomal protein L13/L15p/L18e/L32eH: Ribosomal proteins L15p and L18e (From Topology)T: Ribosomal proteins L15p and L18eF: F_UNCLASSIFIEDECOD (1.6)
H [auth N]F_UNCLASSIFIEDe8c8zN1 A: a+b two layersX: Enolase-N/ribosomal proteinH: Prokaryotic ribosomal protein L17 (From Topology)T: Prokaryotic ribosomal protein L17F: F_UNCLASSIFIEDECOD (1.6)
I [auth P]F_UNCLASSIFIEDe8c8zP1 A: beta barrelsX: SH3H: SH3T: SH3F: F_UNCLASSIFIEDECOD (1.6)

Protein Family Annotation Pfam Database Homepage

ChainsAccessionNameDescriptionCommentsSource
A [auth V]PF01386Ribosomal L25p family (Ribosomal_L25p)Ribosomal L25p familyRibosomal protein L25 is an RNA binding protein, that binds 5S rRNA. This family includes Ctc from B. subtilis Swiss:P14194, which is induced by stress.Domain
J [auth Q]PF00453Ribosomal protein L20 (Ribosomal_L20)Ribosomal protein L20- Family
K [auth R]PF00829Ribosomal prokaryotic L21 protein (Ribosomal_L21p)Ribosomal prokaryotic L21 protein- Family
L [auth S]PF00237Ribosomal protein L22p/L17e (Ribosomal_L22)Ribosomal protein L22p/L17eThis family includes L22 from prokaryotes and chloroplasts and L17 from eukaryotes.Domain
M [auth T]PF00276Ribosomal protein L23 (Ribosomal_L23)Ribosomal protein L23- Family
N [auth U]PF17136Ribosomal proteins 50S L24/mitochondrial 39S L24 (ribosomal_L24)Ribosomal proteins 50S L24/mitochondrial 39S L24- Family
N [auth U]PF00467KOW motif (KOW)KOW motif- Family
O [auth X]PF00830Ribosomal L28 family (Ribosomal_L28)Ribosomal L28 family- Family
P [auth Y]PF00831Ribosomal L29 protein (Ribosomal_L29)Ribosomal L29 protein- Family
Q [auth 0]PF01783Ribosomal L32p protein family (Ribosomal_L32p)Ribosomal L32p protein family- Family
T [auth F]PF00281Ribosomal protein L5 (Ribosomal_L5)Ribosomal protein L5- Domain
T [auth F]PF00673ribosomal L5P family C-terminus (Ribosomal_L5_C)ribosomal L5P family C-terminusThis region is found associated with Pfam:PF00281.Domain
V [auth Z]PF00327Ribosomal protein L30p/L7e (Ribosomal_L30)Ribosomal protein L30p/L7eThis family includes prokaryotic L30 and eukaryotic L7.Domain
W [auth H]PF01281Ribosomal protein L9, N-terminal domain (Ribosomal_L9_N)Ribosomal protein L9, N-terminal domain- Domain
C [auth D]PF00297Ribosomal protein L3 (Ribosomal_L3)Ribosomal protein L3- Family
D [auth E]PF00573Ribosomal protein L4/L1 family (Ribosomal_L4)Ribosomal protein L4/L1 family- Family
E [auth J]PF00572Ribosomal protein L13 (Ribosomal_L13)Ribosomal protein L13- Family
F [auth K]PF00238Ribosomal protein L14p/L23e (Ribosomal_L14)Ribosomal protein L14p/L23e- Domain
G [auth L]PF00828Ribosomal proteins 50S-L15, 50S-L18e, 60S-L27A (Ribosomal_L27A)Ribosomal proteins 50S-L15, 50S-L18e, 60S-L27A- Family
H [auth N]PF01196Ribosomal protein L17 (Ribosomal_L17)Ribosomal protein L17- Family
I [auth P]PF01245Ribosomal protein L19 (Ribosomal_L19)Ribosomal protein L19- Family

Gene Ontology: Gene Product Annotation Gene Ontology Database Homepage

ChainsPolymerMolecular FunctionBiological ProcessCellular Component
A [auth V]50S ribosomal protein L25
J [auth Q]50S ribosomal protein L20
K [auth R]50S ribosomal protein L21
L [auth S]50S ribosomal protein L22
M [auth T]50S ribosomal protein L23
N [auth U]50S ribosomal protein L24
O [auth X]50S ribosomal protein L28
P [auth Y]50S ribosomal protein L29
Q [auth 0]50S ribosomal protein L32
R [auth 2]50S ribosomal protein L34
S [auth O]50S ribosomal protein L18
B [auth A]23S rRNA---
T [auth F]50S ribosomal protein L5
U [auth B]5S rRNA---
V [auth Z]50S ribosomal protein L30
W [auth H]50S ribosomal protein L9
X [auth W]50S ribosomal protein L27
C [auth D]50S ribosomal protein L3
D [auth E]50S ribosomal protein L4
E [auth J]50S ribosomal protein L13
F [auth K]50S ribosomal protein L14
G [auth L]50S ribosomal protein L15
H [auth N]50S ribosomal protein L17
I [auth P]50S ribosomal protein L19

InterPro: Protein Family Classification InterPro Database Homepage

ChainsAccessionNameType
A [auth V]IPR020055Ribosomal protein bL25, short-formFamily
A [auth V]IPR029751Large ribosomal subunit protein bL25, L25 domainDomain
A [auth V]IPR020056Large ribosomal subunit protein bL25/Gln-tRNA synthetase, N-terminalHomologous Superfamily
A [auth V]IPR050070Bacterial ribosomal protein bL25Family
A [auth V]IPR011035Large ribosomal subunit protein bL25/Gln-tRNA synthetase, anti-codon-binding domain superfamilyHomologous Superfamily
J [auth Q]IPR049946Large ribosomal subunit protein bL20, conserved siteConserved Site
J [auth Q]IPR035566Ribosomal protein bL20, C-terminalHomologous Superfamily
J [auth Q]IPR005813Large ribosomal subunit protein bL20Family
K [auth R]IPR028909Large ribosomal subunit protein bL21-likeFamily
K [auth R]IPR001787Large ribosomal subunit protein bL21Family
K [auth R]IPR036164Large ribosomal subunit protein bL21-like superfamilyHomologous Superfamily
K [auth R]IPR018258Large ribosomal subunit protein bL21, conserved siteConserved Site
L [auth S]IPR047867Large ribosomal subunit protein uL22, bacterial/organelle-typeFamily
L [auth S]IPR036394Ribosomal protein uL22 superfamilyHomologous Superfamily
L [auth S]IPR001063Large ribosomal subunit protein uL22Family
L [auth S]IPR018260Large ribosomal subunit protein uL22, conserved siteConserved Site
L [auth S]IPR005727Large ribosomal subunit protein uL22, bacterial/chloroplast-typeFamily
M [auth T]IPR012678Ribosomal protein uL23/eL15/eS24 core domain superfamilyHomologous Superfamily
M [auth T]IPR012677Nucleotide-binding alpha-beta plait domain superfamilyHomologous Superfamily
M [auth T]IPR001014Large ribosomal subunit protein uL23, conserved siteConserved Site
M [auth T]IPR013025Large ribosomal subunit protein uL23-likeFamily
N [auth U]IPR014722Large ribosomal subunit protein uL2, domain 2Homologous Superfamily
N [auth U]IPR008991Translation protein SH3-like domain superfamilyHomologous Superfamily
N [auth U]IPR003256Large ribosomal subunit protein uL24Family
N [auth U]IPR041988Large ribosomal subunit protein uL24, KOW domainDomain
N [auth U]IPR005824KOWDomain
N [auth U]IPR005825Large ribosomal subunit protein uL24, conserved siteConserved Site
O [auth X]IPR001383Large ribosomal subunit protein bL28, bacterial-typeFamily
O [auth X]IPR037147Large ribosomal subunit protein bL28 superfamilyHomologous Superfamily
O [auth X]IPR026569Large ribosomal subunit protein bL28Family
O [auth X]IPR034704Large ribosomal subunit protein bL28/bL31-like superfamilyHomologous Superfamily
P [auth Y]IPR050063Universal ribosomal protein uL29Family
P [auth Y]IPR001854Large ribosomal subunit protein uL29Family
P [auth Y]IPR036049Large ribosomal subunit protein uL29 superfamilyHomologous Superfamily
P [auth Y]IPR018254Large ribosomal subunit protein uL29, conserved siteConserved Site
Q [auth 0]IPR002677Large ribosomal subunit protein bL32Family
Q [auth 0]IPR011332Zinc-binding ribosomal proteinHomologous Superfamily
Q [auth 0]IPR044957Large ribosomal subunit protein bL32, bacterial typeFamily
R [auth 2]IPR020939Large ribosomal subunit protein bL34, conserved siteConserved Site
R [auth 2]IPR000271Large ribosomal subunit protein bL34Family
S [auth O]IPR005484Large ribosomal subunit protein uL18Family
S [auth O]IPR004389Large ribosomal subunit protein uL18, bacterial-typeFamily
T [auth F]IPR020929Large ribosomal subunit protein uL5, conserved siteConserved Site
T [auth F]IPR022803Large ribosomal subunit protein uL5 domain superfamilyHomologous Superfamily
T [auth F]IPR031309Large ribosomal subunit protein uL5, C-terminalDomain
T [auth F]IPR031310Large ribosomal subunit protein uL5, N-terminalDomain
T [auth F]IPR020930Large ribosomal subunit protein uL5, bacterial-typeFamily
T [auth F]IPR002132Large ribosomal subunit protein uL5Family
V [auth Z]IPR036919Large ribosomal subunit protein uL30, ferredoxin-like fold domain superfamilyHomologous Superfamily
V [auth Z]IPR005996Large ribosomal subunit protein uL30, bacterial-typeFamily
V [auth Z]IPR016082Large ribosomal subunit protein uL30-like, ferredoxin-like fold domainDomain
V [auth Z]IPR018038Large ribosomal subunit protein uL30, conserved siteConserved Site
W [auth H]IPR036935Large ribosomal subunit protein bL9, N-terminal domain superfamilyHomologous Superfamily
W [auth H]IPR020069Large ribosomal subunit protein bL9, C-terminalDomain
W [auth H]IPR020070Large ribosomal subunit protein bL9, N-terminalDomain
W [auth H]IPR009027Large ribosomal subunit protein bL9/RNase H1, N-terminalHomologous Superfamily
W [auth H]IPR020594Large ribosomal subunit protein bL9, bacteria/chloroplastFamily
W [auth H]IPR036791Large ribosomal subunit protein bL9, C-terminal domain superfamilyHomologous Superfamily
W [auth H]IPR000244Large ribosomal subunit protein bL9Family
X [auth W]IPR001684Large ribosomal subunit protein bL27Family
X [auth W]IPR018261Large ribosomal subunit protein bL27, conserved siteConserved Site
C [auth D]IPR019926Large ribosomal subunit protein uL3, conserved siteConserved Site
C [auth D]IPR019927Large ribosomal subunit protein uL3, bacterial/organelle-typeFamily
C [auth D]IPR009000Translation protein, beta-barrel domain superfamilyHomologous Superfamily
C [auth D]IPR000597Large ribosomal subunit protein uL3Family
D [auth E]IPR013005Large ribosomal subunit protein uL4-likeFamily
D [auth E]IPR002136Large ribosomal subunit protein uL4Family
D [auth E]IPR023574Large ribosomal subunit protein uL4 domain superfamilyHomologous Superfamily
E [auth J]IPR023563Large ribosomal subunit protein uL13, conserved siteConserved Site
E [auth J]IPR005822Large ribosomal subunit protein uL13Family
E [auth J]IPR036899Large ribosomal subunit protein uL13 superfamilyHomologous Superfamily
E [auth J]IPR005823Large ribosomal subunit protein uL13, bacterial-typeFamily
F [auth K]IPR005745Large ribosomal subunit protein uL14, bacterial-typeFamily
F [auth K]IPR036853Large ribosomal subunit protein uL14 superfamilyHomologous Superfamily
F [auth K]IPR000218Large ribosomal subunit protein uL14Family
F [auth K]IPR019972Large ribosomal subunit protein uL14, conserved siteConserved Site
G [auth L]IPR005749Large ribosomal subunit protein uL15, bacterial-typeFamily
G [auth L]IPR021131Large ribosomal subunit protein uL15/eL18Domain
G [auth L]IPR030878Large ribosomal subunit protein uL15Family
G [auth L]IPR001196Large ribosomal subunit protein uL15, conserved siteConserved Site
G [auth L]IPR036227Large ribosomal subunit protein uL15/eL18 superfamilyHomologous Superfamily
H [auth N]IPR036373Large ribosomal subunit protein bL17 superfamilyHomologous Superfamily
H [auth N]IPR047859Large ribosomal subunit protein bL17, conserved siteConserved Site
H [auth N]IPR000456Large ribosomal subunit protein bL17Family
I [auth P]IPR001857Large ribosomal subunit protein bL19Family
I [auth P]IPR038657Large ribosomal subunit protein bL19 superfamilyHomologous Superfamily
I [auth P]IPR018257Large ribosomal subunit protein bL19, conserved siteConserved Site
I [auth P]IPR008991Translation protein SH3-like domain superfamilyHomologous Superfamily