Domain Annotation: SCOP2 Classification SCOP2 Database Homepage

ChainsTypeFamily Name Domain Identifier Family IdentifierProvenance Source (Version)
B [auth C]SCOP2B SuperfamilyMHC antigen-recognition domain8041433 3000521 SCOP2B (2021-05-27)

Domain Annotation: ECOD Classification ECOD Database Homepage

ChainsFamily NameDomain Identifier ArchitecturePossible HomologyHomologyTopologyFamilyProvenance Source (Version)
B [auth C]PF16497e8c44C1 A: a+b two layersX: MHC antigen-recognition domain (From Topology)H: MHC antigen-recognition domain (From Topology)T: MHC antigen-recognition domainF: PF16497ECOD (1.6)

Protein Family Annotation Pfam Database Homepage

ChainsAccessionNameDescriptionCommentsSource
PF03011PFEMP1 DBL domain (PFEMP)PFEMP1 DBL domainPfEMP1 (Plasmodium falciparum erythrocyte membrane protein) has been identified as the rosetting ligand of the malaria parasite P. falciparum [1,2]. Rosetting is the adhesion of infected erythrocytes with uninfected erythrocytes in the vasculature ...PfEMP1 (Plasmodium falciparum erythrocyte membrane protein) has been identified as the rosetting ligand of the malaria parasite P. falciparum [1,2]. Rosetting is the adhesion of infected erythrocytes with uninfected erythrocytes in the vasculature of the infected organ, and is associated with severe malaria. PfEMP1 interacts with Complement Receptor One on uninfected erythrocytes to form rosettes [2]. The extreme variation within these proteins and the grouping of var genes implies that var gene recombination preferentially occurs within var gene groups. These groups reflect a functional diversification that has evolved to cope with the varying conditions of transmission and host immune response met by the parasite [3]. A recombination hotspot was uncovered between Duffy-binding-like (DBL) subdomains [4]. Solution of the crystal structure of the N-terminal and first DBL region of PfEMP1 from the VarO variant of the PfEMP1 protein is found to be directly implicated in rosetting as the heparin-binding site [5].
Domain
PF21807PfEMP1 protein, CIDRalpha1 domain (PfEMP1_CIDRalpha1_dom)PfEMP1 protein, CIDRalpha1 domainThis domain is found in the surface protein PfEMP1 from Plasmodium falciparum. PfEMP1 is essential for the virulence of this organism. This protein interacts with the endothelial protein C receptor (EPCR) through its cysteine-rich interdomain region ...This domain is found in the surface protein PfEMP1 from Plasmodium falciparum. PfEMP1 is essential for the virulence of this organism. This protein interacts with the endothelial protein C receptor (EPCR) through its cysteine-rich interdomain region (CIDRalpha1, this entry). This domain show binding surfaces that are conserved in shape and bonding potential, despite dramatic sequence diversity. The domain is built around a long three-helical core bundle, with a four-stranded beta-sheet on one side and two alpha-helices on the opposite side [1,2].
Domain
PF05424Duffy binding domain (Duffy_binding)Duffy binding domain- Family
B [auth C]PF16497MHC-I family domain (MHC_I_3)MHC-I family domain- Domain

Gene Ontology: Gene Product Annotation Gene Ontology Database Homepage

ChainsPolymerMolecular FunctionBiological ProcessCellular Component
PfEMP1 -
B [auth C]Endothelial protein C receptor