8C34
Aerobic light exposed 1.8 Angstrom crystal structure of cobalamin binding domain belonging to a light-dependent transcription regulator TtCarH
Domain Annotation: ECOD Classification ECOD Database Homepage
Chains | Family Name | Domain Identifier | Architecture | Possible Homology | Homology | Topology | Family | Provenance Source (Version) |
---|---|---|---|---|---|---|---|---|
A | PF02607 | e8c34A2 | A: alpha arrays | X: Methionine synthase domain-like (From Topology) | H: Methionine synthase domain-like (From Topology) | T: Methionine synthase domain-like | F: PF02607 | ECOD (1.6) |
A | F_UNCLASSIFIED | e8c34A1 | A: a/b three-layered sandwiches | X: Flavodoxin-like | H: Class I glutamine amidotransferase-like | T: CheY-like | F: F_UNCLASSIFIED | ECOD (1.6) |
B | PF02607 | e8c34B2 | A: alpha arrays | X: Methionine synthase domain-like (From Topology) | H: Methionine synthase domain-like (From Topology) | T: Methionine synthase domain-like | F: PF02607 | ECOD (1.6) |
B | F_UNCLASSIFIED | e8c34B1 | A: a/b three-layered sandwiches | X: Flavodoxin-like | H: Class I glutamine amidotransferase-like | T: CheY-like | F: F_UNCLASSIFIED | ECOD (1.6) |
C | PF02607 | e8c34C2 | A: alpha arrays | X: Methionine synthase domain-like (From Topology) | H: Methionine synthase domain-like (From Topology) | T: Methionine synthase domain-like | F: PF02607 | ECOD (1.6) |
C | F_UNCLASSIFIED | e8c34C1 | A: a/b three-layered sandwiches | X: Flavodoxin-like | H: Class I glutamine amidotransferase-like | T: CheY-like | F: F_UNCLASSIFIED | ECOD (1.6) |
D | PF02607 | e8c34D1 | A: alpha arrays | X: Methionine synthase domain-like (From Topology) | H: Methionine synthase domain-like (From Topology) | T: Methionine synthase domain-like | F: PF02607 | ECOD (1.6) |
D | F_UNCLASSIFIED | e8c34D2 | A: a/b three-layered sandwiches | X: Flavodoxin-like | H: Class I glutamine amidotransferase-like | T: CheY-like | F: F_UNCLASSIFIED | ECOD (1.6) |
Protein Family Annotation Pfam Database Homepage
Chains | Accession | Name | Description | Comments | Source |
---|---|---|---|---|---|
PF02607 | B12 binding domain (B12-binding_2) | B12 binding domain | This B12 binding domain is found in methionine synthase EC:2.1.1.13 Swiss:Q99707, and other shorter proteins that bind to B12. This domain is always found to the N-terminus of Pfam:PF02310. The structure of this domain is known [1], it is a 4 helix ... | Domain |
Gene Ontology: Gene Product Annotation Gene Ontology Database Homepage
InterPro: Protein Family Classification InterPro Database Homepage
Chains | Accession | Name | Type |
---|---|---|---|
IPR003759 | Cobalamin (vitamin B12)-binding module, cap domain | Domain | |
IPR009061 | Putative DNA-binding domain superfamily | Homologous Superfamily | |
IPR036724 | Cobalamin-binding domain superfamily | Homologous Superfamily | |
IPR047057 | MerR transcriptional regulator | Family | |
IPR006158 | Cobalamin (vitamin B12)-binding domain | Domain | |
IPR036594 | Methionine synthase domain | Homologous Superfamily | |
IPR000551 | MerR-type HTH domain | Domain |