Annotations: 8BVJ

Domain Annotation: ECOD Classification ECOD Database Homepage

Chains	Family Name	Domain Identifier	Architecture	Possible Homology	Homology	Topology	Family	Provenance Source (Version)
C [auth J]	LSM	e8bvjJ1	A: beta barrels	X: SH3	H: SH3	T: SH3	F: LSM	ECOD (1.6)
F [auth P]	LSM	e8bvjP1	A: beta barrels	X: SH3	H: SH3	T: SH3	F: LSM	ECOD (1.6)
M [auth K]	LSM	e8bvjK1	A: beta barrels	X: SH3	H: SH3	T: SH3	F: LSM	ECOD (1.6)
A [auth R]	LSM	e8bvjR1	A: beta barrels	X: SH3	H: SH3	T: SH3	F: LSM	ECOD (1.6)
B [auth T]	LSM	e8bvjT1	A: beta barrels	X: SH3	H: SH3	T: SH3	F: LSM	ECOD (1.6)
D [auth L]	LSM	e8bvjL1	A: beta barrels	X: SH3	H: SH3	T: SH3	F: LSM	ECOD (1.6)
E [auth N]	LSM	e8bvjN1	A: beta barrels	X: SH3	H: SH3	T: SH3	F: LSM	ECOD (1.6)
G [auth X]	LSM	e8bvjX1	A: beta barrels	X: SH3	H: SH3	T: SH3	F: LSM	ECOD (1.6)
H [auth Y]	LSM	e8bvjY1	A: beta barrels	X: SH3	H: SH3	T: SH3	F: LSM	ECOD (1.6)
I [auth S]	LSM	e8bvjS1	A: beta barrels	X: SH3	H: SH3	T: SH3	F: LSM	ECOD (1.6)
J [auth U]	LSM	e8bvjU1	A: beta barrels	X: SH3	H: SH3	T: SH3	F: LSM	ECOD (1.6)
K [auth V]	LSM	e8bvjV1	A: beta barrels	X: SH3	H: SH3	T: SH3	F: LSM	ECOD (1.6)
L [auth W]	LSM	e8bvjW1	A: beta barrels	X: SH3	H: SH3	T: SH3	F: LSM	ECOD (1.6)
N [auth M]	LSM	e8bvjM1	A: beta barrels	X: SH3	H: SH3	T: SH3	F: LSM	ECOD (1.6)
O [auth D]	LSM	e8bvjD1	A: beta barrels	X: SH3	H: SH3	T: SH3	F: LSM	ECOD (1.6)
P [auth E]	LSM	e8bvjE1	A: beta barrels	X: SH3	H: SH3	T: SH3	F: LSM	ECOD (1.6)
Q [auth F]	LSM	e8bvjF1	A: beta barrels	X: SH3	H: SH3	T: SH3	F: LSM	ECOD (1.6)
R [auth I]	LSM	e8bvjI1	A: beta barrels	X: SH3	H: SH3	T: SH3	F: LSM	ECOD (1.6)
S [auth Q]	Exo_endo_phos	e8bvjQ1	A: a+b four layers	X: Carbon-nitrogen hydrolase-like	H: DNase I-like (From Topology)	T: DNase I-like	F: Exo_endo_phos	ECOD (1.6)
U [auth G]	Exo_endo_phos	e8bvjG1	A: a+b four layers	X: Carbon-nitrogen hydrolase-like	H: DNase I-like (From Topology)	T: DNase I-like	F: Exo_endo_phos	ECOD (1.6)
V [auth C]	Exo_endo_phos	e8bvjC1	A: a+b four layers	X: Carbon-nitrogen hydrolase-like	H: DNase I-like (From Topology)	T: DNase I-like	F: Exo_endo_phos	ECOD (1.6)
W [auth A]	Exo_endo_phos	e8bvjA1	A: a+b four layers	X: Carbon-nitrogen hydrolase-like	H: DNase I-like (From Topology)	T: DNase I-like	F: Exo_endo_phos	ECOD (1.6)

Protein Family Annotation Pfam Database Homepage

Chains	Accession	Name	Description	Comments	Source
A [auth R], B [auth T], C [auth J], D [auth L], E [auth N], A [auth R], B [auth T], C [auth J], D [auth L], E [auth N], F [auth P], G [auth X], H [auth Y], I [auth S], J [auth U], K [auth V], L [auth W], M [auth K], N [auth M], O [auth D], P [auth E], Q [auth F], R [auth I]	PF17209	Hfq protein (Hfq)	Hfq protein	-	Domain
S [auth Q], U [auth G], V [auth C], W [auth A]	PF03372	Endonuclease/Exonuclease/phosphatase family (Exo_endo_phos)	Endonuclease/Exonuclease/phosphatase family	This large family of proteins includes magnesium dependent endonucleases and a large number of phosphatases involved in intracellular signalling [1]. This family includes: AP endonuclease proteins EC:4.2.99.18 e.g Swiss:P27695, DNase I proteins EC:3. ...	This large family of proteins includes magnesium dependent endonucleases and a large number of phosphatases involved in intracellular signalling [1]. This family includes: AP endonuclease proteins EC:4.2.99.18 e.g Swiss:P27695, DNase I proteins EC:3.1.21.1 e.g. Swiss:P24855, Synaptojanin an inositol-1,4,5-trisphosphate phosphatase EC:3.1.3.56 Swiss:O43426, Sphingomyelinase EC:3.1.4.12 Swiss:P11889 and Nocturnin Swiss:O35710.	Domain

Gene Ontology: Gene Product Annotation Gene Ontology Database Homepage

Chains	Polymer	Molecular Function	Biological Process	Cellular Component
A [auth R], B [auth T], C [auth J], D [auth L], E [auth N], A [auth R], B [auth T], C [auth J], D [auth L], E [auth N], F [auth P], G [auth X], H [auth Y], I [auth S], J [auth U], K [auth V], L [auth W], M [auth K], N [auth M], O [auth D], P [auth E], Q [auth F], R [auth I]	RNA-binding protein Hfq	RNA binding binding organic cyclic compound binding nucleic acid binding	regulation of cellular process cellular biosynthetic process RNA metabolic process regulation of primary metabolic process nucleobase-containing compound metabolic process RNA biosynthetic process nucleic acid biosynthetic process DNA-templated transcription regulation of RNA metabolic process regulation of nucleobase-containing compound metabolic process regulation of RNA biosynthetic process regulation of biosynthetic process regulation of biological process cellular metabolic process regulation of cellular process cellular biosynthetic process RNA metabolic process regulation of primary metabolic process nucleobase-containing compound metabolic process RNA biosynthetic process nucleic acid biosynthetic process DNA-templated transcription regulation of RNA metabolic process regulation of nucleobase-containing compound metabolic process regulation of RNA biosynthetic process regulation of biosynthetic process regulation of biological process cellular metabolic process biological regulation primary metabolic process regulation of cellular metabolic process regulation of macromolecule metabolic process nucleobase-containing compound biosynthetic process gene expression macromolecule biosynthetic process nucleic acid metabolic process regulation of cellular biosynthetic process regulation of gene expression biosynthetic process metabolic process regulation of macromolecule biosynthetic process cellular process regulation of DNA-templated transcription macromolecule metabolic process regulation of metabolic process	-
S [auth Q], U [auth G], V [auth C], W [auth A]	Catabolite repression control protein	double-stranded DNA 3'-5' DNA exonuclease activity DNA exonuclease activity catalytic activity, acting on a nucleic acid 3'-5' exonuclease activity double-stranded DNA exodeoxyribonuclease activity hydrolase activity DNA exonuclease activity, producing 5'-phosphomonoesters DNA nuclease activity exonuclease activity, active with either ribo- or deoxyribonucleic acids and producing 5'-phosphomonoesters catalytic activity, acting on DNA nuclease activity hydrolase activity, acting on ester bonds 3'-5'-DNA exonuclease activity catalytic activity double-stranded DNA 3'-5' DNA exonuclease activity DNA exonuclease activity catalytic activity, acting on a nucleic acid 3'-5' exonuclease activity double-stranded DNA exodeoxyribonuclease activity hydrolase activity DNA exonuclease activity, producing 5'-phosphomonoesters DNA nuclease activity exonuclease activity, active with either ribo- or deoxyribonucleic acids and producing 5'-phosphomonoesters catalytic activity, acting on DNA nuclease activity hydrolase activity, acting on ester bonds 3'-5'-DNA exonuclease activity catalytic activity exonuclease activity cation binding ion binding binding metal ion binding small molecule binding	cellular response to stimulus response to stimulus primary metabolic process DNA metabolic process nucleic acid metabolic process nucleobase-containing compound metabolic process cellular response to stress DNA damage response response to stress metabolic process cellular process macromolecule metabolic process DNA repair	-
T [auth B]	estA mRNA	-	-	-

InterPro: Protein Family Classification InterPro Database Homepage

Chains	Accession	Name	Type
A [auth R], B [auth T], C [auth J], D [auth L], E [auth N], A [auth R], B [auth T], C [auth J], D [auth L], E [auth N], F [auth P], G [auth X], H [auth Y], I [auth S], J [auth U], K [auth V], L [auth W], M [auth K], N [auth M], O [auth D], P [auth E], Q [auth F], R [auth I]	IPR010920	LSM domain superfamily	Homologous Superfamily
A [auth R], B [auth T], C [auth J], D [auth L], E [auth N], A [auth R], B [auth T], C [auth J], D [auth L], E [auth N], F [auth P], G [auth X], H [auth Y], I [auth S], J [auth U], K [auth V], L [auth W], M [auth K], N [auth M], O [auth D], P [auth E], Q [auth F], R [auth I]	IPR005001	RNA-binding protein Hfq	Family
A [auth R], B [auth T], C [auth J], D [auth L], E [auth N], A [auth R], B [auth T], C [auth J], D [auth L], E [auth N], F [auth P], G [auth X], H [auth Y], I [auth S], J [auth U], K [auth V], L [auth W], M [auth K], N [auth M], O [auth D], P [auth E], Q [auth F], R [auth I]	IPR047575	Sm domain	Domain
S [auth Q], U [auth G], V [auth C], W [auth A]	IPR005135	Endonuclease/exonuclease/phosphatase	Domain
S [auth Q], U [auth G], V [auth C], W [auth A]	IPR037493	Exodeoxyribonuclease III-like	Family
S [auth Q], U [auth G], V [auth C], W [auth A]	IPR004808	AP endonuclease 1	Family
S [auth Q], U [auth G], V [auth C], W [auth A]	IPR036691	Endonuclease/exonuclease/phosphatase superfamily	Homologous Superfamily