8BUA
Structure of DDB1 bound to 919278-engaged CDK12-cyclin K
Domain Annotation: SCOP2 Classification SCOP2 Database Homepage
Chains | Type | Family Name | Domain Identifier | Family Identifier | Provenance Source (Version) |
---|---|---|---|---|---|
A | SCOP2B Superfamily | WD40 repeat-like | 8052530 | 3001694 | SCOP2B (2022-06-29) |
A | SCOP2B Superfamily | WD40 repeat-like | 8052530 | 3001694 | SCOP2B (2022-06-29) |
A | SCOP2B Superfamily | WD40 repeat-like | 8051194 | 3001694 | SCOP2B (2022-06-29) |
D | SCOP2B Superfamily | WD40 repeat-like | 8052530 | 3001694 | SCOP2B (2022-06-29) |
D | SCOP2B Superfamily | WD40 repeat-like | 8051194 | 3001694 | SCOP2B (2022-06-29) |
D | SCOP2B Superfamily | WD40 repeat-like | 8052530 | 3001694 | SCOP2B (2022-06-29) |
G | SCOP2B Superfamily | WD40 repeat-like | 8051194 | 3001694 | SCOP2B (2022-06-29) |
G | SCOP2B Superfamily | WD40 repeat-like | 8052530 | 3001694 | SCOP2B (2022-06-29) |
G | SCOP2B Superfamily | WD40 repeat-like | 8052530 | 3001694 | SCOP2B (2022-06-29) |
H | SCOP2B Superfamily | Protein kinase-like (PK-like) | 8062460 | 3000066 | SCOP2B (2022-06-29) |
B | SCOP2B Superfamily | Protein kinase-like (PK-like) | 8062460 | 3000066 | SCOP2B (2022-06-29) |
E | SCOP2B Superfamily | Protein kinase-like (PK-like) | 8062460 | 3000066 | SCOP2B (2022-06-29) |
C | SCOP2B Superfamily | Cyclin-like | 8034370 | 3000768 | SCOP2B (2022-06-29) |
C | SCOP2B Superfamily | Cyclin-like | 8034372 | 3000768 | SCOP2B (2022-06-29) |
I | SCOP2B Superfamily | Cyclin-like | 8034372 | 3000768 | SCOP2B (2022-06-29) |
I | SCOP2B Superfamily | Cyclin-like | 8034370 | 3000768 | SCOP2B (2022-06-29) |
F | SCOP2B Superfamily | Cyclin-like | 8034370 | 3000768 | SCOP2B (2022-06-29) |
F | SCOP2B Superfamily | Cyclin-like | 8034372 | 3000768 | SCOP2B (2022-06-29) |
Domain Annotation: ECOD Classification ECOD Database Homepage
Chains | Family Name | Domain Identifier | Architecture | Possible Homology | Homology | Topology | Family | Provenance Source (Version) |
---|---|---|---|---|---|---|---|---|
A | PF03178,PF10433 | e8buaA2 | A: beta duplicates or obligate multimers | X: beta-propeller-like | H: beta-propeller | T: 7-bladed | F: PF03178,PF10433 | ECOD (1.6) |
A | PF10433 | e8buaA3 | A: beta duplicates or obligate multimers | X: beta-propeller-like | H: beta-propeller | T: 7-bladed | F: PF10433 | ECOD (1.6) |
A | PF03178 | e8buaA1 | A: alpha arrays | X: HTH | H: HTH | T: tri-helical | F: PF03178 | ECOD (1.6) |
D | PF03178,PF10433 | e8buaD1 | A: beta duplicates or obligate multimers | X: beta-propeller-like | H: beta-propeller | T: 7-bladed | F: PF03178,PF10433 | ECOD (1.6) |
D | PF10433 | e8buaD3 | A: beta duplicates or obligate multimers | X: beta-propeller-like | H: beta-propeller | T: 7-bladed | F: PF10433 | ECOD (1.6) |
D | PF03178 | e8buaD2 | A: alpha arrays | X: HTH | H: HTH | T: tri-helical | F: PF03178 | ECOD (1.6) |
G | PF03178,PF10433 | e8buaG1 | A: beta duplicates or obligate multimers | X: beta-propeller-like | H: beta-propeller | T: 7-bladed | F: PF03178,PF10433 | ECOD (1.6) |
G | PF10433 | e8buaG2 | A: beta duplicates or obligate multimers | X: beta-propeller-like | H: beta-propeller | T: 7-bladed | F: PF10433 | ECOD (1.6) |
G | PF03178 | e8buaG3 | A: alpha arrays | X: HTH | H: HTH | T: tri-helical | F: PF03178 | ECOD (1.6) |
H | PF00069 | e8buaH1 | A: a+b complex topology | X: Protein kinase/SAICAR synthase/ATP-grasp (From Homology) | H: Protein kinase/SAICAR synthase/ATP-grasp | T: Protein kinase | F: PF00069 | ECOD (1.6) |
B | PF00069 | e8buaB1 | A: a+b complex topology | X: Protein kinase/SAICAR synthase/ATP-grasp (From Homology) | H: Protein kinase/SAICAR synthase/ATP-grasp | T: Protein kinase | F: PF00069 | ECOD (1.6) |
E | PF00069 | e8buaE1 | A: a+b complex topology | X: Protein kinase/SAICAR synthase/ATP-grasp (From Homology) | H: Protein kinase/SAICAR synthase/ATP-grasp | T: Protein kinase | F: PF00069 | ECOD (1.6) |
C | PF00134 | e8buaC1 | A: alpha arrays | X: HTH | H: HTH | T: Cyclin-like | F: PF00134 | ECOD (1.6) |
C | PF21797 | e8buaC2 | A: alpha arrays | X: HTH | H: HTH | T: Cyclin-like | F: PF21797 | ECOD (1.6) |
I | PF00134 | e8buaI1 | A: alpha arrays | X: HTH | H: HTH | T: Cyclin-like | F: PF00134 | ECOD (1.6) |
I | PF21797 | e8buaI2 | A: alpha arrays | X: HTH | H: HTH | T: Cyclin-like | F: PF21797 | ECOD (1.6) |
F | PF00134 | e8buaF2 | A: alpha arrays | X: HTH | H: HTH | T: Cyclin-like | F: PF00134 | ECOD (1.6) |
F | PF21797 | e8buaF1 | A: alpha arrays | X: HTH | H: HTH | T: Cyclin-like | F: PF21797 | ECOD (1.6) |
Protein Family Annotation Pfam Database Homepage
Chains | Accession | Name | Description | Comments | Source |
---|---|---|---|---|---|
PF10433 | Mono-functional DNA-alkylating methyl methanesulfonate N-term (MMS1_N) | Mono-functional DNA-alkylating methyl methanesulfonate N-term | - | Repeat | |
PF03178 | CPSF A subunit region (CPSF_A) | CPSF A subunit region | - | Repeat | |
PF00069 | Protein kinase domain (Pkinase) | Protein kinase domain | - | Domain | |
PF00134 | Cyclin, N-terminal domain (Cyclin_N) | Cyclin, N-terminal domain | Cyclins regulate cyclin dependent kinases (CDKs). Swiss:P22674 is a Uracil-DNA glycosylase that is related to other cyclins [4]. Cyclins contain two domains of similar all-alpha fold, of which this family corresponds with the N-terminal domain. | Domain | |
PF21797 | Cyclin-T2-like, C-terminal domain (CycT2-like_C) | Cyclin-T2-like, C-terminal domain | This domain is found at the C-terminal end of human Cyclin-T2 (CycT2) and similar animal sequences. CycT2 is the regulatory subunit of the cyclin-dependent kinase pair (CDK9/cyclin T) complex, also called positive transcription elongation factor B (P ... | Domain |
Gene Ontology: Gene Product Annotation Gene Ontology Database Homepage
InterPro: Protein Family Classification InterPro Database Homepage
Chains | Accession | Name | Type |
---|---|---|---|
IPR018846 | Cleavage/polyadenylation specificity factor, A subunit, N-terminal | Domain | |
IPR036322 | WD40-repeat-containing domain superfamily | Homologous Superfamily | |
IPR015943 | WD40/YVTN repeat-like-containing domain superfamily | Homologous Superfamily | |
IPR004871 | Cleavage/polyadenylation specificity factor, A subunit, C-terminal | Domain | |
IPR050358 | RSE1/DDB1/CFT1/CPSF1 | Family | |
IPR017441 | Protein kinase, ATP binding site | Binding Site | |
IPR000719 | Protein kinase domain | Domain | |
IPR050108 | Cyclin-dependent kinase | Family | |
IPR011009 | Protein kinase-like domain superfamily | Homologous Superfamily | |
IPR008271 | Serine/threonine-protein kinase, active site | Active Site | |
IPR004367 | Cyclin, C-terminal domain | Domain | |
IPR006671 | Cyclin, N-terminal | Domain | |
IPR036915 | Cyclin-like superfamily | Homologous Superfamily | |
IPR043198 | Cyclin/Cyclin-like subunit Ssn8 | Family | |
IPR013763 | Cyclin-like domain | Domain |