8BU6
Structure of DDB1 bound to DS55-engaged CDK12-cyclin K
Domain Annotation: SCOP2 Classification SCOP2 Database Homepage
Chains | Type | Family Name | Domain Identifier | Family Identifier | Provenance Source (Version) |
---|---|---|---|---|---|
A [auth G] | SCOP2B Superfamily | WD40 repeat-like | 8052530 | 3001694 | SCOP2B (2021-05-27) |
A [auth G] | SCOP2B Superfamily | WD40 repeat-like | 8052530 | 3001694 | SCOP2B (2021-05-27) |
A [auth G] | SCOP2B Superfamily | WD40 repeat-like | 8051194 | 3001694 | SCOP2B (2021-05-27) |
D | SCOP2B Superfamily | WD40 repeat-like | 8052530 | 3001694 | SCOP2B (2021-05-27) |
D | SCOP2B Superfamily | WD40 repeat-like | 8051194 | 3001694 | SCOP2B (2021-05-27) |
D | SCOP2B Superfamily | WD40 repeat-like | 8052530 | 3001694 | SCOP2B (2021-05-27) |
G [auth A] | SCOP2B Superfamily | WD40 repeat-like | 8052530 | 3001694 | SCOP2B (2021-05-27) |
G [auth A] | SCOP2B Superfamily | WD40 repeat-like | 8051194 | 3001694 | SCOP2B (2021-05-27) |
G [auth A] | SCOP2B Superfamily | WD40 repeat-like | 8052530 | 3001694 | SCOP2B (2021-05-27) |
B [auth H] | SCOP2B Superfamily | Protein kinase-like (PK-like) | 8062460 | 3000066 | SCOP2B (2021-05-27) |
H [auth B] | SCOP2B Superfamily | Protein kinase-like (PK-like) | 8062460 | 3000066 | SCOP2B (2021-05-27) |
E | SCOP2B Superfamily | Protein kinase-like (PK-like) | 8062460 | 3000066 | SCOP2B (2021-05-27) |
C [auth I] | SCOP2B Superfamily | Cyclin-like | 8034370 | 3000768 | SCOP2B (2021-05-27) |
C [auth I] | SCOP2B Superfamily | Cyclin-like | 8034372 | 3000768 | SCOP2B (2021-05-27) |
F | SCOP2B Superfamily | Cyclin-like | 8034370 | 3000768 | SCOP2B (2021-05-27) |
F | SCOP2B Superfamily | Cyclin-like | 8034372 | 3000768 | SCOP2B (2021-05-27) |
I [auth C] | SCOP2B Superfamily | Cyclin-like | 8034372 | 3000768 | SCOP2B (2021-05-27) |
I [auth C] | SCOP2B Superfamily | Cyclin-like | 8034370 | 3000768 | SCOP2B (2021-05-27) |
Domain Annotation: ECOD Classification ECOD Database Homepage
Chains | Family Name | Domain Identifier | Architecture | Possible Homology | Homology | Topology | Family | Provenance Source (Version) |
---|---|---|---|---|---|---|---|---|
A [auth G] | PF03178,PF10433 | e8bu6G3 | A: beta duplicates or obligate multimers | X: beta-propeller-like | H: beta-propeller | T: 7-bladed | F: PF03178,PF10433 | ECOD (1.6) |
A [auth G] | PF10433 | e8bu6G1 | A: beta duplicates or obligate multimers | X: beta-propeller-like | H: beta-propeller | T: 7-bladed | F: PF10433 | ECOD (1.6) |
A [auth G] | PF03178 | e8bu6G2 | A: alpha arrays | X: HTH | H: HTH | T: tri-helical | F: PF03178 | ECOD (1.6) |
D | PF03178,PF10433 | e8bu6D3 | A: beta duplicates or obligate multimers | X: beta-propeller-like | H: beta-propeller | T: 7-bladed | F: PF03178,PF10433 | ECOD (1.6) |
D | PF10433 | e8bu6D2 | A: beta duplicates or obligate multimers | X: beta-propeller-like | H: beta-propeller | T: 7-bladed | F: PF10433 | ECOD (1.6) |
D | PF03178 | e8bu6D1 | A: alpha arrays | X: HTH | H: HTH | T: tri-helical | F: PF03178 | ECOD (1.6) |
G [auth A] | PF03178,PF10433 | e8bu6A2 | A: beta duplicates or obligate multimers | X: beta-propeller-like | H: beta-propeller | T: 7-bladed | F: PF03178,PF10433 | ECOD (1.6) |
G [auth A] | PF10433 | e8bu6A1 | A: beta duplicates or obligate multimers | X: beta-propeller-like | H: beta-propeller | T: 7-bladed | F: PF10433 | ECOD (1.6) |
G [auth A] | PF03178 | e8bu6A3 | A: alpha arrays | X: HTH | H: HTH | T: tri-helical | F: PF03178 | ECOD (1.6) |
B [auth H] | PF00069 | e8bu6H1 | A: a+b complex topology | X: Protein kinase/SAICAR synthase/ATP-grasp (From Homology) | H: Protein kinase/SAICAR synthase/ATP-grasp | T: Protein kinase | F: PF00069 | ECOD (1.6) |
H [auth B] | PF00069 | e8bu6B1 | A: a+b complex topology | X: Protein kinase/SAICAR synthase/ATP-grasp (From Homology) | H: Protein kinase/SAICAR synthase/ATP-grasp | T: Protein kinase | F: PF00069 | ECOD (1.6) |
E | PF00069 | e8bu6E1 | A: a+b complex topology | X: Protein kinase/SAICAR synthase/ATP-grasp (From Homology) | H: Protein kinase/SAICAR synthase/ATP-grasp | T: Protein kinase | F: PF00069 | ECOD (1.6) |
C [auth I] | PF00134 | e8bu6I1 | A: alpha arrays | X: HTH | H: HTH | T: Cyclin-like | F: PF00134 | ECOD (1.6) |
C [auth I] | PF21797 | e8bu6I2 | A: alpha arrays | X: HTH | H: HTH | T: Cyclin-like | F: PF21797 | ECOD (1.6) |
F | PF00134 | e8bu6F2 | A: alpha arrays | X: HTH | H: HTH | T: Cyclin-like | F: PF00134 | ECOD (1.6) |
F | PF21797 | e8bu6F1 | A: alpha arrays | X: HTH | H: HTH | T: Cyclin-like | F: PF21797 | ECOD (1.6) |
I [auth C] | PF00134 | e8bu6C2 | A: alpha arrays | X: HTH | H: HTH | T: Cyclin-like | F: PF00134 | ECOD (1.6) |
I [auth C] | PF21797 | e8bu6C1 | A: alpha arrays | X: HTH | H: HTH | T: Cyclin-like | F: PF21797 | ECOD (1.6) |
Protein Family Annotation Pfam Database Homepage
Chains | Accession | Name | Description | Comments | Source |
---|---|---|---|---|---|
A [auth G], D, G [auth A] | PF10433 | Mono-functional DNA-alkylating methyl methanesulfonate N-term (MMS1_N) | Mono-functional DNA-alkylating methyl methanesulfonate N-term | - | Repeat |
A [auth G], D, G [auth A] | PF03178 | CPSF A subunit region (CPSF_A) | CPSF A subunit region | - | Repeat |
B [auth H], E, H [auth B] | PF00069 | Protein kinase domain (Pkinase) | Protein kinase domain | - | Domain |
C [auth I], F, I [auth C] | PF00134 | Cyclin, N-terminal domain (Cyclin_N) | Cyclin, N-terminal domain | Cyclins regulate cyclin dependent kinases (CDKs). Swiss:P22674 is a Uracil-DNA glycosylase that is related to other cyclins [4]. Cyclins contain two domains of similar all-alpha fold, of which this family corresponds with the N-terminal domain. | Domain |
C [auth I], F, I [auth C] | PF21797 | Cyclin-T2-like, C-terminal domain (CycT2-like_C) | Cyclin-T2-like, C-terminal domain | This domain is found at the C-terminal end of human Cyclin-T2 (CycT2) and similar animal sequences. CycT2 is the regulatory subunit of the cyclin-dependent kinase pair (CDK9/cyclin T) complex, also called positive transcription elongation factor B (P ... | Domain |
Gene Ontology: Gene Product Annotation Gene Ontology Database Homepage
InterPro: Protein Family Classification InterPro Database Homepage
Pharos: Disease Associations Pharos Homepage Annotation
Chains | Drug Target   | Associated Disease |
---|---|---|
C [auth I], F, I [auth C] | O75909 | : 
Protein Modification Annotation
Modified Residue(s) | ||
---|---|---|
Chain | Residue(s) | Description |
B [auth H], E, H [auth B] | TPO | Parent Component: THR :  AA0038 :  O-phospho-L-threonine MOD:00047 |