8BHY
DNA-PK Ku80 mediated dimer bound to PAXX and XLF
Domain Annotation: SCOP2 Classification SCOP2 Database Homepage
Chains | Type | Family Name | Domain Identifier | Family Identifier | Provenance Source (Version) |
---|---|---|---|---|---|
B | SCOP2B Superfamily | SPOC domain-like | 8035571 | 3000675 | SCOP2B (2021-05-27) |
B | SCOP2B Superfamily | vWA-like | 8035574 | 3000832 | SCOP2B (2021-05-27) |
N [auth T] | SCOP2B Superfamily | vWA-like | 8035574 | 3000832 | SCOP2B (2021-05-27) |
N [auth T] | SCOP2B Superfamily | SPOC domain-like | 8035571 | 3000675 | SCOP2B (2021-05-27) |
C | SCOP2B Superfamily | vWA-like | 8035579 | 3000832 | SCOP2B (2021-05-27) |
C | SCOP2B Superfamily | C-terminal domain of Ku80 | 8041016 | 3001210 | SCOP2B (2021-05-27) |
C | SCOP2B Superfamily | SPOC domain-like | 8035577 | 3000675 | SCOP2B (2021-05-27) |
H [auth L] | SCOP2B Superfamily | SPOC domain-like | 8035577 | 3000675 | SCOP2B (2021-05-27) |
H [auth L] | SCOP2B Superfamily | vWA-like | 8035579 | 3000832 | SCOP2B (2021-05-27) |
D | SCOP2B Superfamily | XRCC4 N-terminal domain-like | 8053699 | 3001319 | SCOP2B (2021-05-27) |
I [auth M] | SCOP2B Superfamily | XRCC4 N-terminal domain-like | 8053699 | 3001319 | SCOP2B (2021-05-27) |
E [auth G] | SCOP2B Superfamily | XRCC4 N-terminal domain-like | 8036633 | 3001319 | SCOP2B (2021-05-27) |
E [auth G] | SCOP2B Superfamily | XRCC4 C-terminal oligomerization domain-like | 8036636 | 3001502 | SCOP2B (2021-05-27) |
F [auth H] | SCOP2B Superfamily | XRCC4 C-terminal oligomerization domain-like | 8036636 | 3001502 | SCOP2B (2021-05-27) |
F [auth H] | SCOP2B Superfamily | XRCC4 N-terminal domain-like | 8036633 | 3001319 | SCOP2B (2021-05-27) |
J [auth P] | SCOP2B Superfamily | XRCC4 C-terminal oligomerization domain-like | 8036636 | 3001502 | SCOP2B (2021-05-27) |
J [auth P] | SCOP2B Superfamily | XRCC4 N-terminal domain-like | 8036633 | 3001319 | SCOP2B (2021-05-27) |
K [auth Q] | SCOP2B Superfamily | XRCC4 C-terminal oligomerization domain-like | 8036636 | 3001502 | SCOP2B (2021-05-27) |
K [auth Q] | SCOP2B Superfamily | XRCC4 N-terminal domain-like | 8036633 | 3001319 | SCOP2B (2021-05-27) |
G [auth I] | SCOP2B Superfamily | DNA ligase IV Xrcc4-binding domain-like | 8095958 | 3002713 | SCOP2B (2021-05-27) |
L [auth R] | SCOP2B Superfamily | DNA ligase IV Xrcc4-binding domain-like | 8095958 | 3002713 | SCOP2B (2021-05-27) |
Domain Annotation: ECOD Classification ECOD Database Homepage
Chains | Family Name | Domain Identifier | Architecture | Possible Homology | Homology | Topology | Family | Provenance Source (Version) |
---|---|---|---|---|---|---|---|---|
B | PF02735,PF03730 | e8bhyB1 | A: beta barrels | X: SPOC domain-like | H: SPOC domain-related | T: Ku70/80 subunit middle domain | F: PF02735,PF03730 | ECOD (1.6) |
B | PF03731 | e8bhyB2 | A: a/b three-layered sandwiches | X: HAD domain-like | H: HAD domain-related | T: vWA-like | F: PF03731 | ECOD (1.6) |
N [auth T] | PF02735,PF03730 | e8bhyT2 | A: beta barrels | X: SPOC domain-like | H: SPOC domain-related | T: Ku70/80 subunit middle domain | F: PF02735,PF03730 | ECOD (1.6) |
N [auth T] | PF03731 | e8bhyT1 | A: a/b three-layered sandwiches | X: HAD domain-like | H: HAD domain-related | T: vWA-like | F: PF03731 | ECOD (1.6) |
C | PF02735,PF03730 | e8bhyC1 | A: beta barrels | X: SPOC domain-like | H: SPOC domain-related | T: Ku70/80 subunit middle domain | F: PF02735,PF03730 | ECOD (1.6) |
C | PF08785 | e8bhyC3 | A: alpha superhelices | X: Repetitive alpha hairpins | H: C-terminal domain of Ku80 (From Topology) | T: C-terminal domain of Ku80 | F: PF08785 | ECOD (1.6) |
C | PF03731 | e8bhyC2 | A: a/b three-layered sandwiches | X: HAD domain-like | H: HAD domain-related | T: vWA-like | F: PF03731 | ECOD (1.6) |
H [auth L] | PF02735,PF03730 | e8bhyL1 | A: beta barrels | X: SPOC domain-like | H: SPOC domain-related | T: Ku70/80 subunit middle domain | F: PF02735,PF03730 | ECOD (1.6) |
H [auth L] | PF08785 | e8bhyL3 | A: alpha superhelices | X: Repetitive alpha hairpins | H: C-terminal domain of Ku80 (From Topology) | T: C-terminal domain of Ku80 | F: PF08785 | ECOD (1.6) |
H [auth L] | PF03731 | e8bhyL2 | A: a/b three-layered sandwiches | X: HAD domain-like | H: HAD domain-related | T: vWA-like | F: PF03731 | ECOD (1.6) |
D | PF15384 | e8bhyD1 | A: beta barrels | X: XRCC4, N-terminal domain-like | H: XRCC4, N-terminal domain (From Topology) | T: XRCC4, N-terminal domain | F: PF15384 | ECOD (1.6) |
D | PF15384 | e8bhyD3 | A: alpha arrays | X: HTH | H: HTH | T: HTH motif inserted in other structures | F: PF15384 | ECOD (1.6) |
D | PF15384 | e8bhyD2 | A: alpha duplicates or obligate multimers | X: XRCC4 C-terminal oligomerization domain (From Topology) | H: XRCC4 C-terminal oligomerization domain (From Topology) | T: XRCC4 C-terminal oligomerization domain | F: PF15384 | ECOD (1.6) |
I [auth M] | PF15384 | e8bhyM3 | A: beta barrels | X: XRCC4, N-terminal domain-like | H: XRCC4, N-terminal domain (From Topology) | T: XRCC4, N-terminal domain | F: PF15384 | ECOD (1.6) |
I [auth M] | PF15384 | e8bhyM2 | A: alpha arrays | X: HTH | H: HTH | T: HTH motif inserted in other structures | F: PF15384 | ECOD (1.6) |
I [auth M] | PF15384 | e8bhyM1 | A: alpha duplicates or obligate multimers | X: XRCC4 C-terminal oligomerization domain (From Topology) | H: XRCC4 C-terminal oligomerization domain (From Topology) | T: XRCC4 C-terminal oligomerization domain | F: PF15384 | ECOD (1.6) |
E [auth G] | PF06632 | e8bhyG3 | A: beta barrels | X: XRCC4, N-terminal domain-like | H: XRCC4, N-terminal domain (From Topology) | T: XRCC4, N-terminal domain | F: PF06632 | ECOD (1.6) |
E [auth G] | F_UNCLASSIFIED | e8bhyG1 | A: alpha arrays | X: HTH | H: HTH | T: HTH motif inserted in other structures | F: F_UNCLASSIFIED | ECOD (1.6) |
E [auth G] | PF21924 | e8bhyG2 | A: alpha duplicates or obligate multimers | X: XRCC4 C-terminal oligomerization domain (From Topology) | H: XRCC4 C-terminal oligomerization domain (From Topology) | T: XRCC4 C-terminal oligomerization domain | F: PF21924 | ECOD (1.6) |
F [auth H] | PF06632 | e8bhyH3 | A: beta barrels | X: XRCC4, N-terminal domain-like | H: XRCC4, N-terminal domain (From Topology) | T: XRCC4, N-terminal domain | F: PF06632 | ECOD (1.6) |
F [auth H] | F_UNCLASSIFIED | e8bhyH2 | A: alpha arrays | X: HTH | H: HTH | T: HTH motif inserted in other structures | F: F_UNCLASSIFIED | ECOD (1.6) |
F [auth H] | PF21924 | e8bhyH1 | A: alpha duplicates or obligate multimers | X: XRCC4 C-terminal oligomerization domain (From Topology) | H: XRCC4 C-terminal oligomerization domain (From Topology) | T: XRCC4 C-terminal oligomerization domain | F: PF21924 | ECOD (1.6) |
J [auth P] | PF06632 | e8bhyP3 | A: beta barrels | X: XRCC4, N-terminal domain-like | H: XRCC4, N-terminal domain (From Topology) | T: XRCC4, N-terminal domain | F: PF06632 | ECOD (1.6) |
J [auth P] | F_UNCLASSIFIED | e8bhyP1 | A: alpha arrays | X: HTH | H: HTH | T: HTH motif inserted in other structures | F: F_UNCLASSIFIED | ECOD (1.6) |
J [auth P] | PF21924 | e8bhyP2 | A: alpha duplicates or obligate multimers | X: XRCC4 C-terminal oligomerization domain (From Topology) | H: XRCC4 C-terminal oligomerization domain (From Topology) | T: XRCC4 C-terminal oligomerization domain | F: PF21924 | ECOD (1.6) |
K [auth Q] | PF06632 | e8bhyQ1 | A: beta barrels | X: XRCC4, N-terminal domain-like | H: XRCC4, N-terminal domain (From Topology) | T: XRCC4, N-terminal domain | F: PF06632 | ECOD (1.6) |
K [auth Q] | F_UNCLASSIFIED | e8bhyQ2 | A: alpha arrays | X: HTH | H: HTH | T: HTH motif inserted in other structures | F: F_UNCLASSIFIED | ECOD (1.6) |
K [auth Q] | PF21924 | e8bhyQ3 | A: alpha duplicates or obligate multimers | X: XRCC4 C-terminal oligomerization domain (From Topology) | H: XRCC4 C-terminal oligomerization domain (From Topology) | T: XRCC4 C-terminal oligomerization domain | F: PF21924 | ECOD (1.6) |
Protein Family Annotation Pfam Database Homepage
Chains | Accession | Name | Description | Comments | Source |
---|---|---|---|---|---|
A, M [auth S] | PF08163 | DNA-dependent protein kinase catalytic subunit, CC3 (DNAPKcs_CC3) | DNA-dependent protein kinase catalytic subunit, CC3 | - | Repeat |
A, M [auth S] | PF02260 | FATC domain (FATC) | FATC domain | - | Family |
A, M [auth S] | PF00454 | Phosphatidylinositol 3- and 4-kinase (PI3_PI4_kinase) | Phosphatidylinositol 3- and 4-kinase | - | Family |
A, M [auth S] | PF20502 | DNA-dependent protein kinase catalytic subunit, CC1/2 (DNAPKcs_CC1-2) | DNA-dependent protein kinase catalytic subunit, CC1/2 | - | Repeat |
A, M [auth S] | PF19704 | DNA-PKcs, CC5 (DNAPKcs_CC5) | DNA-PKcs, CC5 | - | Repeat |
B, N [auth T] | PF02735 | Ku70/Ku80 beta-barrel domain (Ku) | Ku70/Ku80 beta-barrel domain | The Ku heterodimer (composed of Ku70 Swiss:P12956 and Ku80 Swiss:P13010) contributes to genomic integrity through its ability to bind DNA double-strand breaks and facilitate repair by the non-homologous end-joining pathway. This is the central DNA-bi ... | Domain |
B, N [auth T] | PF03730 | Ku70/Ku80 C-terminal arm (Ku_C) | Ku70/Ku80 C-terminal arm | - | Family |
B, N [auth T] | PF03731 | Ku70/Ku80 N-terminal alpha/beta domain (Ku_N) | Ku70/Ku80 N-terminal alpha/beta domain | The Ku heterodimer (composed of Ku70 Swiss:P12956 and Ku80 Swiss:P13010) contributes to genomic integrity through its ability to bind DNA double-strand breaks and facilitate repair by the non-homologous end-joining pathway. This is the amino terminal ... | Domain |
C, H [auth L] | PF02735 | Ku70/Ku80 beta-barrel domain (Ku) | Ku70/Ku80 beta-barrel domain | The Ku heterodimer (composed of Ku70 Swiss:P12956 and Ku80 Swiss:P13010) contributes to genomic integrity through its ability to bind DNA double-strand breaks and facilitate repair by the non-homologous end-joining pathway. This is the central DNA-bi ... | Domain |
C, H [auth L] | PF08785 | Ku C terminal domain like (Ku_PK_bind) | Ku C terminal domain like | The non-homologous end joining (NHEJ) pathway is one method by which double stranded breaks in chromosomal DNA are repaired. Ku is a component of a multi-protein complex that is involved in the NHEJ. Ku has affinity for DNA ends and recruits the DN ... | Domain |
C, H [auth L] | PF03730 | Ku70/Ku80 C-terminal arm (Ku_C) | Ku70/Ku80 C-terminal arm | - | Family |
C, H [auth L] | PF03731 | Ku70/Ku80 N-terminal alpha/beta domain (Ku_N) | Ku70/Ku80 N-terminal alpha/beta domain | The Ku heterodimer (composed of Ku70 Swiss:P12956 and Ku80 Swiss:P13010) contributes to genomic integrity through its ability to bind DNA double-strand breaks and facilitate repair by the non-homologous end-joining pathway. This is the amino terminal ... | Domain |
D, I [auth M] | PF15384 | PAXX, PAralog of XRCC4 and XLF, also called C9orf142 (PAXX) | PAXX, PAralog of XRCC4 and XLF, also called C9orf142 | PAXX is a set of eukaryotic proteins that belong to the XRCC4 superfamily of DNA-double-strand break-repair proteins. PAXX interacts directly with DSB-repair protein Ku and is recruited to DNA-damage sites in cells thus functioning with XRCC4 and XLF ... | Domain |
E [auth G], F [auth H], J [auth P], K [auth Q] | PF06632 | XRCC4 N-terminal domain (XRCC4) | XRCC4 N-terminal domain | This family consists of several eukaryotic DNA double-strand break repair and V(D)J recombination protein XRCC4 sequences. In the non-homologous end joining pathway of DNA double-strand break repair, the ligation step is catalysed by a complex of XRC ... | Domain |
E [auth G], F [auth H], J [auth P], K [auth Q] | PF21924 | XRCC4 coiled-coil (XRCC4_CC) | XRCC4 coiled-coil | - | Coiled-coil |
G [auth I], L [auth R] | PF11411 | DNA ligase IV (DNA_ligase_IV) | DNA ligase IV | - | Family |
G [auth I], L [auth R] | PF00533 | BRCA1 C Terminus (BRCT) domain (BRCT) | BRCA1 C Terminus (BRCT) domain | - | Family |