8BF4
Crystal structure of Mouse Plexin-B1 (20-535) in complex with VHH15 and VHH14
Domain Annotation: ECOD Classification ECOD Database Homepage
Chains | Family Name | Domain Identifier | Architecture | Possible Homology | Homology | Topology | Family | Provenance Source (Version) |
---|---|---|---|---|---|---|---|---|
A [auth D] | F_UNCLASSIFIED | e8bf4D1 | A: beta sandwiches | X: Immunoglobulin-like beta-sandwich | H: Immunoglobulin-related | T: Immunoglobulin/Fibronectin type III/E set domains/PapD-like | F: F_UNCLASSIFIED | ECOD (1.6) |
D [auth A] | F_UNCLASSIFIED | e8bf4A1 | A: beta sandwiches | X: Immunoglobulin-like beta-sandwich | H: Immunoglobulin-related | T: Immunoglobulin/Fibronectin type III/E set domains/PapD-like | F: F_UNCLASSIFIED | ECOD (1.6) |
B [auth F] | F_UNCLASSIFIED | e8bf4F2 | A: beta duplicates or obligate multimers | X: beta-propeller-like | H: beta-propeller | T: 7-bladed | F: F_UNCLASSIFIED | ECOD (1.6) |
B [auth F] | F_UNCLASSIFIED | e8bf4F1 | A: few secondary structure elements | X: Trefoil/Plexin domain-like (From Topology) | H: Trefoil/Plexin domain-like (From Topology) | T: Trefoil/Plexin domain-like | F: F_UNCLASSIFIED | ECOD (1.6) |
E [auth C] | F_UNCLASSIFIED | e8bf4C1 | A: beta duplicates or obligate multimers | X: beta-propeller-like | H: beta-propeller | T: 7-bladed | F: F_UNCLASSIFIED | ECOD (1.6) |
E [auth C] | F_UNCLASSIFIED | e8bf4C2 | A: few secondary structure elements | X: Trefoil/Plexin domain-like (From Topology) | H: Trefoil/Plexin domain-like (From Topology) | T: Trefoil/Plexin domain-like | F: F_UNCLASSIFIED | ECOD (1.6) |
C [auth E] | F_UNCLASSIFIED | e8bf4E1 | A: beta sandwiches | X: Immunoglobulin-like beta-sandwich | H: Immunoglobulin-related | T: Immunoglobulin/Fibronectin type III/E set domains/PapD-like | F: F_UNCLASSIFIED | ECOD (1.6) |
F [auth B] | F_UNCLASSIFIED | e8bf4B1 | A: beta sandwiches | X: Immunoglobulin-like beta-sandwich | H: Immunoglobulin-related | T: Immunoglobulin/Fibronectin type III/E set domains/PapD-like | F: F_UNCLASSIFIED | ECOD (1.6) |
SAbDab Antibody Annotation SAbDab Database Homepage
Chain | Chain Class | Chain Subclass | Chain Type | Antigen Name(s) | Provenance Source |
---|---|---|---|---|---|
A [auth D], D [auth A] | Heavy Chain | IGHV1 | - | plexin-b1 | SAbDab (2024-09-06) |
C [auth E], F [auth B] | Heavy Chain | IGHV1 | - | plexin-b1 | SAbDab (2024-09-06) |
Protein Family Annotation Pfam Database Homepage
Chains | Accession | Name | Description | Comments | Source |
---|---|---|---|---|---|
B [auth F], E [auth C] | PF01437 | Plexin repeat (PSI) | Plexin repeat | - | Family |
B [auth F], E [auth C] | PF01403 | Sema domain (Sema) | Sema domain | - | Repeat |
Gene Ontology: Gene Product Annotation Gene Ontology Database Homepage
InterPro: Protein Family Classification InterPro Database Homepage
Chains | Accession | Name | Type |
---|---|---|---|
B [auth F], E [auth C] | IPR002909 | IPT domain | Domain |
B [auth F], E [auth C] | IPR041362 | Plexin, TIG domain 2 | Domain |
B [auth F], E [auth C] | IPR016201 | PSI domain | Domain |
B [auth F], E [auth C] | IPR014756 | Immunoglobulin E-set | Homologous Superfamily |
B [auth F], E [auth C] | IPR008936 | Rho GTPase activation protein | Homologous Superfamily |
B [auth F], E [auth C] | IPR015943 | WD40/YVTN repeat-like-containing domain superfamily | Homologous Superfamily |
B [auth F], E [auth C] | IPR002165 | Plexin repeat | Repeat |
B [auth F], E [auth C] | IPR041019 | Plexin, TIG domain 1 | Domain |
B [auth F], E [auth C] | IPR031148 | Plexin family | Family |
B [auth F], E [auth C] | IPR046800 | Plexin, cytoplasmic RhoGTPase-binding domain | Domain |
B [auth F], E [auth C] | IPR013783 | Immunoglobulin-like fold | Homologous Superfamily |
B [auth F], E [auth C] | IPR013548 | Plexin, cytoplasmic RasGAP domain | Domain |
B [auth F], E [auth C] | IPR036352 | Sema domain superfamily | Homologous Superfamily |
B [auth F], E [auth C] | IPR001627 | Sema domain | Domain |