8ASV
Cryo-EM structure of yeast Elongator complex
Domain Annotation: ECOD Classification ECOD Database Homepage
Chains | Family Name | Domain Identifier | Architecture | Possible Homology | Homology | Topology | Family | Provenance Source (Version) |
---|---|---|---|---|---|---|---|---|
H | PF10483 | e8asvH1 | A: a/b three-layered sandwiches | X: P-loop domains-like | H: P-loop domains-related | T: P-loop containing nucleoside triphosphate hydrolases | F: PF10483 | ECOD (1.6) |
E | PF10483 | e8asvE1 | A: a/b three-layered sandwiches | X: P-loop domains-like | H: P-loop domains-related | T: P-loop containing nucleoside triphosphate hydrolases | F: PF10483 | ECOD (1.6) |
F | F_UNCLASSIFIED | e8asvF1 | A: a/b three-layered sandwiches | X: P-loop domains-like | H: P-loop domains-related | T: P-loop containing nucleoside triphosphate hydrolases | F: F_UNCLASSIFIED | ECOD (1.6) |
I | F_UNCLASSIFIED | e8asvI1 | A: a/b three-layered sandwiches | X: P-loop domains-like | H: P-loop domains-related | T: P-loop containing nucleoside triphosphate hydrolases | F: F_UNCLASSIFIED | ECOD (1.6) |
G | PF05625 | e8asvG1 | A: a/b three-layered sandwiches | X: P-loop domains-like | H: P-loop domains-related | T: P-loop containing nucleoside triphosphate hydrolases | F: PF05625 | ECOD (1.6) |
Protein Family Annotation Pfam Database Homepage
Chains | Accession | Name | Description | Comments | Source |
---|---|---|---|---|---|
PF04762 | IKI3 family (IKI3) | IKI3 family | - | Repeat | |
PF10483 | Elongator subunit Iki1 (Elong_Iki1) | Elongator subunit Iki1 | - | Family | |
PF00400 | WD domain, G-beta repeat (WD40) | WD domain, G-beta repeat | - | Repeat | |
PF04055 | Radical SAM superfamily (Radical_SAM) | Radical SAM superfamily | Radical SAM proteins catalyse diverse reactions, including unusual methylations, isomerisation, sulphur insertion, ring formation, anaerobic oxidation and protein radical formation. | Domain | |
PF16199 | Radical_SAM C-terminal domain (Radical_SAM_C) | Radical_SAM C-terminal domain | - | Family | |
PF00583 | Acetyltransferase (GNAT) family (Acetyltransf_1) | Acetyltransferase (GNAT) family | - | Family | |
PF05625 | PAXNEB protein (PAXNEB) | PAXNEB protein | PAXNEB or PAX6 neighbour is found in several eukaryotic organisms. PAXNED is an RNA polymerase II Elongator protein subunit [2]. It is part of the HAP subcomplex of Elongator, which is a six-subunit component of the RNA polymerase II holoenzyme. The ... | Domain |
Gene Ontology: Gene Product Annotation Gene Ontology Database Homepage
InterPro: Protein Family Classification InterPro Database Homepage
Chains | Accession | Name | Type |
---|---|---|---|
IPR006849 | Elongator complex protein 1 | Family | |
IPR019519 | Elongator complex protein 5 | Family | |
IPR027417 | P-loop containing nucleoside triphosphate hydrolase | Homologous Superfamily | |
IPR036322 | WD40-repeat-containing domain superfamily | Homologous Superfamily | |
IPR001680 | WD40 repeat | Repeat | |
IPR037289 | Elongator complex protein 2 | Family | |
IPR015943 | WD40/YVTN repeat-like-containing domain superfamily | Homologous Superfamily | |
IPR007197 | Radical SAM | Domain | |
IPR034687 | Elongator complex protein 3-like | Family | |
IPR006638 | Elp3/MiaA/NifB-like, radical SAM core domain | Domain | |
IPR032432 | Radical SAM, C-terminal extension | Domain | |
IPR000182 | GNAT domain | Domain | |
IPR016181 | Acyl-CoA N-acyltransferase | Homologous Superfamily | |
IPR039661 | ELP3/YhcC | Family | |
IPR018627 | Elongator complex protein 6 | Family | |
IPR027417 | P-loop containing nucleoside triphosphate hydrolase | Homologous Superfamily | |
IPR008728 | Elongator complex protein 4 | Family | |
IPR027417 | P-loop containing nucleoside triphosphate hydrolase | Homologous Superfamily |