Crystal structure of radical SAM epimerase EpeE C223A mutant from Bacillus subtilis with [4Fe-4S] clusters and S-adenosyl-L-methionine bound
Domain Annotation: ECOD Classification ECOD Database Homepage
| Chains | Family Name | Domain Identifier | Architecture | Possible Homology | Homology | Topology | Family | Provenance Source (Version) |
|---|---|---|---|---|---|---|---|---|
| A | Ribosomal_L27A, Ribosomal_L18 | e8ai3A01 | A: beta barrels | X: Fe-binding domain in prismane-like proteins | H: Immunoglobulin-related | T: Immunoglobulin/Fibronectin type III/E set domains/PapD-like | F: Ribosomal_L27A, Ribosomal_L18 | ECOD (v294.2) |
Protein Family Annotation Pfam Database Homepage
| Chains | Accession | Name | Description | Comments | Source |
|---|---|---|---|---|---|
| PF04055 | Radical SAM superfamily (Radical_SAM) | Radical SAM superfamily | Radical SAM proteins catalyse diverse reactions, including unusual methylations, isomerisation, sulphur insertion, ring formation, anaerobic oxidation and protein radical formation. | Domain | |
| PF13353 | 4Fe-4S single cluster domain (Fer4_12) | 4Fe-4S single cluster domain | This family includes proteins containing domains which bind to iron-sulfur clusters. Members include bacterial ferredoxins, various dehydrogenases, and various reductases. The structure of the domain is an alpha-antiparallel beta sandwich. | Domain |
Gene Ontology: Gene Product Annotation Gene Ontology Database Homepage
| Chains | Polymer | Molecular Function | Biological Process | Cellular Component |
|---|---|---|---|---|
| Putative peptide biosynthesis protein YydG | - | - |
InterPro: Protein Family Classification InterPro Database Homepage
| Chains | Accession | Name | Type |
|---|---|---|---|
| IPR007197 | Radical SAM | Domain | |
| IPR058240 | Radical SAM superfamily | Homologous Superfamily | |
| IPR023904 | Peptide radical SAM maturase , YydG | Family | |
| IPR050377 | Radical SAM PqqA peptide cyclase/Mycofactocin maturase MftC-like | Family | |
| IPR013785 | Aldolase-type TIM barrel | Homologous Superfamily |














