7ZWC | pdb_00007zwc

Structure of SNAPc:TBP-TFIIA-TFIIB sub-complex bound to U5 snRNA promoter


Domain Annotation: SCOP2 Classification SCOP2 Database Homepage

ChainsTypeFamily Name Domain Identifier Family IdentifierProvenance Source (Version)
D [auth V]SCOP2B SuperfamilyTranscription factor IIA (TFIIA), beta-barrel domain 8037007 3001281 SCOP2B (2022-06-29)
D [auth V]SCOP2B SuperfamilyTranscription factor IIA (TFIIA), alpha-helical domain 8037005 3001887 SCOP2B (2022-06-29)
C [auth U]SCOP2B SuperfamilyTranscription factor IIA (TFIIA), beta-barrel domain 8037002 3001281 SCOP2B (2022-06-29)
C [auth U]SCOP2B SuperfamilyTranscription factor IIA (TFIIA), alpha-helical domain 8037001 3001887 SCOP2B (2022-06-29)
B [auth O]SCOP2B SuperfamilyTATA-box binding protein-like 8036293 3000705 SCOP2B (2022-06-29)
B [auth O]SCOP2B SuperfamilyTATA-box binding protein-like 8036295 3000705 SCOP2B (2022-06-29)
A [auth M]SCOP2B SuperfamilyCyclin-like 8043880 3000768 SCOP2B (2022-06-29)
A [auth M]SCOP2B SuperfamilyCyclin-like 8043882 3000768 SCOP2B (2022-06-29)

Domain Annotation: ECOD Classification ECOD Database Homepage

ChainsFamily NameDomain Identifier ArchitecturePossible HomologyHomologyTopologyFamilyProvenance Source (Version)
D [auth V]e7zwcV1 A: beta barrelsX: RNase A-likeH: RNase A-likeT: RNase A-likeF:ECOD (v294.2)
C [auth U]e7zwcU1 A: beta barrelsX: RNase A-likeH: RNase A-likeT: RNase A-likeF:ECOD (v294.2)
B [auth O]e7zwcO1 A: beta barrelsX: RNase A-likeH: RNase A-likeT: RNase A-likeF:ECOD (v294.2)
A [auth M]e7zwcM1 A: beta barrelsX: RNase A-likeH: RNase A-likeT: RNase A-likeF:ECOD (v294.2)

Domain Annotation: CATH CATH Database Homepage

ChainDomainClassArchitectureTopologyHomologyProvenance Source (Version)
A [auth M]1.10.472.10 Mainly Alpha Orthogonal Bundle Cyclin A domain 1CATH (utative)

Protein Family Annotation Pfam Database Homepage

ChainsAccessionNameDescriptionCommentsSource
D [auth V]PF02751Transcription initiation factor IIA, gamma subunit (TFIIA_gamma_C)Transcription initiation factor IIA, gamma subunitAccurate transcription in vivo requires at least six general transcription initiation factors, in addition to RNA polymerase II. Transcription initiation factor IIA (TFIIA) is a multimeric protein which facilitates the binding of TFIID to the TATA bo ...Accurate transcription in vivo requires at least six general transcription initiation factors, in addition to RNA polymerase II. Transcription initiation factor IIA (TFIIA) is a multimeric protein which facilitates the binding of TFIID to the TATA box. The C-terminal domain of the gamma subunit is a 12 stranded beta-barrel.
Domain
C [auth U]PF03153Transcription factor IIA, alpha/beta subunit (TFIIA)Transcription factor IIA, alpha/beta subunit- Family
B [auth O]PF00352Transcription factor TFIID (or TATA-binding protein, TBP) (TBP)Transcription factor TFIID (or TATA-binding protein, TBP)Domain
A [auth M]PF00382Transcription factor TFIIB repeat (TFIIB)Transcription factor TFIIB repeatDomain

Gene Ontology: Gene Product Annotation Gene Ontology Database Homepage

ChainsPolymerMolecular FunctionBiological ProcessCellular Component
I [auth N]Non-template strand---
H [auth d]snRNA-activating protein complex subunit 5
G [auth c]snRNA-activating protein complex subunit 4
F [auth b]snRNA-activating protein complex subunit 3
E [auth a]snRNA-activating protein complex subunit 1
D [auth V]Transcription initiation factor IIA subunit 2
C [auth U]Transcription initiation factor IIA subunit 1
B [auth O]TATA-box-binding protein
J [auth T]Template strand---
A [auth M]Transcription initiation factor IIB

InterPro: Protein Family Classification InterPro Database Homepage

ChainsAccessionNameType
H [auth d]IPR029138snRNA-activating protein complex subunit 5Family
G [auth c]IPR009057Homeodomain-like superfamilyHomologous Superfamily
G [auth c]IPR051575Myb-like DNA-bindingFamily
G [auth c]IPR017930Myb domainDomain
G [auth c]IPR017884SANT domainDomain
G [auth c]IPR001005SANT/Myb domainDomain
F [auth b]IPR022042snRNA-activating protein complex, subunit 3Family
E [auth a]IPR019188snRNA-activating protein complex subunit 1Family
D [auth V]IPR015871Transcription initiation factor IIA, gamma subunit, C-terminalDomain
D [auth V]IPR015872Transcription initiation factor IIA, gamma subunit, N-terminalDomain
D [auth V]IPR009083Transcription factor IIA, alpha-helical domainHomologous Superfamily
D [auth V]IPR009088Transcription factor IIA, beta-barrelHomologous Superfamily
D [auth V]IPR003194Transcription initiation factor IIA, gamma subunitFamily
C [auth U]IPR004855Transcription factor IIA, alpha/beta subunitFamily
C [auth U]IPR009088Transcription factor IIA, beta-barrelHomologous Superfamily
B [auth O]IPR030491TATA-box binding protein, conserved siteConserved Site
B [auth O]IPR000814TATA-box binding proteinFamily
B [auth O]IPR012295TBP domain superfamilyHomologous Superfamily
B [auth O]IPR033710TATA-box binding protein, eukaryoticFamily
A [auth M]IPR000812Transcription factor TFIIBFamily
A [auth M]IPR013137Zinc finger, TFIIB-typeDomain
A [auth M]IPR023486Transcription factor TFIIB, conserved siteConserved Site
A [auth M]IPR013150Transcription factor TFIIB, cyclin-like domainDomain
A [auth M]IPR036915Cyclin-like superfamilyHomologous Superfamily
A [auth M]IPR013763Cyclin-like domainDomain

Pharos: Disease Associations Pharos Homepage Annotation

ChainsDrug Target  Associated Disease
H [auth d]O75971
G [auth c]Q5SXM2
F [auth b]Q92966
E [auth a]Q16533
D [auth V]P52657
C [auth U]P52655
B [auth O]P20226
A [auth M]Q00403