7ZTA

Structure of an Escherichia coli 70S ribosome stalled by Tetracenomycin X during translation of an MAAAPQK(C) peptide


Domain Annotation: ECOD Classification ECOD Database Homepage

ChainsFamily NameDomain Identifier ArchitecturePossible HomologyHomologyTopologyFamilyProvenance Source (Version)
B [auth S021]F_UNCLASSIFIEDe7ztaS0211 A: a/b three-layered sandwichesX: Flavodoxin-likeH: Ribosomal protein S2/SIS domain (From Topology)T: Ribosomal protein S2/SIS domainF: F_UNCLASSIFIEDECOD (1.6)
D [auth S041]F_UNCLASSIFIEDe7ztaS0411 A: a+b two layersX: beta-GraspH: Ubiquitin-relatedT: Alpha-L RNA-binding motifF: F_UNCLASSIFIEDECOD (1.6)
I [auth S091]F_UNCLASSIFIEDe7ztaS0911 A: a+b two layersX: Ribosomal protein S5 domain 2-like (From Topology)H: Ribosomal protein S5 domain 2-like (From Topology)T: Ribosomal protein S5 domain 2-likeF: F_UNCLASSIFIEDECOD (1.6)
P [auth S161]F_UNCLASSIFIEDe7ztaS1611 A: a+b two layersX: Ribosomal protein S16 (From Topology)H: Ribosomal protein S16 (From Topology)T: Ribosomal protein S16F: F_UNCLASSIFIEDECOD (1.6)
U [auth S211]F_UNCLASSIFIEDe7ztaS2111 A: extended segmentsX: 30S ribosomal protein S21 (From Topology)H: 30S ribosomal protein S21 (From Topology)T: 30S ribosomal protein S21F: F_UNCLASSIFIEDECOD (1.6)
SA [auth L291]F_UNCLASSIFIEDe7ztaL2911 A: alpha bundlesX: Long alpha-hairpinH: Ribosomal protein L29 (L29p) (From Topology)T: Ribosomal protein L29 (L29p)F: F_UNCLASSIFIEDECOD (1.6)
UA [auth L311]F_UNCLASSIFIEDe7ztaL3111 A: few secondary structure elementsX: Ribosomal protein L31p (From Topology)H: Ribosomal protein L31p (From Topology)T: Ribosomal protein L31pF: F_UNCLASSIFIEDECOD (1.6)
ZA [auth L361]F_UNCLASSIFIEDe7ztaL3611 A: few secondary structure elementsX: Ribosomal protein L36 (From Topology)H: Ribosomal protein L36 (From Topology)T: Ribosomal protein L36F: F_UNCLASSIFIEDECOD (1.6)
J [auth S101]F_UNCLASSIFIEDe7ztaS1011 A: a+b two layersX: Alpha-beta plaitsH: Ribosomal protein S10 (From Topology)T: Ribosomal protein S10F: F_UNCLASSIFIEDECOD (1.6)
K [auth S111]F_UNCLASSIFIEDe7ztaS1111 A: mixed a+b and a/bX: Ribonuclease H-likeH: Ribonuclease H-like (From Topology)T: Ribonuclease H-likeF: F_UNCLASSIFIEDECOD (1.6)
L [auth S121]F_UNCLASSIFIEDe7ztaS1211 A: beta barrelsX: OB-foldH: Nucleic acid-binding proteins (From Topology)T: Nucleic acid-binding proteinsF: F_UNCLASSIFIEDECOD (1.6)
M [auth S131]F_UNCLASSIFIEDe7ztaS1311 A: alpha arraysX: HhH/H2THH: H2TH (From Topology)T: H2THF: F_UNCLASSIFIEDECOD (1.6)
N [auth S141]F_UNCLASSIFIEDe7ztaS1411 A: few secondary structure elementsX: Glucocorticoid receptor-likeH: LIM domain-likeT: LIM domain-likeF: F_UNCLASSIFIEDECOD (1.6)
O [auth S151]F_UNCLASSIFIEDe7ztaS1511 A: alpha arraysX: S15/NS1 RNA-binding domain (From Topology)H: S15/NS1 RNA-binding domain (From Topology)T: S15/NS1 RNA-binding domainF: F_UNCLASSIFIEDECOD (1.6)
Q [auth S171]F_UNCLASSIFIEDe7ztaS1711 A: beta barrelsX: OB-foldH: Nucleic acid-binding proteins (From Topology)T: Nucleic acid-binding proteinsF: F_UNCLASSIFIEDECOD (1.6)
R [auth S181]F_UNCLASSIFIEDe7ztaS1811 A: alpha arraysX: HTHH: HTHT: tri-helicalF: F_UNCLASSIFIEDECOD (1.6)
S [auth S191]F_UNCLASSIFIEDe7ztaS1911 A: a+b two layersX: Ribosomal protein S19 (From Topology)H: Ribosomal protein S19 (From Topology)T: Ribosomal protein S19F: F_UNCLASSIFIEDECOD (1.6)
T [auth S201]F_UNCLASSIFIEDe7ztaS2011 A: alpha bundlesX: Spectrin repeat-likeH: Ribosomal protein S20 (From Topology)T: Ribosomal protein S20F: F_UNCLASSIFIEDECOD (1.6)
X [auth L021]F_UNCLASSIFIEDe7ztaL0211 A: beta barrelsX: OB-foldH: Nucleic acid-binding proteins (From Topology)T: Nucleic acid-binding proteinsF: F_UNCLASSIFIEDECOD (1.6)
X [auth L021]F_UNCLASSIFIEDe7ztaL0212 A: beta barrelsX: SH3H: SH3T: SH3F: F_UNCLASSIFIEDECOD (1.6)
Y [auth L031]F_UNCLASSIFIEDe7ztaL0311 A: beta barrelsX: cradle loop barrelH: RIFT-relatedT: Alanine racemase-CF: F_UNCLASSIFIEDECOD (1.6)
Z [auth L041]F_UNCLASSIFIEDe7ztaL0411 A: a/b three-layered sandwichesX: Ribosomal protein L4 (From Topology)H: Ribosomal protein L4 (From Topology)T: Ribosomal protein L4F: F_UNCLASSIFIEDECOD (1.6)
AA [auth L051]F_UNCLASSIFIEDe7ztaL0511 A: a+b two layersX: Ribosomal protein L5 (From Topology)H: Ribosomal protein L5 (From Topology)T: Ribosomal protein L5F: F_UNCLASSIFIEDECOD (1.6)
BA [auth L061]F_UNCLASSIFIEDe7ztaL0611 A: a+b two layersX: Ribosomal protein L6 (From Topology)H: Ribosomal protein L6 (From Topology)T: Ribosomal protein L6F: F_UNCLASSIFIEDECOD (1.6)
CA [auth L091]F_UNCLASSIFIEDe7ztaL0911 A: a+b two layersX: L9 N-domain-likeH: L9 N-domain-like (From Topology)T: L9 N-domain-likeF: F_UNCLASSIFIEDECOD (1.6)
CA [auth L091]F_UNCLASSIFIEDe7ztaL0912 A: a+b two layersX: Ribosomal protein L9 C-domain (From Topology)H: Ribosomal protein L9 C-domain (From Topology)T: Ribosomal protein L9 C-domainF: F_UNCLASSIFIEDECOD (1.6)
C [auth S031]F_UNCLASSIFIEDe7ztaS0312 A: a+b two layersX: T-foldH: Ribosomal protein S3-C (From Topology)T: Ribosomal protein S3-CF: F_UNCLASSIFIEDECOD (1.6)
C [auth S031]F_UNCLASSIFIEDe7ztaS0311 A: a+b two layersX: Alpha-lytic protease prodomain-likeH: KH-domainsT: Prokaryotic type KH domain (KH-domain type II)F: F_UNCLASSIFIEDECOD (1.6)
DA [auth L131]F_UNCLASSIFIEDe7ztaL1311 A: a/b three-layered sandwichesX: Ribosomal protein L13/L15p/L18e/L32eH: Ribosomal protein L13 and L16-A (From Topology)T: Ribosomal protein L13 and L16-AF: F_UNCLASSIFIEDECOD (1.6)
EA [auth L141]F_UNCLASSIFIEDe7ztaL1411 A: beta barrelsX: Ribosomal protein L14-likeH: Ribosomal protein L14-related (From Topology)T: Ribosomal protein L14-relatedF: F_UNCLASSIFIEDECOD (1.6)
FA [auth L151]F_UNCLASSIFIEDe7ztaL1511 A: a/b three-layered sandwichesX: Ribosomal protein L13/L15p/L18e/L32eH: Ribosomal proteins L15p and L18e (From Topology)T: Ribosomal proteins L15p and L18eF: F_UNCLASSIFIEDECOD (1.6)
GA [auth L161]F_UNCLASSIFIEDe7ztaL1611 A: a+b complex topologyX: alpha/beta-Hammerhead/Barrel-sandwich hybridH: alpha/beta-Hammerhead/Barrel-sandwich hybridT: Ribosomal protein L10eF: F_UNCLASSIFIEDECOD (1.6)
HA [auth L171]F_UNCLASSIFIEDe7ztaL1711 A: a+b two layersX: Enolase-N/ribosomal proteinH: Prokaryotic ribosomal protein L17 (From Topology)T: Prokaryotic ribosomal protein L17F: F_UNCLASSIFIEDECOD (1.6)
IA [auth L181]F_UNCLASSIFIEDe7ztaL1811 A: mixed a+b and a/bX: Ribonuclease H-likeH: Ribonuclease H-like (From Topology)T: Ribonuclease H-likeF: F_UNCLASSIFIEDECOD (1.6)
JA [auth L191]F_UNCLASSIFIEDe7ztaL1911 A: beta barrelsX: SH3H: SH3T: SH3F: F_UNCLASSIFIEDECOD (1.6)
KA [auth L201]F_UNCLASSIFIEDe7ztaL2011 A: alpha arraysX: PABP domain-likeH: Ribosomal protein L20 (From Topology)T: Ribosomal protein L20F: F_UNCLASSIFIEDECOD (1.6)
LA [auth L211]F_UNCLASSIFIEDe7ztaL2111 A: beta barrelsX: Ribosomal protein L21p (From Topology)H: Ribosomal protein L21p (From Topology)T: Ribosomal protein L21pF: F_UNCLASSIFIEDECOD (1.6)
MA [auth L221]F_UNCLASSIFIEDe7ztaL2211 A: a+b two layersX: Enolase-N/ribosomal proteinH: Ribosomal protein L22 (From Topology)T: Ribosomal protein L22F: F_UNCLASSIFIEDECOD (1.6)
NA [auth L231]F_UNCLASSIFIEDe7ztaL2311 A: a+b two layersX: Alpha-beta plaitsH: Ribosomal proteins S24e, L23 and L15e (From Topology)T: Ribosomal proteins S24e, L23 and L15eF: F_UNCLASSIFIEDECOD (1.6)
OA [auth L241]F_UNCLASSIFIEDe7ztaL2411 A: beta barrelsX: SH3H: SH3T: SH3F: F_UNCLASSIFIEDECOD (1.6)
PA [auth L251]F_UNCLASSIFIEDe7ztaL2511 A: beta barrelsX: Ribosomal protein L25-likeH: Ribosomal protein L25-like (From Topology)T: Ribosomal protein L25-likeF: F_UNCLASSIFIEDECOD (1.6)
QA [auth L271]F_UNCLASSIFIEDe7ztaL2711 A: a+b complex topologyX: alpha/beta-Hammerhead/Barrel-sandwich hybridH: alpha/beta-Hammerhead/Barrel-sandwich hybridT: Ribosomal L27 proteinF: F_UNCLASSIFIEDECOD (1.6)
RA [auth L281]F_UNCLASSIFIEDe7ztaL2811 A: few secondary structure elementsX: Ribosomal protein bL28-related (From Homology)H: Ribosomal protein bL28-relatedT: Ribosomal protein L28F: F_UNCLASSIFIEDECOD (1.6)
TA [auth L301]F_UNCLASSIFIEDe7ztaL3011 A: a+b two layersX: Ribosomal protein L30p/L7e (From Topology)H: Ribosomal protein L30p/L7e (From Topology)T: Ribosomal protein L30p/L7eF: F_UNCLASSIFIEDECOD (1.6)
VA [auth L321]F_UNCLASSIFIEDe7ztaL3211 A: few secondary structure elementsX: Rubredoxin-likeH: Rubredoxin-relatedT: Rubredoxin-relatedF: F_UNCLASSIFIEDECOD (1.6)
WA [auth L331]F_UNCLASSIFIEDe7ztaL3311 A: few secondary structure elementsX: Rubredoxin-likeH: Rubredoxin-relatedT: Rubredoxin-relatedF: F_UNCLASSIFIEDECOD (1.6)
E [auth S051]F_UNCLASSIFIEDe7ztaS0511 A: a+b two layersX: Ribosomal protein S5 domain 2-like (From Topology)H: Ribosomal protein S5 domain 2-like (From Topology)T: Ribosomal protein S5 domain 2-likeF: F_UNCLASSIFIEDECOD (1.6)
E [auth S051]F_UNCLASSIFIEDe7ztaS0512 A: a+b two layersX: dsRBD-likeH: dsRNA-binding domain-like (From Topology)T: dsRNA-binding domain-likeF: F_UNCLASSIFIEDECOD (1.6)
XA [auth L341]F_UNCLASSIFIEDe7ztaL3411 A: extended segmentsX: 50S ribosomal protein L34 (From Topology)H: 50S ribosomal protein L34 (From Topology)T: 50S ribosomal protein L34F: F_UNCLASSIFIEDECOD (1.6)
YA [auth L351]F_UNCLASSIFIEDe7ztaL3511 A: a+b two layersX: Ribosomal protein L35p (From Topology)H: Ribosomal protein L35p (From Topology)T: Ribosomal protein L35pF: F_UNCLASSIFIEDECOD (1.6)
F [auth S061]F_UNCLASSIFIEDe7ztaS0611 A: a+b two layersX: Alpha-beta plaitsH: Ribosomal protein S6 (From Topology)T: Ribosomal protein S6F: F_UNCLASSIFIEDECOD (1.6)
G [auth S071]F_UNCLASSIFIEDe7ztaS0711 A: alpha arraysX: Ribosomal protein S7 (From Topology)H: Ribosomal protein S7 (From Topology)T: Ribosomal protein S7F: F_UNCLASSIFIEDECOD (1.6)
H [auth S081]F_UNCLASSIFIEDe7ztaS0812 A: a+b two layersX: R3H domain-likeH: Ribosomal protein S8, N-terminal domain (From Topology)T: Ribosomal protein S8, N-terminal domainF: F_UNCLASSIFIEDECOD (1.6)
H [auth S081]F_UNCLASSIFIEDe7ztaS0811 A: a+b two layersX: Ribosomal protein S8, C-terminal domain (From Topology)H: Ribosomal protein S8, C-terminal domain (From Topology)T: Ribosomal protein S8, C-terminal domainF: F_UNCLASSIFIEDECOD (1.6)

Protein Family Annotation Pfam Database Homepage

ChainsAccessionNameDescriptionCommentsSource
B [auth S021]PF00318Ribosomal protein S2 (Ribosomal_S2)Ribosomal protein S2- Family
D [auth S041]PF00163Ribosomal protein S4/S9 N-terminal domain (Ribosomal_S4)Ribosomal protein S4/S9 N-terminal domain- Family
D [auth S041]PF01479S4 domain (S4)S4 domainThe S4 domain is a small domain consisting of 60-65 amino acid residues that was detected in the bacterial ribosomal protein S4, eukaryotic ribosomal S9, two families of pseudouridine synthases, a novel family of predicted RNA methylases, a yeast pro ...The S4 domain is a small domain consisting of 60-65 amino acid residues that was detected in the bacterial ribosomal protein S4, eukaryotic ribosomal S9, two families of pseudouridine synthases, a novel family of predicted RNA methylases, a yeast protein containing a pseudouridine synthetase and a deaminase domain, bacterial tyrosyl-tRNA synthetases, and a number of uncharacterized, small proteins that may be involved in translation regulation [1]. The S4 domain probably mediates binding to RNA.
Domain
I [auth S091]PF00380Ribosomal protein S9/S16 (Ribosomal_S9)Ribosomal protein S9/S16- Family
P [auth S161]PF00886Ribosomal protein S16 (Ribosomal_S16)Ribosomal protein S16- Family
U [auth S211]PF01165Ribosomal protein S21 (Ribosomal_S21)Ribosomal protein S21- Family
SA [auth L291]PF00831Ribosomal L29 protein (Ribosomal_L29)Ribosomal L29 protein- Family
UA [auth L311]PF01197Ribosomal protein L31 (Ribosomal_L31)Ribosomal protein L31- Family
ZA [auth L361]PF00444Ribosomal protein L36 (Ribosomal_L36)Ribosomal protein L36- Domain
J [auth S101]PF00338Ribosomal protein S10p/S20e (Ribosomal_S10)Ribosomal protein S10p/S20eThis family includes small ribosomal subunit S10 from prokaryotes and S20 from eukaryotes.Domain
K [auth S111]PF00411Ribosomal protein S11 (Ribosomal_S11)Ribosomal protein S11- Family
L [auth S121]PF00164Ribosomal protein S12/S23 (Ribosom_S12_S23)Ribosomal protein S12/S23- Family
M [auth S131]PF00416Ribosomal protein S13/S18 (Ribosomal_S13)Ribosomal protein S13/S18- Family
N [auth S141]PF00253Ribosomal protein S14p/S29e (Ribosomal_S14)Ribosomal protein S14p/S29e- Family
O [auth S151]PF00312Ribosomal protein S15 (Ribosomal_S15)Ribosomal protein S15- Domain
Q [auth S171]PF00366Ribosomal protein S17 (Ribosomal_S17)Ribosomal protein S17- Domain
R [auth S181]PF01084Ribosomal protein S18 (Ribosomal_S18)Ribosomal protein S18- Family
S [auth S191]PF00203Ribosomal protein S19 (Ribosomal_S19)Ribosomal protein S19- Domain
T [auth S201]PF01649Ribosomal protein S20 (Ribosomal_S20p)Ribosomal protein S20- Family
X [auth L021]PF03947Ribosomal Proteins L2, C-terminal domain (Ribosomal_L2_C)Ribosomal Proteins L2, C-terminal domain- Domain
X [auth L021]PF00181Ribosomal Proteins L2, RNA binding domain (Ribosomal_L2)Ribosomal Proteins L2, RNA binding domain- Domain
Y [auth L031]PF00297Ribosomal protein L3 (Ribosomal_L3)Ribosomal protein L3- Family
Z [auth L041]PF00573Ribosomal protein L4/L1 family (Ribosomal_L4)Ribosomal protein L4/L1 family- Family
AA [auth L051]PF00281Ribosomal protein L5 (Ribosomal_L5)Ribosomal protein L5- Domain
AA [auth L051]PF00673ribosomal L5P family C-terminus (Ribosomal_L5_C)ribosomal L5P family C-terminusThis region is found associated with Pfam:PF00281.Domain
BA [auth L061]PF00347Ribosomal protein L6 (Ribosomal_L6)Ribosomal protein L6- Domain
CA [auth L091]PF01281Ribosomal protein L9, N-terminal domain (Ribosomal_L9_N)Ribosomal protein L9, N-terminal domain- Domain
CA [auth L091]PF03948Ribosomal protein L9, C-terminal domain (Ribosomal_L9_C)Ribosomal protein L9, C-terminal domain- Domain
C [auth S031]PF07650KH domain (KH_2)KH domain- Domain
C [auth S031]PF00189Ribosomal protein S3, C-terminal domain (Ribosomal_S3_C)Ribosomal protein S3, C-terminal domainThis family contains a central domain Pfam:PF00013, hence the amino and carboxyl terminal domains are stored separately. This is a minimal carboxyl-terminal domain. Some are much longer.Domain
DA [auth L131]PF00572Ribosomal protein L13 (Ribosomal_L13)Ribosomal protein L13- Family
EA [auth L141]PF00238Ribosomal protein L14p/L23e (Ribosomal_L14)Ribosomal protein L14p/L23e- Domain
FA [auth L151]PF00828Ribosomal proteins 50S-L15, 50S-L18e, 60S-L27A (Ribosomal_L27A)Ribosomal proteins 50S-L15, 50S-L18e, 60S-L27A- Family
GA [auth L161]PF00252Ribosomal protein L16p/L10e (Ribosomal_L16)Ribosomal protein L16p/L10e- Domain
HA [auth L171]PF01196Ribosomal protein L17 (Ribosomal_L17)Ribosomal protein L17- Family
IA [auth L181]PF00861Ribosomal L18 of archaea, bacteria, mitoch. and chloroplast (Ribosomal_L18p)Ribosomal L18 of archaea, bacteria, mitoch. and chloroplast- Family
JA [auth L191]PF01245Ribosomal protein L19 (Ribosomal_L19)Ribosomal protein L19- Family
KA [auth L201]PF00453Ribosomal protein L20 (Ribosomal_L20)Ribosomal protein L20- Family
LA [auth L211]PF00829Ribosomal prokaryotic L21 protein (Ribosomal_L21p)Ribosomal prokaryotic L21 protein- Family
MA [auth L221]PF00237Ribosomal protein L22p/L17e (Ribosomal_L22)Ribosomal protein L22p/L17eThis family includes L22 from prokaryotes and chloroplasts and L17 from eukaryotes.Domain
NA [auth L231]PF00276Ribosomal protein L23 (Ribosomal_L23)Ribosomal protein L23- Family
OA [auth L241]PF17136Ribosomal proteins 50S L24/mitochondrial 39S L24 (ribosomal_L24)Ribosomal proteins 50S L24/mitochondrial 39S L24- Family
OA [auth L241]PF00467KOW motif (KOW)KOW motif- Family
PA [auth L251]PF01386Ribosomal L25p family (Ribosomal_L25p)Ribosomal L25p familyRibosomal protein L25 is an RNA binding protein, that binds 5S rRNA. This family includes Ctc from B. subtilis Swiss:P14194, which is induced by stress.Domain
QA [auth L271]PF01016Ribosomal L27 protein (Ribosomal_L27)Ribosomal L27 protein- Family
RA [auth L281]PF00830Ribosomal L28 family (Ribosomal_L28)Ribosomal L28 family- Family
TA [auth L301]PF00327Ribosomal protein L30p/L7e (Ribosomal_L30)Ribosomal protein L30p/L7eThis family includes prokaryotic L30 and eukaryotic L7.Domain
VA [auth L321]PF01783Ribosomal L32p protein family (Ribosomal_L32p)Ribosomal L32p protein family- Family
WA [auth L331]PF00471Ribosomal protein L33 (Ribosomal_L33)Ribosomal protein L33- Family
E [auth S051]PF03719Ribosomal protein S5, C-terminal domain (Ribosomal_S5_C)Ribosomal protein S5, C-terminal domain- Domain
E [auth S051]PF00333Ribosomal protein S5, N-terminal domain (Ribosomal_S5)Ribosomal protein S5, N-terminal domain- Domain
XA [auth L341]PF00468Ribosomal protein L34 (Ribosomal_L34)Ribosomal protein L34- Family
YA [auth L351]PF01632Ribosomal protein L35 (Ribosomal_L35p)Ribosomal protein L35- Family
F [auth S061]PF01250Ribosomal protein S6 (Ribosomal_S6)Ribosomal protein S6- Domain
G [auth S071]PF00177Ribosomal protein S7p/S5e (Ribosomal_S7)Ribosomal protein S7p/S5eThis family contains ribosomal protein S7 from prokaryotes and S5 from eukaryotes.Domain
H [auth S081]PF00410Ribosomal protein S8 (Ribosomal_S8)Ribosomal protein S8- Domain

Gene Ontology: Gene Product Annotation Gene Ontology Database Homepage

ChainsPolymerMolecular FunctionBiological ProcessCellular Component
B [auth S021]30S ribosomal protein S2
D [auth S041]30S ribosomal protein S4
I [auth S091]30S ribosomal protein S9
P [auth S161]30S ribosomal protein S16
U [auth S211]30S ribosomal protein S21
SA [auth L291]50S ribosomal protein L29
UA [auth L311]50S ribosomal protein L31
ZA [auth L361]50S ribosomal protein L36
A [auth 16S1]16S ribosomal RNA---
J [auth S101]30S ribosomal protein S10
K [auth S111]30S ribosomal protein S11
L [auth S121]30S ribosomal protein S12
M [auth S131]30S ribosomal protein S13
N [auth S141]30S ribosomal protein S14
O [auth S151]30S ribosomal protein S15
Q [auth S171]30S ribosomal protein S17
R [auth S181]30S ribosomal protein S18
S [auth S191]30S ribosomal protein S19
T [auth S201]30S ribosomal protein S20
V [auth 23S1]23S ribosomal RNA---
W [auth 05S1]5S ribosomal RNA---
X [auth L021]50S ribosomal protein L2
Y [auth L031]50S ribosomal protein L3
Z [auth L041]50S ribosomal protein L4
AA [auth L051]50S ribosomal protein L5
BA [auth L061]50S ribosomal protein L6
CA [auth L091]50S ribosomal protein L9
C [auth S031]30S ribosomal protein S3
DA [auth L131]50S ribosomal protein L13
EA [auth L141]50S ribosomal protein L14
FA [auth L151]50S ribosomal protein L15
GA [auth L161]50S ribosomal protein L16
HA [auth L171]50S ribosomal protein L17
IA [auth L181]50S ribosomal protein L18
JA [auth L191]50S ribosomal protein L19
KA [auth L201]50S ribosomal protein L20
LA [auth L211]50S ribosomal protein L21
MA [auth L221]50S ribosomal protein L22
NA [auth L231]50S ribosomal protein L23
OA [auth L241]50S ribosomal protein L24
PA [auth L251]50S ribosomal protein L25
QA [auth L271]50S ribosomal protein L27
RA [auth L281]50S ribosomal protein L28
TA [auth L301]50S ribosomal protein L30
VA [auth L321]50S ribosomal protein L32
WA [auth L331]50S ribosomal protein L33
E [auth S051]30S ribosomal protein S5
XA [auth L341]50S ribosomal protein L34
YA [auth L351]50S ribosomal protein L35
AB [auth ATR1]tRNA-Cys---
BB [auth PTR1]tRNA-Lys---
CB [auth PQK1]MAAAPQK nascent peptide---
DB [auth ETR1]tRNA-Gln---
EB [auth MRN1]mRNA---
F [auth S061]30S ribosomal protein S6, fully modified isoform
G [auth S071]30S ribosomal protein S7
H [auth S081]30S ribosomal protein S8

InterPro: Protein Family Classification InterPro Database Homepage

ChainsAccessionNameType
B [auth S021]IPR005706Small ribosomal subunit protein uS2, bacteria/mitochondria/plastidFamily
B [auth S021]IPR023591Small ribosomal subunit protein uS2, flavodoxin-like domain superfamilyHomologous Superfamily
B [auth S021]IPR018130Small ribosomal subunit protein uS2, conserved siteConserved Site
B [auth S021]IPR001865Small ribosomal subunit protein uS2Family
D [auth S041]IPR002942RNA-binding S4 domainDomain
D [auth S041]IPR005709Small ribosomal subunit protein uS4, bacterial-typeFamily
D [auth S041]IPR022801Small ribosomal subunit protein uS4Family
D [auth S041]IPR018079Small ribosomal subunit protein uS4, conserved siteConserved Site
D [auth S041]IPR001912Small ribosomal subunit protein uS4, N-terminalDomain
D [auth S041]IPR036986RNA-binding S4 domain superfamilyHomologous Superfamily
I [auth S091]IPR020574Small ribosomal subunit protein uS9, conserved siteConserved Site
I [auth S091]IPR023035Small ribosomal subunit protein uS9, bacterial/plastidFamily
I [auth S091]IPR020568Ribosomal protein uS5 domain 2-type superfamilyHomologous Superfamily
I [auth S091]IPR000754Small ribosomal subunit protein uS9Family
I [auth S091]IPR014721Small ribosomal subunit protein uS5 domain 2-type fold, subgroupHomologous Superfamily
P [auth S161]IPR023803Small ribosomal subunit protein bS16 domain superfamilyHomologous Superfamily
P [auth S161]IPR000307Small ribosomal subunit protein bS16Family
P [auth S161]IPR020592Small ribosomal subunit protein bS16, conserved siteConserved Site
U [auth S211]IPR038380Small ribosomal subunit protein bS21 superfamilyHomologous Superfamily
U [auth S211]IPR018278Small ribosomal subunit protein bS21, conserved siteConserved Site
U [auth S211]IPR001911Small ribosomal subunit protein bS21Family
SA [auth L291]IPR050063Universal ribosomal protein uL29Family
SA [auth L291]IPR001854Large ribosomal subunit protein uL29Family
SA [auth L291]IPR036049Large ribosomal subunit protein uL29 superfamilyHomologous Superfamily
SA [auth L291]IPR018254Large ribosomal subunit protein uL29, conserved siteConserved Site
UA [auth L311]IPR002150Large ribosomal subunit protein bL31 type A/BFamily
UA [auth L311]IPR027491Large ribosomal subunit protein bL31 type AFamily
UA [auth L311]IPR034704Large ribosomal subunit protein bL28/bL31-like superfamilyHomologous Superfamily
UA [auth L311]IPR042105Large ribosomal subunit protein bL31 superfamilyHomologous Superfamily
ZA [auth L361]IPR000473Large ribosomal subunit protein bL36Family
ZA [auth L361]IPR035977Large ribosomal subunit protein bL36 superfamilyHomologous Superfamily
J [auth S101]IPR027486Small ribosomal subunit protein uS10 domainDomain
J [auth S101]IPR036838Small ribosomal subunit protein uS10 domain superfamilyHomologous Superfamily
J [auth S101]IPR018268Small ribosomal subunit protein uS10, conserved siteConserved Site
J [auth S101]IPR001848Small ribosomal subunit protein uS10Family
K [auth S111]IPR001971Small ribosomal subunit protein uS11Family
K [auth S111]IPR019981Small ribosomal subunit protein uS11, bacterial-typeFamily
K [auth S111]IPR036967Small ribosomal subunit protein uS11 superfamilyHomologous Superfamily
K [auth S111]IPR018102Small ribosomal subunit protein uS11, conserved siteConserved Site
L [auth S121]IPR005679Ribosomal protein uS12, bacterial-typeFamily
L [auth S121]IPR006032Small ribosomal subunit protein uS12Family
L [auth S121]IPR012340Nucleic acid-binding, OB-foldHomologous Superfamily
M [auth S131]IPR018269Small ribosomal subunit protein uS13, conserved siteConserved Site
M [auth S131]IPR027437Small ribosomal subunit protein uS13, C-terminalHomologous Superfamily
M [auth S131]IPR001892Small ribosomal subunit protein uS13Family
M [auth S131]IPR010979Small ribosomal subunit protein uS13-like, H2THHomologous Superfamily
M [auth S131]IPR019980Small ribosomal subunit protein uS13, bacterial-typeFamily
N [auth S141]IPR001209Small ribosomal subunit protein uS14Family
N [auth S141]IPR018271Small ribosomal subunit protein uS14, conserved siteConserved Site
N [auth S141]IPR023036Small ribosomal subunit protein uS14, bacteria/plastidFamily
O [auth S151]IPR009068uS15/NS1, RNA-binding domain superfamilyHomologous Superfamily
O [auth S151]IPR000589Small ribosomal subunit protein uS15Family
O [auth S151]IPR005290Small ribosomal subunit protein uS15, bacterial-typeFamily
Q [auth S171]IPR019979Small ribosomal subunit protein uS17, conserved siteConserved Site
Q [auth S171]IPR019984Small ribosomal subunit protein uS17, bacteria/chloroplastFamily
Q [auth S171]IPR012340Nucleic acid-binding, OB-foldHomologous Superfamily
Q [auth S171]IPR000266Small ribosomal subunit protein uS17Family
R [auth S181]IPR001648Small ribosomal subunit protein bS18Family
R [auth S181]IPR018275Small ribosomal subunit protein bS18, conserved siteConserved Site
R [auth S181]IPR036870Small ribosomal subunit protein bS18 superfamilyHomologous Superfamily
S [auth S191]IPR002222Small ribosomal subunit protein uS19Family
S [auth S191]IPR005732Small ribosomal subunit protein uS19, bacterial-typeFamily
S [auth S191]IPR023575Small ribosomal subunit protein uS19, superfamilyHomologous Superfamily
S [auth S191]IPR020934Small ribosomal subunit protein uS19, conserved siteConserved Site
T [auth S201]IPR036510Small ribosomal subunit protein bS20 superfamilyHomologous Superfamily
T [auth S201]IPR002583Small ribosomal subunit protein bS20Family
X [auth L021]IPR022669Large ribosomal subunit protein uL2, C-terminalDomain
X [auth L021]IPR014722Large ribosomal subunit protein uL2, domain 2Homologous Superfamily
X [auth L021]IPR008991Translation protein SH3-like domain superfamilyHomologous Superfamily
X [auth L021]IPR022671Large ribosomal subunit protein uL2, conserved siteConserved Site
X [auth L021]IPR005880Large ribosomal subunit protein uL2, bacterial/organellar-typeFamily
X [auth L021]IPR012340Nucleic acid-binding, OB-foldHomologous Superfamily
X [auth L021]IPR022666Large ribosomal subunit protein uL2, RNA-binding domainDomain
X [auth L021]IPR014726Large ribosomal subunit protein uL2, domain 3Homologous Superfamily
X [auth L021]IPR002171Large ribosomal subunit protein uL2Family
Y [auth L031]IPR019926Large ribosomal subunit protein uL3, conserved siteConserved Site
Y [auth L031]IPR019927Large ribosomal subunit protein uL3, bacterial/organelle-typeFamily
Y [auth L031]IPR009000Translation protein, beta-barrel domain superfamilyHomologous Superfamily
Y [auth L031]IPR000597Large ribosomal subunit protein uL3Family
Z [auth L041]IPR013005Large ribosomal subunit protein uL4-likeFamily
Z [auth L041]IPR002136Large ribosomal subunit protein uL4Family
Z [auth L041]IPR023574Large ribosomal subunit protein uL4 domain superfamilyHomologous Superfamily
AA [auth L051]IPR020929Large ribosomal subunit protein uL5, conserved siteConserved Site
AA [auth L051]IPR022803Large ribosomal subunit protein uL5 domain superfamilyHomologous Superfamily
AA [auth L051]IPR031309Large ribosomal subunit protein uL5, C-terminalDomain
AA [auth L051]IPR031310Large ribosomal subunit protein uL5, N-terminalDomain
AA [auth L051]IPR020930Large ribosomal subunit protein uL5, bacterial-typeFamily
AA [auth L051]IPR002132Large ribosomal subunit protein uL5Family
BA [auth L061]IPR036789Large ribosomal subunit protein uL6-like, alpha-beta domain superfamilyHomologous Superfamily
BA [auth L061]IPR019906Large ribosomal subunit protein uL6, bacterial-typeFamily
BA [auth L061]IPR020040Large ribosomal subunit protein uL6, alpha-beta domainDomain
BA [auth L061]IPR000702Large ribosomal subunit protein uL6-likeFamily
BA [auth L061]IPR002358Large ribosomal subunit protein uL6, conserved siteConserved Site
CA [auth L091]IPR036935Large ribosomal subunit protein bL9, N-terminal domain superfamilyHomologous Superfamily
CA [auth L091]IPR020069Large ribosomal subunit protein bL9, C-terminalDomain
CA [auth L091]IPR020070Large ribosomal subunit protein bL9, N-terminalDomain
CA [auth L091]IPR009027Large ribosomal subunit protein bL9/RNase H1, N-terminalHomologous Superfamily
CA [auth L091]IPR020594Large ribosomal subunit protein bL9, bacteria/chloroplastFamily
CA [auth L091]IPR036791Large ribosomal subunit protein bL9, C-terminal domain superfamilyHomologous Superfamily
CA [auth L091]IPR000244Large ribosomal subunit protein bL9Family
C [auth S031]IPR001351Small ribosomal subunit protein uS3, C-terminalDomain
C [auth S031]IPR009019K homology domain superfamily, prokaryotic typeHomologous Superfamily
C [auth S031]IPR004087K Homology domainDomain
C [auth S031]IPR004044K Homology domain, type 2Domain
C [auth S031]IPR015946K homology domain-like, alpha/betaHomologous Superfamily
C [auth S031]IPR036419Ribosomal protein S3, C-terminal domain superfamilyHomologous Superfamily
C [auth S031]IPR005704Small ribosomal subunit protein uS3, bacterial-typeFamily
C [auth S031]IPR018280Small ribosomal subunit protein uS3, conserved siteConserved Site
DA [auth L131]IPR023563Large ribosomal subunit protein uL13, conserved siteConserved Site
DA [auth L131]IPR005822Large ribosomal subunit protein uL13Family
DA [auth L131]IPR036899Large ribosomal subunit protein uL13 superfamilyHomologous Superfamily
DA [auth L131]IPR005823Large ribosomal subunit protein uL13, bacterial-typeFamily
EA [auth L141]IPR005745Large ribosomal subunit protein uL14, bacterial-typeFamily
EA [auth L141]IPR036853Large ribosomal subunit protein uL14 superfamilyHomologous Superfamily
EA [auth L141]IPR000218Large ribosomal subunit protein uL14Family
EA [auth L141]IPR019972Large ribosomal subunit protein uL14, conserved siteConserved Site
FA [auth L151]IPR005749Large ribosomal subunit protein uL15, bacterial-typeFamily
FA [auth L151]IPR021131Large ribosomal subunit protein uL15/eL18Domain
FA [auth L151]IPR030878Large ribosomal subunit protein uL15Family
FA [auth L151]IPR001196Large ribosomal subunit protein uL15, conserved siteConserved Site
FA [auth L151]IPR036227Large ribosomal subunit protein uL15/eL18 superfamilyHomologous Superfamily
GA [auth L161]IPR036920Large ribosomal subunit protein uL16 superfamilyHomologous Superfamily
GA [auth L161]IPR020798Large ribosomal subunit protein uL16, conserved siteConserved Site
GA [auth L161]IPR000114Large ribosomal subunit protein uL16, bacterial-typeFamily
GA [auth L161]IPR016180Large ribosomal subunit protein uL16 domainDomain
GA [auth L161]IPR047873Large ribosomal subunit protein uL16Family
HA [auth L171]IPR036373Large ribosomal subunit protein bL17 superfamilyHomologous Superfamily
HA [auth L171]IPR047859Large ribosomal subunit protein bL17, conserved siteConserved Site
HA [auth L171]IPR000456Large ribosomal subunit protein bL17Family
IA [auth L181]IPR005484Large ribosomal subunit protein uL18Family
IA [auth L181]IPR004389Large ribosomal subunit protein uL18, bacterial-typeFamily
JA [auth L191]IPR001857Large ribosomal subunit protein bL19Family
JA [auth L191]IPR038657Large ribosomal subunit protein bL19 superfamilyHomologous Superfamily
JA [auth L191]IPR018257Large ribosomal subunit protein bL19, conserved siteConserved Site
JA [auth L191]IPR008991Translation protein SH3-like domain superfamilyHomologous Superfamily
KA [auth L201]IPR049946Large ribosomal subunit protein bL20, conserved siteConserved Site
KA [auth L201]IPR035566Ribosomal protein bL20, C-terminalHomologous Superfamily
KA [auth L201]IPR005813Large ribosomal subunit protein bL20Family
LA [auth L211]IPR028909Large ribosomal subunit protein bL21-likeFamily
LA [auth L211]IPR001787Large ribosomal subunit protein bL21Family
LA [auth L211]IPR036164Large ribosomal subunit protein bL21-like superfamilyHomologous Superfamily
LA [auth L211]IPR018258Large ribosomal subunit protein bL21, conserved siteConserved Site
MA [auth L221]IPR047867Large ribosomal subunit protein uL22, bacterial/organelle-typeFamily
MA [auth L221]IPR036394Ribosomal protein uL22 superfamilyHomologous Superfamily
MA [auth L221]IPR001063Large ribosomal subunit protein uL22Family
MA [auth L221]IPR018260Large ribosomal subunit protein uL22, conserved siteConserved Site
MA [auth L221]IPR005727Large ribosomal subunit protein uL22, bacterial/chloroplast-typeFamily
NA [auth L231]IPR012678Ribosomal protein uL23/eL15/eS24 core domain superfamilyHomologous Superfamily
NA [auth L231]IPR012677Nucleotide-binding alpha-beta plait domain superfamilyHomologous Superfamily
NA [auth L231]IPR001014Large ribosomal subunit protein uL23, conserved siteConserved Site
NA [auth L231]IPR013025Large ribosomal subunit protein uL23-likeFamily
OA [auth L241]IPR014722Large ribosomal subunit protein uL2, domain 2Homologous Superfamily
OA [auth L241]IPR008991Translation protein SH3-like domain superfamilyHomologous Superfamily
OA [auth L241]IPR003256Large ribosomal subunit protein uL24Family
OA [auth L241]IPR041988Large ribosomal subunit protein uL24, KOW domainDomain
OA [auth L241]IPR005824KOWDomain
OA [auth L241]IPR005825Large ribosomal subunit protein uL24, conserved siteConserved Site
PA [auth L251]IPR020055Ribosomal protein bL25, short-formFamily
PA [auth L251]IPR029751Large ribosomal subunit protein bL25, L25 domainDomain
PA [auth L251]IPR020056Large ribosomal subunit protein bL25/Gln-tRNA synthetase, N-terminalHomologous Superfamily
PA [auth L251]IPR050070Bacterial ribosomal protein bL25Family
PA [auth L251]IPR011035Large ribosomal subunit protein bL25/Gln-tRNA synthetase, anti-codon-binding domain superfamilyHomologous Superfamily
QA [auth L271]IPR001684Large ribosomal subunit protein bL27Family
QA [auth L271]IPR018261Large ribosomal subunit protein bL27, conserved siteConserved Site
RA [auth L281]IPR001383Large ribosomal subunit protein bL28, bacterial-typeFamily
RA [auth L281]IPR037147Large ribosomal subunit protein bL28 superfamilyHomologous Superfamily
RA [auth L281]IPR026569Large ribosomal subunit protein bL28Family
RA [auth L281]IPR034704Large ribosomal subunit protein bL28/bL31-like superfamilyHomologous Superfamily
TA [auth L301]IPR036919Large ribosomal subunit protein uL30, ferredoxin-like fold domain superfamilyHomologous Superfamily
TA [auth L301]IPR005996Large ribosomal subunit protein uL30, bacterial-typeFamily
TA [auth L301]IPR016082Large ribosomal subunit protein uL30-like, ferredoxin-like fold domainDomain
TA [auth L301]IPR018038Large ribosomal subunit protein uL30, conserved siteConserved Site
VA [auth L321]IPR002677Large ribosomal subunit protein bL32Family
VA [auth L321]IPR011332Zinc-binding ribosomal proteinHomologous Superfamily
VA [auth L321]IPR044957Large ribosomal subunit protein bL32, bacterial typeFamily
WA [auth L331]IPR011332Zinc-binding ribosomal proteinHomologous Superfamily
WA [auth L331]IPR038584Large ribosomal subunit protein bL33 superfamilyHomologous Superfamily
WA [auth L331]IPR001705Large ribosomal subunit protein bL33Family
WA [auth L331]IPR018264Large ribosomal subunit protein bL33, conserved siteConserved Site
E [auth S051]IPR000851Small ribosomal subunit protein uS5Family
E [auth S051]IPR005324Small ribosomal subunit protein uS5, C-terminalDomain
E [auth S051]IPR013810Small ribosomal subunit protein uS5, N-terminalDomain
E [auth S051]IPR020568Ribosomal protein uS5 domain 2-type superfamilyHomologous Superfamily
E [auth S051]IPR018192Small ribosomal subunit protein uS5, N-terminal, conserved siteConserved Site
E [auth S051]IPR005712Small ribosomal subunit protein uS5, bacterial-typeFamily
E [auth S051]IPR014721Small ribosomal subunit protein uS5 domain 2-type fold, subgroupHomologous Superfamily
XA [auth L341]IPR020939Large ribosomal subunit protein bL34, conserved siteConserved Site
XA [auth L341]IPR000271Large ribosomal subunit protein bL34Family
YA [auth L351]IPR021137Large ribosomal subunit protein bL35-likeFamily
YA [auth L351]IPR018265Large ribosomal subunit protein bL35, conserved siteConserved Site
YA [auth L351]IPR001706Large ribosomal subunit protein bL35Family
YA [auth L351]IPR037229Large ribosomal subunit protein bL35 superfamilyHomologous Superfamily
F [auth S061]IPR020815Small ribosomal subunit protein bS6, conserved siteConserved Site
F [auth S061]IPR000529Small ribosomal subunit protein bS6Family
F [auth S061]IPR020814Small ribosomal subunit protein bS6, plastid/chloroplastFamily
F [auth S061]IPR035980Small ribosomal subunit protein bS6 superfamilyHomologous Superfamily
F [auth S061]IPR014717Translation elongation factor EF1B/small ribosomal subunit protein bS6Homologous Superfamily
G [auth S071]IPR020606Small ribosomal subunit protein uS7, conserved siteConserved Site
G [auth S071]IPR036823Small ribosomal subunit protein uS7 domain superfamilyHomologous Superfamily
G [auth S071]IPR000235Small ribosomal subunit protein uS7Family
G [auth S071]IPR005717Small ribosomal subunit protein uS7, bacterial/organellar-typeFamily
G [auth S071]IPR023798Small ribosomal subunit protein uS7 domainDomain
H [auth S081]IPR000630Small ribosomal subunit protein uS8Family
H [auth S081]IPR047863Small ribosomal subunit protein uS8, conserved siteConserved Site
H [auth S081]IPR035987Small ribosomal subunit protein uS8 superfamilyHomologous Superfamily

Protein Modification Annotation

Modified Residue(s)
ChainResidue(s)Description
A [auth 16S1]2MG Parent Component: G

A [auth 16S1]4OC Parent Component: C

A [auth 16S1]5MC Parent Component: C

A [auth 16S1]G7M Parent Component: G

A [auth 16S1]MA6 Parent Component: A

A [auth 16S1]PSU Parent Component: U

A [auth 16S1]UR3 Parent Component: U

L [auth S121]D2T Parent Component: ASP

V [auth 23S1]1MG Parent Component: G

V [auth 23S1]2MA Parent Component: A

V [auth 23S1]2MG Parent Component: G

V [auth 23S1]3TD Parent Component: U

V [auth 23S1]5MC Parent Component: C

V [auth 23S1]5MU Parent Component: U

V [auth 23S1]6MZ Parent Component: A

V [auth 23S1]G7M Parent Component: G

V [auth 23S1]H2U Parent Component: U

V [auth 23S1]OMC Parent Component: C

V [auth 23S1]OMG Parent Component: G

V [auth 23S1]OMU Parent Component: U

V [auth 23S1]PSU Parent Component: U

Y [auth L031]MEQ Parent Component: GLN

RESIDAA0071

PSI-MOD :  N5-methyl-L-glutamine MOD:00080
GA [auth L161]4D4 Parent Component: ARG

RESIDAA0071

AB [auth ATR1]4SU Parent Component: U

RESIDAA0071

AB [auth ATR1]5MU Parent Component: U

RESIDAA0071

AB [auth ATR1]MIA Parent Component: A

RESIDAA0071

AB [auth ATR1]PSU Parent Component: U

RESIDAA0071

BB [auth PTR1]5MU Parent Component: U

RESIDAA0071

BB [auth PTR1]G7M Parent Component: G

RESIDAA0071

BB [auth PTR1]H2U Parent Component: U

RESIDAA0071

BB [auth PTR1]PSU Parent Component: U

RESIDAA0071

BB [auth PTR1]T6A Parent Component: A

RESIDAA0071

BB [auth PTR1]U8U Parent Component: U

RESIDAA0071

DB [auth ETR1]2MA Parent Component: A

RESIDAA0071

DB [auth ETR1]4SU Parent Component: U

RESIDAA0071

DB [auth ETR1]5MU Parent Component: U

RESIDAA0071

DB [auth ETR1]H2U Parent Component: U

RESIDAA0071

DB [auth ETR1]OMG Parent Component: G

RESIDAA0071

DB [auth ETR1]OMU Parent Component: U

RESIDAA0071

DB [auth ETR1]PSU Parent Component: U

RESIDAA0071