7ZTA
Structure of an Escherichia coli 70S ribosome stalled by Tetracenomycin X during translation of an MAAAPQK(C) peptide
Domain Annotation: ECOD Classification ECOD Database Homepage
Chains | Family Name | Domain Identifier | Architecture | Possible Homology | Homology | Topology | Family | Provenance Source (Version) |
---|---|---|---|---|---|---|---|---|
B [auth S021] | F_UNCLASSIFIED | e7ztaS0211 | A: a/b three-layered sandwiches | X: Flavodoxin-like | H: Ribosomal protein S2/SIS domain (From Topology) | T: Ribosomal protein S2/SIS domain | F: F_UNCLASSIFIED | ECOD (1.6) |
D [auth S041] | F_UNCLASSIFIED | e7ztaS0411 | A: a+b two layers | X: beta-Grasp | H: Ubiquitin-related | T: Alpha-L RNA-binding motif | F: F_UNCLASSIFIED | ECOD (1.6) |
I [auth S091] | F_UNCLASSIFIED | e7ztaS0911 | A: a+b two layers | X: Ribosomal protein S5 domain 2-like (From Topology) | H: Ribosomal protein S5 domain 2-like (From Topology) | T: Ribosomal protein S5 domain 2-like | F: F_UNCLASSIFIED | ECOD (1.6) |
P [auth S161] | F_UNCLASSIFIED | e7ztaS1611 | A: a+b two layers | X: Ribosomal protein S16 (From Topology) | H: Ribosomal protein S16 (From Topology) | T: Ribosomal protein S16 | F: F_UNCLASSIFIED | ECOD (1.6) |
U [auth S211] | F_UNCLASSIFIED | e7ztaS2111 | A: extended segments | X: 30S ribosomal protein S21 (From Topology) | H: 30S ribosomal protein S21 (From Topology) | T: 30S ribosomal protein S21 | F: F_UNCLASSIFIED | ECOD (1.6) |
SA [auth L291] | F_UNCLASSIFIED | e7ztaL2911 | A: alpha bundles | X: Long alpha-hairpin | H: Ribosomal protein L29 (L29p) (From Topology) | T: Ribosomal protein L29 (L29p) | F: F_UNCLASSIFIED | ECOD (1.6) |
UA [auth L311] | F_UNCLASSIFIED | e7ztaL3111 | A: few secondary structure elements | X: Ribosomal protein L31p (From Topology) | H: Ribosomal protein L31p (From Topology) | T: Ribosomal protein L31p | F: F_UNCLASSIFIED | ECOD (1.6) |
ZA [auth L361] | F_UNCLASSIFIED | e7ztaL3611 | A: few secondary structure elements | X: Ribosomal protein L36 (From Topology) | H: Ribosomal protein L36 (From Topology) | T: Ribosomal protein L36 | F: F_UNCLASSIFIED | ECOD (1.6) |
J [auth S101] | F_UNCLASSIFIED | e7ztaS1011 | A: a+b two layers | X: Alpha-beta plaits | H: Ribosomal protein S10 (From Topology) | T: Ribosomal protein S10 | F: F_UNCLASSIFIED | ECOD (1.6) |
K [auth S111] | F_UNCLASSIFIED | e7ztaS1111 | A: mixed a+b and a/b | X: Ribonuclease H-like | H: Ribonuclease H-like (From Topology) | T: Ribonuclease H-like | F: F_UNCLASSIFIED | ECOD (1.6) |
L [auth S121] | F_UNCLASSIFIED | e7ztaS1211 | A: beta barrels | X: OB-fold | H: Nucleic acid-binding proteins (From Topology) | T: Nucleic acid-binding proteins | F: F_UNCLASSIFIED | ECOD (1.6) |
M [auth S131] | F_UNCLASSIFIED | e7ztaS1311 | A: alpha arrays | X: HhH/H2TH | H: H2TH (From Topology) | T: H2TH | F: F_UNCLASSIFIED | ECOD (1.6) |
N [auth S141] | F_UNCLASSIFIED | e7ztaS1411 | A: few secondary structure elements | X: Glucocorticoid receptor-like | H: LIM domain-like | T: LIM domain-like | F: F_UNCLASSIFIED | ECOD (1.6) |
O [auth S151] | F_UNCLASSIFIED | e7ztaS1511 | A: alpha arrays | X: S15/NS1 RNA-binding domain (From Topology) | H: S15/NS1 RNA-binding domain (From Topology) | T: S15/NS1 RNA-binding domain | F: F_UNCLASSIFIED | ECOD (1.6) |
Q [auth S171] | F_UNCLASSIFIED | e7ztaS1711 | A: beta barrels | X: OB-fold | H: Nucleic acid-binding proteins (From Topology) | T: Nucleic acid-binding proteins | F: F_UNCLASSIFIED | ECOD (1.6) |
R [auth S181] | F_UNCLASSIFIED | e7ztaS1811 | A: alpha arrays | X: HTH | H: HTH | T: tri-helical | F: F_UNCLASSIFIED | ECOD (1.6) |
S [auth S191] | F_UNCLASSIFIED | e7ztaS1911 | A: a+b two layers | X: Ribosomal protein S19 (From Topology) | H: Ribosomal protein S19 (From Topology) | T: Ribosomal protein S19 | F: F_UNCLASSIFIED | ECOD (1.6) |
T [auth S201] | F_UNCLASSIFIED | e7ztaS2011 | A: alpha bundles | X: Spectrin repeat-like | H: Ribosomal protein S20 (From Topology) | T: Ribosomal protein S20 | F: F_UNCLASSIFIED | ECOD (1.6) |
X [auth L021] | F_UNCLASSIFIED | e7ztaL0211 | A: beta barrels | X: OB-fold | H: Nucleic acid-binding proteins (From Topology) | T: Nucleic acid-binding proteins | F: F_UNCLASSIFIED | ECOD (1.6) |
X [auth L021] | F_UNCLASSIFIED | e7ztaL0212 | A: beta barrels | X: SH3 | H: SH3 | T: SH3 | F: F_UNCLASSIFIED | ECOD (1.6) |
Y [auth L031] | F_UNCLASSIFIED | e7ztaL0311 | A: beta barrels | X: cradle loop barrel | H: RIFT-related | T: Alanine racemase-C | F: F_UNCLASSIFIED | ECOD (1.6) |
Z [auth L041] | F_UNCLASSIFIED | e7ztaL0411 | A: a/b three-layered sandwiches | X: Ribosomal protein L4 (From Topology) | H: Ribosomal protein L4 (From Topology) | T: Ribosomal protein L4 | F: F_UNCLASSIFIED | ECOD (1.6) |
AA [auth L051] | F_UNCLASSIFIED | e7ztaL0511 | A: a+b two layers | X: Ribosomal protein L5 (From Topology) | H: Ribosomal protein L5 (From Topology) | T: Ribosomal protein L5 | F: F_UNCLASSIFIED | ECOD (1.6) |
BA [auth L061] | F_UNCLASSIFIED | e7ztaL0611 | A: a+b two layers | X: Ribosomal protein L6 (From Topology) | H: Ribosomal protein L6 (From Topology) | T: Ribosomal protein L6 | F: F_UNCLASSIFIED | ECOD (1.6) |
CA [auth L091] | F_UNCLASSIFIED | e7ztaL0911 | A: a+b two layers | X: L9 N-domain-like | H: L9 N-domain-like (From Topology) | T: L9 N-domain-like | F: F_UNCLASSIFIED | ECOD (1.6) |
CA [auth L091] | F_UNCLASSIFIED | e7ztaL0912 | A: a+b two layers | X: Ribosomal protein L9 C-domain (From Topology) | H: Ribosomal protein L9 C-domain (From Topology) | T: Ribosomal protein L9 C-domain | F: F_UNCLASSIFIED | ECOD (1.6) |
C [auth S031] | F_UNCLASSIFIED | e7ztaS0312 | A: a+b two layers | X: T-fold | H: Ribosomal protein S3-C (From Topology) | T: Ribosomal protein S3-C | F: F_UNCLASSIFIED | ECOD (1.6) |
C [auth S031] | F_UNCLASSIFIED | e7ztaS0311 | A: a+b two layers | X: Alpha-lytic protease prodomain-like | H: KH-domains | T: Prokaryotic type KH domain (KH-domain type II) | F: F_UNCLASSIFIED | ECOD (1.6) |
DA [auth L131] | F_UNCLASSIFIED | e7ztaL1311 | A: a/b three-layered sandwiches | X: Ribosomal protein L13/L15p/L18e/L32e | H: Ribosomal protein L13 and L16-A (From Topology) | T: Ribosomal protein L13 and L16-A | F: F_UNCLASSIFIED | ECOD (1.6) |
EA [auth L141] | F_UNCLASSIFIED | e7ztaL1411 | A: beta barrels | X: Ribosomal protein L14-like | H: Ribosomal protein L14-related (From Topology) | T: Ribosomal protein L14-related | F: F_UNCLASSIFIED | ECOD (1.6) |
FA [auth L151] | F_UNCLASSIFIED | e7ztaL1511 | A: a/b three-layered sandwiches | X: Ribosomal protein L13/L15p/L18e/L32e | H: Ribosomal proteins L15p and L18e (From Topology) | T: Ribosomal proteins L15p and L18e | F: F_UNCLASSIFIED | ECOD (1.6) |
GA [auth L161] | F_UNCLASSIFIED | e7ztaL1611 | A: a+b complex topology | X: alpha/beta-Hammerhead/Barrel-sandwich hybrid | H: alpha/beta-Hammerhead/Barrel-sandwich hybrid | T: Ribosomal protein L10e | F: F_UNCLASSIFIED | ECOD (1.6) |
HA [auth L171] | F_UNCLASSIFIED | e7ztaL1711 | A: a+b two layers | X: Enolase-N/ribosomal protein | H: Prokaryotic ribosomal protein L17 (From Topology) | T: Prokaryotic ribosomal protein L17 | F: F_UNCLASSIFIED | ECOD (1.6) |
IA [auth L181] | F_UNCLASSIFIED | e7ztaL1811 | A: mixed a+b and a/b | X: Ribonuclease H-like | H: Ribonuclease H-like (From Topology) | T: Ribonuclease H-like | F: F_UNCLASSIFIED | ECOD (1.6) |
JA [auth L191] | F_UNCLASSIFIED | e7ztaL1911 | A: beta barrels | X: SH3 | H: SH3 | T: SH3 | F: F_UNCLASSIFIED | ECOD (1.6) |
KA [auth L201] | F_UNCLASSIFIED | e7ztaL2011 | A: alpha arrays | X: PABP domain-like | H: Ribosomal protein L20 (From Topology) | T: Ribosomal protein L20 | F: F_UNCLASSIFIED | ECOD (1.6) |
LA [auth L211] | F_UNCLASSIFIED | e7ztaL2111 | A: beta barrels | X: Ribosomal protein L21p (From Topology) | H: Ribosomal protein L21p (From Topology) | T: Ribosomal protein L21p | F: F_UNCLASSIFIED | ECOD (1.6) |
MA [auth L221] | F_UNCLASSIFIED | e7ztaL2211 | A: a+b two layers | X: Enolase-N/ribosomal protein | H: Ribosomal protein L22 (From Topology) | T: Ribosomal protein L22 | F: F_UNCLASSIFIED | ECOD (1.6) |
NA [auth L231] | F_UNCLASSIFIED | e7ztaL2311 | A: a+b two layers | X: Alpha-beta plaits | H: Ribosomal proteins S24e, L23 and L15e (From Topology) | T: Ribosomal proteins S24e, L23 and L15e | F: F_UNCLASSIFIED | ECOD (1.6) |
OA [auth L241] | F_UNCLASSIFIED | e7ztaL2411 | A: beta barrels | X: SH3 | H: SH3 | T: SH3 | F: F_UNCLASSIFIED | ECOD (1.6) |
PA [auth L251] | F_UNCLASSIFIED | e7ztaL2511 | A: beta barrels | X: Ribosomal protein L25-like | H: Ribosomal protein L25-like (From Topology) | T: Ribosomal protein L25-like | F: F_UNCLASSIFIED | ECOD (1.6) |
QA [auth L271] | F_UNCLASSIFIED | e7ztaL2711 | A: a+b complex topology | X: alpha/beta-Hammerhead/Barrel-sandwich hybrid | H: alpha/beta-Hammerhead/Barrel-sandwich hybrid | T: Ribosomal L27 protein | F: F_UNCLASSIFIED | ECOD (1.6) |
RA [auth L281] | F_UNCLASSIFIED | e7ztaL2811 | A: few secondary structure elements | X: Ribosomal protein bL28-related (From Homology) | H: Ribosomal protein bL28-related | T: Ribosomal protein L28 | F: F_UNCLASSIFIED | ECOD (1.6) |
TA [auth L301] | F_UNCLASSIFIED | e7ztaL3011 | A: a+b two layers | X: Ribosomal protein L30p/L7e (From Topology) | H: Ribosomal protein L30p/L7e (From Topology) | T: Ribosomal protein L30p/L7e | F: F_UNCLASSIFIED | ECOD (1.6) |
VA [auth L321] | F_UNCLASSIFIED | e7ztaL3211 | A: few secondary structure elements | X: Rubredoxin-like | H: Rubredoxin-related | T: Rubredoxin-related | F: F_UNCLASSIFIED | ECOD (1.6) |
WA [auth L331] | F_UNCLASSIFIED | e7ztaL3311 | A: few secondary structure elements | X: Rubredoxin-like | H: Rubredoxin-related | T: Rubredoxin-related | F: F_UNCLASSIFIED | ECOD (1.6) |
E [auth S051] | F_UNCLASSIFIED | e7ztaS0511 | A: a+b two layers | X: Ribosomal protein S5 domain 2-like (From Topology) | H: Ribosomal protein S5 domain 2-like (From Topology) | T: Ribosomal protein S5 domain 2-like | F: F_UNCLASSIFIED | ECOD (1.6) |
E [auth S051] | F_UNCLASSIFIED | e7ztaS0512 | A: a+b two layers | X: dsRBD-like | H: dsRNA-binding domain-like (From Topology) | T: dsRNA-binding domain-like | F: F_UNCLASSIFIED | ECOD (1.6) |
XA [auth L341] | F_UNCLASSIFIED | e7ztaL3411 | A: extended segments | X: 50S ribosomal protein L34 (From Topology) | H: 50S ribosomal protein L34 (From Topology) | T: 50S ribosomal protein L34 | F: F_UNCLASSIFIED | ECOD (1.6) |
YA [auth L351] | F_UNCLASSIFIED | e7ztaL3511 | A: a+b two layers | X: Ribosomal protein L35p (From Topology) | H: Ribosomal protein L35p (From Topology) | T: Ribosomal protein L35p | F: F_UNCLASSIFIED | ECOD (1.6) |
F [auth S061] | F_UNCLASSIFIED | e7ztaS0611 | A: a+b two layers | X: Alpha-beta plaits | H: Ribosomal protein S6 (From Topology) | T: Ribosomal protein S6 | F: F_UNCLASSIFIED | ECOD (1.6) |
G [auth S071] | F_UNCLASSIFIED | e7ztaS0711 | A: alpha arrays | X: Ribosomal protein S7 (From Topology) | H: Ribosomal protein S7 (From Topology) | T: Ribosomal protein S7 | F: F_UNCLASSIFIED | ECOD (1.6) |
H [auth S081] | F_UNCLASSIFIED | e7ztaS0812 | A: a+b two layers | X: R3H domain-like | H: Ribosomal protein S8, N-terminal domain (From Topology) | T: Ribosomal protein S8, N-terminal domain | F: F_UNCLASSIFIED | ECOD (1.6) |
H [auth S081] | F_UNCLASSIFIED | e7ztaS0811 | A: a+b two layers | X: Ribosomal protein S8, C-terminal domain (From Topology) | H: Ribosomal protein S8, C-terminal domain (From Topology) | T: Ribosomal protein S8, C-terminal domain | F: F_UNCLASSIFIED | ECOD (1.6) |
Protein Family Annotation Pfam Database Homepage
Gene Ontology: Gene Product Annotation Gene Ontology Database Homepage
InterPro: Protein Family Classification InterPro Database Homepage
Protein Modification Annotation
Modified Residue(s) | ||
---|---|---|
Chain | Residue(s) | Description |
A [auth 16S1] | 2MG | Parent Component: G |
A [auth 16S1] | 4OC | Parent Component: C |
A [auth 16S1] | 5MC | Parent Component: C |
A [auth 16S1] | G7M | Parent Component: G |
A [auth 16S1] | MA6 | Parent Component: A |
A [auth 16S1] | PSU | Parent Component: U |
A [auth 16S1] | UR3 | Parent Component: U |
L [auth S121] | D2T | Parent Component: ASP |
V [auth 23S1] | 1MG | Parent Component: G |
V [auth 23S1] | 2MA | Parent Component: A |
V [auth 23S1] | 2MG | Parent Component: G |
V [auth 23S1] | 3TD | Parent Component: U |
V [auth 23S1] | 5MC | Parent Component: C |
V [auth 23S1] | 5MU | Parent Component: U |
V [auth 23S1] | 6MZ | Parent Component: A |
V [auth 23S1] | G7M | Parent Component: G |
V [auth 23S1] | H2U | Parent Component: U |
V [auth 23S1] | OMC | Parent Component: C |
V [auth 23S1] | OMG | Parent Component: G |
V [auth 23S1] | OMU | Parent Component: U |
V [auth 23S1] | PSU | Parent Component: U |
Y [auth L031] | MEQ | Parent Component: GLN :  AA0071 :  N5-methyl-L-glutamine MOD:00080 |
GA [auth L161] | 4D4 | Parent Component: ARG :  AA0071 |
AB [auth ATR1] | 4SU | Parent Component: U :  AA0071 |
AB [auth ATR1] | 5MU | Parent Component: U :  AA0071 |
AB [auth ATR1] | MIA | Parent Component: A :  AA0071 |
AB [auth ATR1] | PSU | Parent Component: U :  AA0071 |
BB [auth PTR1] | 5MU | Parent Component: U :  AA0071 |
BB [auth PTR1] | G7M | Parent Component: G :  AA0071 |
BB [auth PTR1] | H2U | Parent Component: U :  AA0071 |
BB [auth PTR1] | PSU | Parent Component: U :  AA0071 |
BB [auth PTR1] | T6A | Parent Component: A :  AA0071 |
BB [auth PTR1] | U8U | Parent Component: U :  AA0071 |
DB [auth ETR1] | 2MA | Parent Component: A :  AA0071 |
DB [auth ETR1] | 4SU | Parent Component: U :  AA0071 |
DB [auth ETR1] | 5MU | Parent Component: U :  AA0071 |
DB [auth ETR1] | H2U | Parent Component: U :  AA0071 |
DB [auth ETR1] | OMG | Parent Component: G :  AA0071 |
DB [auth ETR1] | OMU | Parent Component: U :  AA0071 |
DB [auth ETR1] | PSU | Parent Component: U :  AA0071 |