7UOO

Nucleoplasmic pre-60S intermediate of the Nog2 containing pre-rotation state


Domain Annotation: SCOP2 Classification SCOP2 Database Homepage

ChainsTypeFamily Name Domain Identifier Family IdentifierProvenance Source (Version)
J [auth C]SCOP2B Superfamily60S ribosomal protein L4 C-terminal domain-like 8052815 3002143 SCOP2B (2022-06-29)
J [auth C]SCOP2B SuperfamilyRibosomal protein L4 8052816 3001146 SCOP2B (2022-06-29)
K [auth D]SCOP2B SuperfamilyTranslational machinery components 8052875 3000571 SCOP2B (2022-06-29)
L [auth E]SCOP2B SuperfamilyTranslation proteins SH3-like KOW motif containing domain 8053109 3000334 SCOP2B (2022-06-29)
M [auth F]SCOP2B SuperfamilyRibosomal protein L30p/L7e 8052917 3001378 SCOP2B (2022-06-29)
M [auth F]SCOP2B SuperfamilyRibosomal L30p/L7e protein, N-terminal domain-lke 8052916 3002152 SCOP2B (2022-06-29)
N [auth G]SCOP2B SuperfamilyL30e-like 8063962 3001739 SCOP2B (2022-06-29)
Q [auth J]SCOP2B SuperfamilyRL5-like 8073884 3001709 SCOP2B (2022-06-29)
S [auth L]SCOP2B SuperfamilyRibosomal protein L13e-like 8053159 3002162 SCOP2B (2022-06-29)
U [auth N]SCOP2B SuperfamilyRibosomal proteins S24e, L23 and L15e 8082481 3000210 SCOP2B (2022-06-29)
V [auth O]SCOP2B SuperfamilyRibosomal protein L13 8066053 3001134 SCOP2B (2022-06-29)
W [auth P]SCOP2B SuperfamilyRibosomal protein L22 8076708 3001078 SCOP2B (2022-06-29)
X [auth Q]SCOP2B SuperfamilyRibosomal proteins L15p and L18e 8095970 3001045 SCOP2B (2022-06-29)
Y [auth R]SCOP2B SuperfamilyRibosomal protein L19 (L19e) 8077485 3000890 SCOP2B (2022-06-29)
BA [auth U]SCOP2B Superfamily60S Ribosomal protein L22e 8053058 3002158 SCOP2B (2022-06-29)
CA [auth V]SCOP2B Superfamily50S Ribosomal protein L14-like 8103364 3000433 SCOP2B (2022-06-29)
EA [auth X]SCOP2B SuperfamilyRibosomal proteins S24e, L23 and L15e 8095962 3000210 SCOP2B (2022-06-29)
FA [auth Y]SCOP2B SuperfamilyTranslation proteins SH3-like KOW motif containing domain 8076760 3000334 SCOP2B (2022-06-29)
GA [auth Z]SCOP2B SuperfamilyTranslation proteins SH3-like KOW motif containing domain 8053046 3000334 SCOP2B (2022-06-29)
JA [auth c]SCOP2B SuperfamilyL30e-like 8039862 3001739 SCOP2B (2022-06-29)
MA [auth f]SCOP2B SuperfamilyTranslational proteins 8087451 3000811 SCOP2B (2022-06-29)
NA [auth g]SCOP2B SuperfamilyRibosomal protein L34e-like 8053547 3002203 SCOP2B (2022-06-29)
PA [auth i]SCOP2B SuperfamilyRibosomal protein L36e 8053115 3002161 SCOP2B (2022-06-29)
QA [auth j]SCOP2B SuperfamilyZn-binding ribosomal proteins 8080044 3001320 SCOP2B (2022-06-29)
RA [auth k]SCOP2B SuperfamilyRibosomal L38e protein-like 8053562 3002206 SCOP2B (2022-06-29)
SA [auth l]SCOP2B SuperfamilyRibosomal protein L39e 8078549 3001756 SCOP2B (2022-06-29)
VA [auth o]SCOP2B SuperfamilyRNA-binding domain, RBD 8061969 3000110 SCOP2B (2022-06-29)
WA [auth p]SCOP2B SuperfamilyZn-binding ribosomal proteins 8103126 3001320 SCOP2B (2022-06-29)
CB [auth v]SCOP2B SuperfamilyClass II aaRS ABD-related 8092352 3000465 SCOP2B (2022-06-29)
CB [auth v]SCOP2B SuperfamilyClass II aaRS ABD-related 8092351 3000465 SCOP2B (2022-06-29)
DB [auth w]SCOP2B SuperfamilyRrs1-like 8092359 3002595 SCOP2B (2022-06-29)
FB [auth y]SCOP2B SuperfamilyPentein 8036230 3000640 SCOP2B (2022-06-29)
I [auth B]SCOP2B SuperfamilyTranslational proteins 8078363 3000811 SCOP2B (2022-06-29)

Domain Annotation: ECOD Classification ECOD Database Homepage

ChainsFamily NameDomain Identifier ArchitecturePossible HomologyHomologyTopologyFamilyProvenance Source (Version)
AF_UNCLASSIFIEDe7uooA1 A: beta barrelsX: OB-foldH: Nucleic acid-binding proteins (From Topology)T: Nucleic acid-binding proteinsF: F_UNCLASSIFIEDECOD (1.6)
AF_UNCLASSIFIEDe7uooA2 A: beta barrelsX: SH3H: SH3T: SH3F: F_UNCLASSIFIEDECOD (1.6)
J [auth C]F_UNCLASSIFIEDe7uooC1 A: a/b three-layered sandwichesX: Ribosomal protein L4 (From Topology)H: Ribosomal protein L4 (From Topology)T: Ribosomal protein L4F: F_UNCLASSIFIEDECOD (1.6)
J [auth C]F_UNCLASSIFIEDe7uooC2 A: extended segmentsX: C-terminal helical region in 60S ribosomal protein L4 (L4p) (From Topology)H: C-terminal helical region in 60S ribosomal protein L4 (L4p) (From Topology)T: C-terminal helical region in 60S ribosomal protein L4 (L4p)F: F_UNCLASSIFIEDECOD (1.6)
K [auth D]F_UNCLASSIFIEDe7uooD1 A: mixed a+b and a/bX: Ribonuclease H-likeH: Ribonuclease H-like (From Topology)T: Ribonuclease H-likeF: F_UNCLASSIFIEDECOD (1.6)
L [auth E]F_UNCLASSIFIEDe7uooE1 A: beta barrelsX: SH3H: SH3T: SH3F: F_UNCLASSIFIEDECOD (1.6)
M [auth F]F_UNCLASSIFIEDe7uooF1 A: a+b two layersX: Ribosomal protein L30p/L7e (From Topology)H: Ribosomal protein L30p/L7e (From Topology)T: Ribosomal protein L30p/L7eF: F_UNCLASSIFIEDECOD (1.6)
N [auth G]F_UNCLASSIFIEDe7uooG1 A: a+b three layersX: Bacillus chorismate mutase-likeH: L30e-like (From Topology)T: L30e-likeF: F_UNCLASSIFIEDECOD (1.6)
O [auth H]F_UNCLASSIFIEDe7uooH2 A: a+b two layersX: Ribosomal protein L6 (From Topology)H: Ribosomal protein L6 (From Topology)T: Ribosomal protein L6F: F_UNCLASSIFIEDECOD (1.6)
P [auth I]F_UNCLASSIFIEDe7uooI1 A: few secondary structure elementsX: beta-beta-alpha zinc fingersH: beta-beta-alpha zinc fingers (From Topology)T: beta-beta-alpha zinc fingersF: F_UNCLASSIFIEDECOD (1.6)
Q [auth J]F_UNCLASSIFIEDe7uooJ1 A: a+b two layersX: Ribosomal protein L5 (From Topology)H: Ribosomal protein L5 (From Topology)T: Ribosomal protein L5F: F_UNCLASSIFIEDECOD (1.6)
R [auth K]F_UNCLASSIFIEDe7uooK2 A: a+b two layersX: a+b domain in Ribosomal protein L1 (From Topology)H: a+b domain in Ribosomal protein L1 (From Topology)T: a+b domain in Ribosomal protein L1F: F_UNCLASSIFIEDECOD (1.6)
R [auth K]F_UNCLASSIFIEDe7uooK1 A: a/b three-layered sandwichesX: Flavodoxin-likeH: Rossmann-like domain in Ribosomal protein L1 (From Topology)T: Rossmann-like domain in Ribosomal protein L1F: F_UNCLASSIFIEDECOD (1.6)
S [auth L]F_UNCLASSIFIEDe7uooL1 A: extended segmentsX: RPL13 (From Topology)H: RPL13 (From Topology)T: RPL13F: F_UNCLASSIFIEDECOD (1.6)
T [auth M]F_UNCLASSIFIEDe7uooM1 A: beta barrelsX: SH3H: SH3T: SH3F: F_UNCLASSIFIEDECOD (1.6)
U [auth N]F_UNCLASSIFIEDe7uooN1 A: a+b two layersX: Alpha-beta plaitsH: Ribosomal proteins S24e, L23 and L15e (From Topology)T: Ribosomal proteins S24e, L23 and L15eF: F_UNCLASSIFIEDECOD (1.6)
V [auth O]F_UNCLASSIFIEDe7uooO1 A: a/b three-layered sandwichesX: Ribosomal protein L13/L15p/L18e/L32eH: Ribosomal protein L13 and L16-A (From Topology)T: Ribosomal protein L13 and L16-AF: F_UNCLASSIFIEDECOD (1.6)
W [auth P]F_UNCLASSIFIEDe7uooP1 A: a+b two layersX: Enolase-N/ribosomal proteinH: Ribosomal protein L22 (From Topology)T: Ribosomal protein L22F: F_UNCLASSIFIEDECOD (1.6)
X [auth Q]F_UNCLASSIFIEDe7uooQ1 A: a/b three-layered sandwichesX: Ribosomal protein L13/L15p/L18e/L32eH: Ribosomal proteins L15p and L18e (From Topology)T: Ribosomal proteins L15p and L18eF: F_UNCLASSIFIEDECOD (1.6)
Y [auth R]F_UNCLASSIFIEDe7uooR2 A: alpha arraysX: Ribosomal protein L19 (L19e) N-terminal domain (From Topology)H: Ribosomal protein L19 (L19e) N-terminal domain (From Topology)T: Ribosomal protein L19 (L19e) N-terminal domainF: F_UNCLASSIFIEDECOD (1.6)
Y [auth R]F_UNCLASSIFIEDe7uooR1 A: alpha bundlesX: Ribosomal protein L19 (L19e) C-terminal domain (From Topology)H: Ribosomal protein L19 (L19e) C-terminal domain (From Topology)T: Ribosomal protein L19 (L19e) C-terminal domainF: F_UNCLASSIFIEDECOD (1.6)
Z [auth S]F_UNCLASSIFIEDe7uooS1 A: a+b two layersX: GP2-likeH: RplX-like (From Topology)T: RplX-likeF: F_UNCLASSIFIEDECOD (1.6)
AA [auth T]F_UNCLASSIFIEDe7uooT1 A: beta barrelsX: SH3H: SH3T: SH3F: F_UNCLASSIFIEDECOD (1.6)
BA [auth U]F_UNCLASSIFIEDe7uooU1 A: a+b two layersX: Ribosomal protein L22e (From Topology)H: Ribosomal protein L22e (From Topology)T: Ribosomal protein L22eF: F_UNCLASSIFIEDECOD (1.6)
CA [auth V]F_UNCLASSIFIEDe7uooV1 A: beta barrelsX: Ribosomal protein L14-likeH: Ribosomal protein L14-related (From Topology)T: Ribosomal protein L14-relatedF: F_UNCLASSIFIEDECOD (1.6)
DA [auth W]F_UNCLASSIFIEDe7uooW2 A: a+b two layersX: Alpha-beta plaitsH: Ribosomal protein L10-like (From Topology)T: Ribosomal protein L10-likeF: F_UNCLASSIFIEDECOD (1.6)
DA [auth W]F_UNCLASSIFIEDe7uooW1 A: a+b two layersX: Insertion domain in 60S ribosomal protein rpP0 (L10P) (From Topology)H: Insertion domain in 60S ribosomal protein rpP0 (L10P) (From Topology)T: Insertion domain in 60S ribosomal protein rpP0 (L10P)F: F_UNCLASSIFIEDECOD (1.6)
EA [auth X]F_UNCLASSIFIEDe7uooX1 A: a+b two layersX: Alpha-beta plaitsH: Ribosomal proteins S24e, L23 and L15e (From Topology)T: Ribosomal proteins S24e, L23 and L15eF: F_UNCLASSIFIEDECOD (1.6)
FA [auth Y]F_UNCLASSIFIEDe7uooY1 A: beta barrelsX: SH3H: SH3T: SH3F: F_UNCLASSIFIEDECOD (1.6)
GA [auth Z]F_UNCLASSIFIEDe7uooZ1 A: beta barrelsX: SH3H: SH3T: SH3F: F_UNCLASSIFIEDECOD (1.6)
HA [auth a]F_UNCLASSIFIEDe7uooa1 A: a/b three-layered sandwichesX: Ribosomal protein L13/L15p/L18e/L32eH: Ribosomal proteins L15p and L18e (From Topology)T: Ribosomal proteins L15p and L18eF: F_UNCLASSIFIEDECOD (1.6)
JA [auth c]F_UNCLASSIFIEDe7uooc1 A: a+b three layersX: Bacillus chorismate mutase-likeH: L30e-like (From Topology)T: L30e-likeF: F_UNCLASSIFIEDECOD (1.6)
KA [auth d]F_UNCLASSIFIEDe7uood1 A: a+b two layersX: Ribosomal protein L31e-likeH: Ribosomal protein L31e/gp120 outer domain (From Topology)T: Ribosomal protein L31e/gp120 outer domainF: F_UNCLASSIFIEDECOD (1.6)
LA [auth e]F_UNCLASSIFIEDe7uooe1 A: a/b three-layered sandwichesX: Ribosomal protein L13/L15p/L18e/L32eH: Ribosomal protein L32e (From Topology)T: Ribosomal protein L32eF: F_UNCLASSIFIEDECOD (1.6)
MA [auth f]F_UNCLASSIFIEDe7uoof1 A: beta barrelsX: cradle loop barrelH: RIFT-relatedT: Alanine racemase-CF: F_UNCLASSIFIEDECOD (1.6)
NA [auth g]F_UNCLASSIFIEDe7uoog1 A: few secondary structure elementsX: Glucocorticoid receptor-likeH: RPL34 (From Topology)T: RPL34F: F_UNCLASSIFIEDECOD (1.6)
OA [auth h]F_UNCLASSIFIEDe7uooh1 A: alpha bundlesX: Long alpha-hairpinH: Ribosomal protein L29 (L29p) (From Topology)T: Ribosomal protein L29 (L29p)F: F_UNCLASSIFIEDECOD (1.6)
PA [auth i]F_UNCLASSIFIEDe7uooi1 A: alpha arraysX: 60S ribosomal protein rpL36 (L36e) (From Topology)H: 60S ribosomal protein rpL36 (L36e) (From Topology)T: 60S ribosomal protein rpL36 (L36e)F: F_UNCLASSIFIEDECOD (1.6)
QA [auth j]F_UNCLASSIFIEDe7uooj1 A: few secondary structure elementsX: Rubredoxin-likeH: Rubredoxin-relatedT: Rubredoxin-relatedF: F_UNCLASSIFIEDECOD (1.6)
RA [auth k]F_UNCLASSIFIEDe7uook1 A: a+b two layersX: SRP9/14-likeH: Signal recognition particle alu RNA binding heterodimer SRP9/14-related (From Topology)T: Signal recognition particle alu RNA binding heterodimer SRP9/14-relatedF: F_UNCLASSIFIEDECOD (1.6)
SA [auth l]F_UNCLASSIFIEDe7uool1 A: extended segmentsX: Ribosomal protein L39e (From Topology)H: Ribosomal protein L39e (From Topology)T: Ribosomal protein L39eF: F_UNCLASSIFIEDECOD (1.6)
WA [auth p]F_UNCLASSIFIEDe7uoop1 A: few secondary structure elementsX: Rubredoxin-likeH: Rubredoxin-relatedT: Rubredoxin-relatedF: F_UNCLASSIFIEDECOD (1.6)
AB [auth t]F_UNCLASSIFIEDe7uoot1 A: a+b two layersX: Ribosomal protein L30p/L7e (From Topology)H: Ribosomal protein L30p/L7e (From Topology)T: Ribosomal protein L30p/L7eF: F_UNCLASSIFIEDECOD (1.6)
FB [auth y]F_UNCLASSIFIEDe7uooy1 A: a+b duplicates or obligate multimersX: Pentein (From Topology)H: Pentein (From Topology)T: PenteinF: F_UNCLASSIFIEDECOD (1.6)
G [auth 8]F_UNCLASSIFIEDe7uoo82 A: alpha arraysX: HTHH: HTHT: Ribosomal protein L11, C-terminal domainF: F_UNCLASSIFIEDECOD (1.6)
G [auth 8]F_UNCLASSIFIEDe7uoo81 A: a+b two layersX: Ribosomal protein L11/L12e N-terminal domain-likeH: Ribosomal protein L11/L12e N-terminal domain (From Topology)T: Ribosomal protein L11/L12e N-terminal domainF: F_UNCLASSIFIEDECOD (1.6)
I [auth B]F_UNCLASSIFIEDe7uooB1 A: beta barrelsX: cradle loop barrelH: RIFT-relatedT: Alanine racemase-CF: F_UNCLASSIFIEDECOD (1.6)

Protein Family Annotation Pfam Database Homepage

ChainsAccessionNameDescriptionCommentsSource
PF03947Ribosomal Proteins L2, C-terminal domain (Ribosomal_L2_C)Ribosomal Proteins L2, C-terminal domain- Domain
PF00181Ribosomal Proteins L2, RNA binding domain (Ribosomal_L2)Ribosomal Proteins L2, RNA binding domain- Domain
J [auth C]PF1437460S ribosomal protein L4 C-terminal domain (Ribos_L4_asso_C)60S ribosomal protein L4 C-terminal domainThis family is found at the very C-terminal of 60 ribosomal L4 proteins.Domain
J [auth C]PF00573Ribosomal protein L4/L1 family (Ribosomal_L4)Ribosomal protein L4/L1 family- Family
K [auth D]PF17144Ribosomal large subunit proteins 60S L5, and 50S L18 (Ribosomal_L5e)Ribosomal large subunit proteins 60S L5, and 50S L18- Family
K [auth D]PF01198Ribosomal protein L31e (Ribosomal_L31e)Ribosomal protein L31e- Family
K [auth D]PF14204Ribosomal L18 C-terminal region (Ribosomal_L18_c)Ribosomal L18 C-terminal regionThis domain is the C-terminal end of ribosomal L18/L5 proteins.Domain
L [auth E]PF01655Ribosomal protein L32 (Ribosomal_L32e)Ribosomal protein L32- Family
L [auth E]PF01159Ribosomal protein L6e (Ribosomal_L6e)Ribosomal protein L6e- Family
M [auth F]PF00327Ribosomal protein L30p/L7e (Ribosomal_L30)Ribosomal protein L30p/L7eThis family includes prokaryotic L30 and eukaryotic L7.Domain
M [auth F]PF01247Ribosomal protein L35Ae (Ribosomal_L35Ae)Ribosomal protein L35Ae- Domain
O [auth H]PF00347Ribosomal protein L6 (Ribosomal_L6)Ribosomal protein L6- Domain
O [auth H]PF00831Ribosomal L29 protein (Ribosomal_L29)Ribosomal L29 protein- Family
P [auth I]PF12171Zinc-finger double-stranded RNA-binding (zf-C2H2_jaz)Zinc-finger double-stranded RNA-binding- Family
P [auth I]PF01158Ribosomal protein L36e (Ribosomal_L36e)Ribosomal protein L36e- Family
Q [auth J]PF00281Ribosomal protein L5 (Ribosomal_L5)Ribosomal protein L5- Domain
Q [auth J]PF01907Ribosomal protein L37e (Ribosomal_L37e)Ribosomal protein L37e- Family
Q [auth J]PF00673ribosomal L5P family C-terminus (Ribosomal_L5_C)ribosomal L5P family C-terminusThis region is found associated with Pfam:PF00281.Domain
R [auth K]PF01781Ribosomal L38e protein family (Ribosomal_L38e)Ribosomal L38e protein family- Family
R [auth K]PF00687Ribosomal protein L1p/L10e family (Ribosomal_L1)Ribosomal protein L1p/L10e familyThis family includes prokaryotic L1 and eukaryotic L10.Domain
S [auth L]PF00832Ribosomal L39 protein (Ribosomal_L39)Ribosomal L39 protein- Family
T [auth M]PF08153NGP1NT (NUC091) domain (NGP1NT)NGP1NT (NUC091) domainThis N terminal domain is found in a subfamily of hypothetical nucleolar GTP-binding proteins similar to human NGP1 [1].Domain
T [auth M]PF01929Ribosomal protein L14 (Ribosomal_L14e)Ribosomal protein L14- Family
T [auth M]PF00467KOW motif (KOW)KOW motif- Family
U [auth N]PF00827Ribosomal L15 (Ribosomal_L15e)Ribosomal L15- Family
U [auth N]PF06732Pescadillo N-terminus (Pescadillo_N)Pescadillo N-terminus- Family
V [auth O]PF00076RNA recognition motif (RRM_1)RNA recognition motifThe RRM motif (a.k.a. RRM, RBD, or RNP domain) is probably diagnostic of an RNA binding protein. RRMs are found in a variety of RNA binding proteins, including various hnRNP proteins, proteins implicated in regulation of alternative splicing, and pro ...The RRM motif (a.k.a. RRM, RBD, or RNP domain) is probably diagnostic of an RNA binding protein. RRMs are found in a variety of RNA binding proteins, including various hnRNP proteins, proteins implicated in regulation of alternative splicing, and protein components of snRNPs. The motif also appears in a few single stranded DNA binding proteins. The RRM structure consists of four strands and two helices arranged in an alpha/beta sandwich, with a third helix present during RNA binding in some cases The C-terminal beta strand (4th strand) and final helix are hard to align and have been omitted in the SEED alignment The LA proteins (Swiss:P05455) have an N terminal rrm which is included in the seed. There is a second region towards the C terminus that has some features characteristic of a rrm but does not appear to have the important structural core of a rrm. The LA proteins (Swiss:P05455) are one of the main autoantigens in Systemic lupus erythematosus (SLE), an autoimmune disease.
Domain
V [auth O]PF00572Ribosomal protein L13 (Ribosomal_L13)Ribosomal protein L13- Family
W [auth P]PF00237Ribosomal protein L22p/L17e (Ribosomal_L22)Ribosomal protein L22p/L17eThis family includes L22 from prokaryotes and chloroplasts and L17 from eukaryotes.Domain
W [auth P]PF01780Ribosomal L37ae protein family (Ribosomal_L37ae)Ribosomal L37ae protein family- Family
X [auth Q]PF17135Ribosomal protein 60S L18 and 50S L18e (Ribosomal_L18)Ribosomal protein 60S L18 and 50S L18e- Family
Y [auth R]PF01280Ribosomal protein L19e (Ribosomal_L19e)Ribosomal protein L19e- Family
Y [auth R]PF01201Ribosomal protein S8e (Ribosomal_S8e)Ribosomal protein S8e- Family
Z [auth S]PF08701GNL3L/Grn1 putative GTPase (GN3L_Grn1)GNL3L/Grn1 putative GTPase- Family
Z [auth S]PF01775Ribosomal proteins 50S-L18Ae/60S-L20/60S-L18A (Ribosomal_L18A)Ribosomal proteins 50S-L18Ae/60S-L20/60S-L18AThis family includes: archaeal 50S ribosomal protein L18Ae, often referred to as L20e or LX; fungal 60S ribosomal protein L20; and higher eukaryote 60S ribosomal protein L18A.Domain
AA [auth T]PF00327Ribosomal protein L30p/L7e (Ribosomal_L30)Ribosomal protein L30p/L7eThis family includes prokaryotic L30 and eukaryotic L7.Domain
BA [auth U]PF01246Ribosomal protein L24e (Ribosomal_L24e)Ribosomal protein L24e- Domain
BA [auth U]PF01776Ribosomal L22e protein family (Ribosomal_L22e)Ribosomal L22e protein family- Family
CA [auth V]PF00238Ribosomal protein L14p/L23e (Ribosomal_L14)Ribosomal protein L14p/L23e- Domain
CA [auth V]PF04427Brix domain (Brix)Brix domain- Domain
DA [auth W]PF04939Ribosome biogenesis regulatory protein (RRS1) (RRS1)Ribosome biogenesis regulatory protein (RRS1)- Family
DA [auth W]PF17777Insertion domain in 60S ribosomal protein L10P (RL10P_insert)Insertion domain in 60S ribosomal protein L10PThis domain is found in prokaryotic and archaeal ribosomal L10 protein [1].Domain
DA [auth W]PF00466Ribosomal protein L10 (Ribosomal_L10)Ribosomal protein L10- Family
EA [auth X]PF08154NLE (NUC135) domain (NLE)NLE (NUC135) domainThis domain is located N terminal to WD40 repeats. It is found in the microtubule-associated protein Swiss:Q12024 [1].Domain
EA [auth X]PF00276Ribosomal protein L23 (Ribosomal_L23)Ribosomal protein L23- Family
EA [auth X]PF00400WD domain, G-beta repeat (WD40)WD domain, G-beta repeat- Repeat
FA [auth Y]PF01912eIF-6 family (eIF-6)eIF-6 family- Family
FA [auth Y]PF16906Ribosomal proteins L26 eukaryotic, L24P archaeal (Ribosomal_L26)Ribosomal proteins L26 eukaryotic, L24P archaeal- Family
FA [auth Y]PF00467KOW motif (KOW)KOW motif- Family
GA [auth Z]PF01777Ribosomal L27e protein family (Ribosomal_L27e)Ribosomal L27e protein family- Family
G [auth 8]PF03946Ribosomal protein L11, N-terminal domain (Ribosomal_L11_N)Ribosomal protein L11, N-terminal domainThe N-terminal domain of Ribosomal protein L11 adopts an alpha/beta fold and is followed by the RNA binding C-terminal domain.Domain
G [auth 8]PF00298Ribosomal protein L11, RNA binding domain (Ribosomal_L11)Ribosomal protein L11, RNA binding domain- Domain
I [auth B]PF17835NOG1 N-terminal helical domain (NOG1_N)NOG1 N-terminal helical domainThis domain is found at the N-terminus of NOG1 GTPase proteins.Domain
I [auth B]PF06858Nucleolar GTP-binding protein 1 (NOG1) (NOG1)Nucleolar GTP-binding protein 1 (NOG1)- Family

Gene Ontology: Gene Product Annotation Gene Ontology Database Homepage

ChainsPolymerMolecular FunctionBiological ProcessCellular Component
60S ribosomal protein L2-A
J [auth C]60S ribosomal protein L4-A
K [auth D]60S ribosomal protein L5
L [auth E]60S ribosomal protein L6-A
M [auth F]60S ribosomal protein L7-A
N [auth G]60S ribosomal protein L8-A
O [auth H]60S ribosomal protein L9-A
P [auth I]Bud site selection protein 20
Q [auth J]60S ribosomal protein L11-A
R [auth K]Proteasome-interacting protein CIC1
S [auth L]60S ribosomal protein L13-A
B [auth 1]25S rRNA---
T [auth M]60S ribosomal protein L14-A
U [auth N]60S ribosomal protein L15-A
V [auth O]60S ribosomal protein L16-A
W [auth P]60S ribosomal protein L17-A
X [auth Q]60S ribosomal protein L18-A
Y [auth R]60S ribosomal protein L19-A
Z [auth S]60S ribosomal protein L20-A
AA [auth T]60S ribosomal protein L21-A
BA [auth U]60S ribosomal protein L22-A
CA [auth V]60S ribosomal protein L23-A
C [auth 2]5.8S rRNA---
DA [auth W]Ribosome assembly factor MRT4
EA [auth X]60S ribosomal protein L25
FA [auth Y]60S ribosomal protein L26-A
GA [auth Z]60S ribosomal protein L27-A
HA [auth a]60S ribosomal protein L28
IA [auth b]Nucleolar GTP-binding protein 1
JA [auth c]60S ribosomal protein L30
KA [auth d]60S ribosomal protein L31-A
LA [auth e]60S ribosomal protein L32
MA [auth f]60S ribosomal protein L33-A
D [auth 3]5S rRNA---
NA [auth g]60S ribosomal protein L34-A
OA [auth h]60S ribosomal protein L35-A
PA [auth i]60S ribosomal protein L36-A
QA [auth j]60S ribosomal protein L37-A
RA [auth k]60S ribosomal protein L38
SA [auth l]60S ribosomal protein L39
TA [auth m]Nucleolar GTP-binding protein 2
UA [auth n]Pescadillo homolog
VA [auth o]Ribosome biogenesis protein 15
WA [auth p]60S ribosomal protein L43-A
E [auth 5]rRNA-processing protein-
XA [auth q]Ribosome biogenesis protein NOP53
YA [auth r]Ribosome biogenesis protein NSA2-
ZA [auth s]Nuclear GTP-binding protein NUG1
AB [auth t]Ribosome biogenesis protein RLP7
BB [auth u]Ribosome biogenesis protein RLP24
CB [auth v]Ribosome production factor 2 homolog
DB [auth w]Ribosome biogenesis regulatory protein-
EB [auth x]RSA4 isoform 1-
FB [auth y]Eukaryotic translation initiation factor 6
GB [auth z]UPF0642 protein YBL028C- -
F [auth 6]ITS2 rRNA---
HB [auth 4]Probable metalloprotease ARX1
G [auth 8]60S ribosomal protein L12-A
H [auth 9]Ribosome biogenesis protein ALB1-
I [auth B]60S ribosomal protein L3

InterPro: Protein Family Classification InterPro Database Homepage

ChainsAccessionNameType
IPR022669Large ribosomal subunit protein uL2, C-terminalDomain
IPR014722Large ribosomal subunit protein uL2, domain 2Homologous Superfamily
IPR008991Translation protein SH3-like domain superfamilyHomologous Superfamily
IPR022671Large ribosomal subunit protein uL2, conserved siteConserved Site
IPR012340Nucleic acid-binding, OB-foldHomologous Superfamily
IPR022666Large ribosomal subunit protein uL2, RNA-binding domainDomain
IPR014726Large ribosomal subunit protein uL2, domain 3Homologous Superfamily
IPR002171Large ribosomal subunit protein uL2Family
J [auth C]IPR025755Large ribosomal subunit protein uL4, C-terminal domainDomain
J [auth C]IPR002136Large ribosomal subunit protein uL4Family
J [auth C]IPR013000Large ribosomal subunit protein uL4, eukaryotic/archaeal, conserved siteConserved Site
J [auth C]IPR045240Large ribosomal subunit protein uL4, eukaryotic and archaeal typeFamily
J [auth C]IPR023574Large ribosomal subunit protein uL4 domain superfamilyHomologous Superfamily
K [auth D]IPR005485Large ribosomal subunit protein uL18 eukaryotic/archaealFamily
K [auth D]IPR025607Large ribosomal subunit protein uL18, C-terminal, eukaryotesDomain
L [auth E]IPR049633Large ribosomal subunit protein eL6, conserved siteConserved Site
L [auth E]IPR014722Large ribosomal subunit protein uL2, domain 2Homologous Superfamily
L [auth E]IPR041997Large ribosomal subunit protein eL6, KOW domainDomain
L [auth E]IPR008991Translation protein SH3-like domain superfamilyHomologous Superfamily
L [auth E]IPR000915Large ribosomal subunit protein eL6Family
M [auth F]IPR035808Large ribosomal subunit protein uL30, eukaryotic/archaealDomain
M [auth F]IPR036919Large ribosomal subunit protein uL30, ferredoxin-like fold domain superfamilyHomologous Superfamily
M [auth F]IPR012988Large ribosomal subunit protein uL30, N-terminal, eukaryotesDomain
M [auth F]IPR039699Large ribosomal subunit protein uL30Family
M [auth F]IPR005998Large ribosomal subunit protein uL30, eukaryoticFamily
M [auth F]IPR016082Large ribosomal subunit protein uL30-like, ferredoxin-like fold domainDomain
M [auth F]IPR018038Large ribosomal subunit protein uL30, conserved siteConserved Site
N [auth G]IPR050257Large ribosomal subunit protein eL8/uL1-likeFamily
N [auth G]IPR004038Ribosomal protein eL8/eL30/eS12/Gadd45Domain
N [auth G]IPR004037Large ribosomal subunit protein eL8-like, conserved siteConserved Site
N [auth G]IPR029064Ribosomal protein eL30-like superfamilyHomologous Superfamily
N [auth G]IPR001921Large ribosomal subunit protein eL8, eukaryotaFamily
N [auth G]IPR018492Ribosomal protein eL8/Nhp2 familyFamily
O [auth H]IPR020040Large ribosomal subunit protein uL6, alpha-beta domainDomain
O [auth H]IPR002359Large ribosomal subunit protein uL6, conserved site-2Conserved Site
O [auth H]IPR036789Large ribosomal subunit protein uL6-like, alpha-beta domain superfamilyHomologous Superfamily
O [auth H]IPR000702Large ribosomal subunit protein uL6-likeFamily
P [auth I]IPR003604Matrin/U1-C-like, C2H2-type zinc fingerDomain
P [auth I]IPR051879C2H2-type Zinc Finger Maturation ProteinFamily
P [auth I]IPR013087Zinc finger C2H2-typeDomain
P [auth I]IPR036236Zinc finger C2H2 superfamilyHomologous Superfamily
P [auth I]IPR022755Zinc finger, double-stranded RNA bindingDomain
Q [auth J]IPR020929Large ribosomal subunit protein uL5, conserved siteConserved Site
Q [auth J]IPR022803Large ribosomal subunit protein uL5 domain superfamilyHomologous Superfamily
Q [auth J]IPR031309Large ribosomal subunit protein uL5, C-terminalDomain
Q [auth J]IPR031310Large ribosomal subunit protein uL5, N-terminalDomain
Q [auth J]IPR002132Large ribosomal subunit protein uL5Family
R [auth K]IPR023674Ribosomal protein uL1-likeHomologous Superfamily
R [auth K]IPR028364Ribosomal protein uL1/ribosomal biogenesis proteinFamily
S [auth L]IPR001380Large ribosomal subunit protein eL13Family
S [auth L]IPR018256Large ribosomal subunit protein eL13, conserved siteConserved Site
T [auth M]IPR014722Large ribosomal subunit protein uL2, domain 2Homologous Superfamily
T [auth M]IPR008991Translation protein SH3-like domain superfamilyHomologous Superfamily
T [auth M]IPR039660Large ribosomal subunit protein eL14Family
T [auth M]IPR041985Large ribosomal subunit protein eL14, KOW motifDomain
T [auth M]IPR002784Large ribosomal subunit protein eL14 domainDomain
T [auth M]IPR005824KOWDomain
U [auth N]IPR012678Ribosomal protein uL23/eL15/eS24 core domain superfamilyHomologous Superfamily
U [auth N]IPR020925Large ribosomal subunit protein eL15, conserved siteConserved Site
U [auth N]IPR024794Large ribosomal subunit protein eL15 core domain superfamilyHomologous Superfamily
U [auth N]IPR000439Large ribosomal subunit protein eL15Family
V [auth O]IPR005755Large ribosomal subunit protein uL13, eukaryotic/archaealFamily
V [auth O]IPR023563Large ribosomal subunit protein uL13, conserved siteConserved Site
V [auth O]IPR005822Large ribosomal subunit protein uL13Family
V [auth O]IPR036899Large ribosomal subunit protein uL13 superfamilyHomologous Superfamily
W [auth P]IPR018260Large ribosomal subunit protein uL22, conserved siteConserved Site
W [auth P]IPR036394Ribosomal protein uL22 superfamilyHomologous Superfamily
W [auth P]IPR001063Large ribosomal subunit protein uL22Family
W [auth P]IPR005721Large ribosomal subunit protein uL22, eukaryotic/archaealFamily
X [auth Q]IPR021131Large ribosomal subunit protein uL15/eL18Domain
X [auth Q]IPR021132Large ribosomal subunit protein eL18, conserved siteConserved Site
X [auth Q]IPR000039Large ribosomal subunit protein eL18Family
X [auth Q]IPR036227Large ribosomal subunit protein uL15/eL18 superfamilyHomologous Superfamily
Y [auth R]IPR015972Large ribosomal subunit protein eL19, domain 1Homologous Superfamily
Y [auth R]IPR039547Large ribosomal subunit protein eL19Family
Y [auth R]IPR023638Large ribosomal subunit protein eL19, conserved siteConserved Site
Y [auth R]IPR035970Large ribosomal subunit protein eL19 superfamilyHomologous Superfamily
Y [auth R]IPR000196Large ribosomal subunit protein eL19 domainDomain
Y [auth R]IPR033935Large ribosomal subunit protein eL19, eukaryoticDomain
Z [auth S]IPR028877Large ribosomal subunit protein eL20Family
Z [auth S]IPR023573Large ribosomal subunit protein eL20 domainDomain
Z [auth S]IPR021138Large ribosomal subunit protein eL20, eukaryotesFamily
AA [auth T]IPR018259Large ribosomal subunit protein eL21, conserved siteConserved Site
AA [auth T]IPR036948Large ribosomal subunit protein eL21 superfamilyHomologous Superfamily
AA [auth T]IPR001147Large ribosomal subunit protein eL21Family
AA [auth T]IPR008991Translation protein SH3-like domain superfamilyHomologous Superfamily
BA [auth U]IPR002671Large ribosomal subunit protein eL22Family
BA [auth U]IPR038526Large ribosomal subunit protein eL22 superfamilyHomologous Superfamily
CA [auth V]IPR036853Large ribosomal subunit protein uL14 superfamilyHomologous Superfamily
CA [auth V]IPR000218Large ribosomal subunit protein uL14Family
CA [auth V]IPR019972Large ribosomal subunit protein uL14, conserved siteConserved Site
DA [auth W]IPR043141Large ribosomal subunit protein uL10-like domain superfamilyHomologous Superfamily
DA [auth W]IPR001790Large ribosomal subunit protein uL10Family
DA [auth W]IPR043164Large ribosomal subunit protein uL10-like, insertion domain superfamilyHomologous Superfamily
DA [auth W]IPR051742Ribosomal Assembly Factor uL10Family
DA [auth W]IPR040637Large ribosomal subunit protein uL10-like, insertion domainDomain
DA [auth W]IPR033867Ribosome assembly factor Mrt4Family
EA [auth X]IPR001014Large ribosomal subunit protein uL23, conserved siteConserved Site
EA [auth X]IPR013025Large ribosomal subunit protein uL23-likeFamily
EA [auth X]IPR012678Ribosomal protein uL23/eL15/eS24 core domain superfamilyHomologous Superfamily
EA [auth X]IPR012677Nucleotide-binding alpha-beta plait domain superfamilyHomologous Superfamily
EA [auth X]IPR005633Large ribosomal subunit protein uL23, N-terminalDomain
FA [auth Y]IPR041988Large ribosomal subunit protein uL24, KOW domainDomain
FA [auth Y]IPR014722Large ribosomal subunit protein uL2, domain 2Homologous Superfamily
FA [auth Y]IPR005824KOWDomain
FA [auth Y]IPR008991Translation protein SH3-like domain superfamilyHomologous Superfamily
FA [auth Y]IPR005756Large ribosomal subunit protein uL24, eukaryotic/archaealFamily
FA [auth Y]IPR005825Large ribosomal subunit protein uL24, conserved siteConserved Site
GA [auth Z]IPR018262Large ribosomal subunit protein eL27, conserved siteConserved Site
GA [auth Z]IPR038655Large ribosomal subunit protein eL27 superfamilyHomologous Superfamily
GA [auth Z]IPR008991Translation protein SH3-like domain superfamilyHomologous Superfamily
GA [auth Z]IPR001141Large ribosomal subunit protein eL27Family
GA [auth Z]IPR041991Large ribosomal subunit protein eL27, KOW domainDomain
HA [auth a]IPR021131Large ribosomal subunit protein uL15/eL18Domain
HA [auth a]IPR030878Large ribosomal subunit protein uL15Family
HA [auth a]IPR001196Large ribosomal subunit protein uL15, conserved siteConserved Site
HA [auth a]IPR036227Large ribosomal subunit protein uL15/eL18 superfamilyHomologous Superfamily
IA [auth b]IPR024926Nucleolar GTP-binding protein 1Family
IA [auth b]IPR031167OBG-type guanine nucleotide-binding (G) domainDomain
IA [auth b]IPR012973NOG, C-terminalDomain
IA [auth b]IPR010674Nucleolar GTP-binding protein 1, Rossman-fold domainDomain
IA [auth b]IPR041623NOG1, N-terminal helical domainDomain
IA [auth b]IPR006073GTP binding domainDomain
IA [auth b]IPR027417P-loop containing nucleoside triphosphate hydrolaseHomologous Superfamily
JA [auth c]IPR022991Large ribosomal subunit protein eL30, conserved siteConserved Site
JA [auth c]IPR004038Ribosomal protein eL8/eL30/eS12/Gadd45Domain
JA [auth c]IPR039109Large ribosomal subunit protein eL30-likeFamily
JA [auth c]IPR029064Ribosomal protein eL30-like superfamilyHomologous Superfamily
KA [auth d]IPR020052Large ribosomal subunit protein eL31, conserved siteConserved Site
KA [auth d]IPR023621Large ribosomal subunit protein eL31 domain superfamilyHomologous Superfamily
KA [auth d]IPR000054Large ribosomal subunit protein eL31Family
LA [auth e]IPR036351Large ribosomal subunit protein eL32 superfamilyHomologous Superfamily
LA [auth e]IPR001515Large ribosomal subunit protein eL32Family
LA [auth e]IPR018263Large ribosomal subunit protein eL32, conserved siteConserved Site
MA [auth f]IPR038661Large ribosomal subunit protein eL33 superfamilyHomologous Superfamily
MA [auth f]IPR009000Translation protein, beta-barrel domain superfamilyHomologous Superfamily
MA [auth f]IPR001780Large ribosomal subunit protein eL33Family
MA [auth f]IPR018266Large ribosomal subunit protein eL33, conserved siteConserved Site
NA [auth g]IPR008195Large ribosomal subunit protein eL34Family
NA [auth g]IPR018065Large ribosomal subunit protein eL34, conserved siteConserved Site
OA [auth h]IPR045059Large ribosomal subunit protein uL29, eukaryotesFamily
OA [auth h]IPR001854Large ribosomal subunit protein uL29Family
OA [auth h]IPR036049Large ribosomal subunit protein uL29 superfamilyHomologous Superfamily
OA [auth h]IPR018254Large ribosomal subunit protein uL29, conserved siteConserved Site
PA [auth i]IPR000509Large ribosomal subunit protein eL36Family
PA [auth i]IPR038097Large ribosomal subunit protein eL36 domain superfamilyHomologous Superfamily
QA [auth j]IPR011331Large ribosomal subunit protein eL37/eL43Homologous Superfamily
QA [auth j]IPR001569Large ribosomal subunit protein eL37Family
QA [auth j]IPR018267Large ribosomal subunit protein eL37, conserved siteConserved Site
QA [auth j]IPR011332Zinc-binding ribosomal proteinHomologous Superfamily
RA [auth k]IPR002675Large ribosomal subunit protein eL38Family
RA [auth k]IPR038464Large ribosomal subunit protein eL38 superfamilyHomologous Superfamily
SA [auth l]IPR023626Large ribosomal subunit protein eL39 domain superfamilyHomologous Superfamily
SA [auth l]IPR000077Large ribosomal subunit protein eL39Family
SA [auth l]IPR020083Large ribosomal subunit protein eL39, conserved siteConserved Site
TA [auth m]IPR050755TRAFAC YlqF/YawG GTPases, Ribosome MaturationFamily
TA [auth m]IPR030378Circularly permuted (CP)-type guanine nucleotide-binding (G) domainDomain
TA [auth m]IPR024929Nucleolar GTP-binding protein 2, circularly permuted GTPase motifDomain
TA [auth m]IPR006073GTP binding domainDomain
TA [auth m]IPR012971Nucleolar GTP-binding protein 2, N-terminal domainDomain
TA [auth m]IPR023179GTP-binding protein, orthogonal bundle domain superfamilyHomologous Superfamily
TA [auth m]IPR027417P-loop containing nucleoside triphosphate hydrolaseHomologous Superfamily
UA [auth n]IPR010613PescadilloFamily
UA [auth n]IPR001357BRCT domainDomain
UA [auth n]IPR036420BRCT domain superfamilyHomologous Superfamily
VA [auth o]IPR012677Nucleotide-binding alpha-beta plait domain superfamilyHomologous Superfamily
VA [auth o]IPR000504RNA recognition motif domainDomain
VA [auth o]IPR034469Ribosome biogenesis protein 15, RNA recognition motifDomain
VA [auth o]IPR035979RNA-binding domain superfamilyHomologous Superfamily
WA [auth p]IPR002674Large ribosomal subunit protein eL43Family
WA [auth p]IPR011332Zinc-binding ribosomal proteinHomologous Superfamily
WA [auth p]IPR011331Large ribosomal subunit protein eL37/eL43Homologous Superfamily
WA [auth p]IPR050522Eukaryotic ribosomal protein eL43Family
E [auth 5]IPR005579Cgr1-likeFamily
XA [auth q]IPR011687Ribosome biogenesis protein Nop53/GLTSCR2Family
YA [auth r]IPR039411Ribosomal biogenesis NSA2 familyFamily
YA [auth r]IPR022309Ribosomal protein eS8/ribosomal biogenesis NSA2Family
ZA [auth s]IPR050755TRAFAC YlqF/YawG GTPases, Ribosome MaturationFamily
ZA [auth s]IPR030378Circularly permuted (CP)-type guanine nucleotide-binding (G) domainDomain
ZA [auth s]IPR006073GTP binding domainDomain
ZA [auth s]IPR014813Guanine nucleotide-binding protein-like 3, N-terminal domainDomain
ZA [auth s]IPR023179GTP-binding protein, orthogonal bundle domain superfamilyHomologous Superfamily
ZA [auth s]IPR027417P-loop containing nucleoside triphosphate hydrolaseHomologous Superfamily
AB [auth t]IPR035808Large ribosomal subunit protein uL30, eukaryotic/archaealDomain
AB [auth t]IPR036919Large ribosomal subunit protein uL30, ferredoxin-like fold domain superfamilyHomologous Superfamily
AB [auth t]IPR039699Large ribosomal subunit protein uL30Family
AB [auth t]IPR016082Large ribosomal subunit protein uL30-like, ferredoxin-like fold domainDomain
AB [auth t]IPR018038Large ribosomal subunit protein uL30, conserved siteConserved Site
BB [auth u]IPR011017TRASH domainDomain
BB [auth u]IPR000988Large ribosomal subunit protein eL24-relatedFamily
BB [auth u]IPR038630Ribosomal protein L24e/L24 superfamilyHomologous Superfamily
CB [auth v]IPR039770Ribosome biogenesis protein Rpf2Family
CB [auth v]IPR007109Brix domainDomain
DB [auth w]IPR007023Ribosomal biogenesis regulatory proteinFamily
EB [auth x]IPR001680WD40 repeatRepeat
EB [auth x]IPR019775WD40 repeat, conserved siteConserved Site
EB [auth x]IPR012972NLEDomain
EB [auth x]IPR020472G-protein beta WD-40 repeatRepeat
EB [auth x]IPR036322WD40-repeat-containing domain superfamilyHomologous Superfamily
EB [auth x]IPR015943WD40/YVTN repeat-like-containing domain superfamilyHomologous Superfamily
FB [auth y]IPR002769Translation initiation factor IF6Family
GB [auth z]IPR019434Domain of unknown function DUF2423Domain
HB [auth 4]IPR036388Winged helix-like DNA-binding domain superfamilyHomologous Superfamily
HB [auth 4]IPR047113Proliferation-associated protein 2G4/ARX1Family
HB [auth 4]IPR036005Creatinase/aminopeptidase-likeHomologous Superfamily
G [auth 8]IPR020785Large ribosomal subunit protein uL11, conserved siteConserved Site
G [auth 8]IPR020783Large ribosomal subunit protein uL11, C-terminalDomain
G [auth 8]IPR000911Ribosomal protein uL11Family
G [auth 8]IPR020784Large ribosomal subunit protein uL11, N-terminalDomain
G [auth 8]IPR036769Large ribosomal subunit protein uL11, C-terminal domain superfamilyHomologous Superfamily
G [auth 8]IPR036796Large ribosomal subunit protein uL11, N-terminal domain superfamilyHomologous Superfamily
H [auth 9]IPR022784Ribosome biogenesis protein Alb1Family
I [auth B]IPR019926Large ribosomal subunit protein uL3, conserved siteConserved Site
I [auth B]IPR045077Large ribosomal subunit protein uL3, archaeal/eukaryotic-typeFamily
I [auth B]IPR044892Ribosomal protein L3, domain 3, archaeal-type superfamilyHomologous Superfamily
I [auth B]IPR000597Large ribosomal subunit protein uL3Family
I [auth B]IPR009000Translation protein, beta-barrel domain superfamilyHomologous Superfamily