7PE7

cryo-EM structure of DEPTOR bound to human mTOR complex 2, overall refinement

External Resource: Annotation


Domain Annotation: SCOP2 Classification SCOP2 Database Homepage

ChainsTypeFamily Name Domain Identifier Family IdentifierProvenance Source (Version)
A [auth B]SCOP2B SuperfamilyFKBP12-rapamycin-binding domain of FKBP-rapamycin-associated protein (FRAP) 8036936 3001600 SCOP2B (2022-06-29)
E [auth A]SCOP2B SuperfamilyFKBP12-rapamycin-binding domain of FKBP-rapamycin-associated protein (FRAP) 8036936 3001600 SCOP2B (2022-06-29)

Domain Annotation: ECOD Classification ECOD Database Homepage

ChainsFamily NameDomain Identifier ArchitecturePossible HomologyHomologyTopologyFamilyProvenance Source (Version)
B [auth D]ANAPC4_WD40_5e7pe7D1 A: beta duplicates or obligate multimersX: beta-propeller-likeH: beta-propellerT: 8-bladedF: ANAPC4_WD40_5ECOD (1.6)
F [auth C]ANAPC4_WD40_5e7pe7C1 A: beta duplicates or obligate multimersX: beta-propeller-likeH: beta-propellerT: 8-bladedF: ANAPC4_WD40_5ECOD (1.6)
IPDZe7pe7I1 A: beta barrelsX: PDZ domain (From Topology)H: PDZ domain (From Topology)T: PDZ domainF: PDZECOD (1.6)
JPDZe7pe7J1 A: beta barrelsX: PDZ domain (From Topology)H: PDZ domain (From Topology)T: PDZ domainF: PDZECOD (1.6)

Protein Family Annotation Pfam Database Homepage

ChainsAccessionNameDescriptionCommentsSource
A [auth B],
E [auth A]		PF02260FATC domain (FATC)FATC domain- Family
A [auth B],
E [auth A]		PF08771FKBP12-rapamycin binding domain (FRB_dom)FKBP12-rapamycin binding domainThe macrolide antibiotic rapamycin and the cytosol protein FKBP12 can form a complex which specifically inhibits the TORC1 complex, leading to growth arrest. The FKBP12-rapamycin complex interferes with TORC1 function by binding to the FKBP12-rapa ...The macrolide antibiotic rapamycin and the cytosol protein FKBP12 can form a complex which specifically inhibits the TORC1 complex, leading to growth arrest. The FKBP12-rapamycin complex interferes with TORC1 function by binding to the FKBP12-rapamycin binding domain (FRB) of the TOR proteins. This entry represents the FRB domain [1, 2].
Domain
A [auth B],
E [auth A]		PF00454Phosphatidylinositol 3- and 4-kinase (PI3_PI4_kinase)Phosphatidylinositol 3- and 4-kinase- Family
A [auth B],
E [auth A]		PF11865Serine/threonine-protein kinase mTOR domain (mTOR_dom)Serine/threonine-protein kinase mTOR domain- Repeat
A [auth B],
E [auth A]		PF02259FAT domain (FAT)FAT domain- Repeat
B [auth D],
F [auth C]		PF00400WD domain, G-beta repeat (WD40)WD domain, G-beta repeat- Repeat
C [auth F],
G [auth E]		PF14663Rapamycin-insensitive companion of mTOR RasGEF_N domain (RasGEF_N_2)Rapamycin-insensitive companion of mTOR RasGEF_N domainRictor appears to serve as a scaffolding protein that is important for maintaining mTORC2 integrity. The mammalian target of rapamycin (mTOR) is a conserved Ser/Thr kinase that forms two functionally distinct complexes, mTROC1 and mTORC2, important f ...Rictor appears to serve as a scaffolding protein that is important for maintaining mTORC2 integrity. The mammalian target of rapamycin (mTOR) is a conserved Ser/Thr kinase that forms two functionally distinct complexes, mTROC1 and mTORC2, important for nutrient and growth-factor signalling. This region is the more conserved central section that may include several individual domains. Rictor can be inhibited in the short-term by rapamycin.
Domain
C [auth F],
G [auth E]		PF14664Rapamycin-insensitive companion of mTOR, N-term (RICTOR_N)Rapamycin-insensitive companion of mTOR, N-termRictor appears to serve as a scaffolding protein that is important for maintaining mTORC2 integrity. The mammalian target of rapamycin (mTOR) is a conserved Ser/Thr kinase that forms two functionally distinct complexes, mTROC1 and mTORC2, important f ...Rictor appears to serve as a scaffolding protein that is important for maintaining mTORC2 integrity. The mammalian target of rapamycin (mTOR) is a conserved Ser/Thr kinase that forms two functionally distinct complexes, mTROC1 and mTORC2, important for nutrient and growth-factor signalling. This region is the N-terminal conserved section that may include several individual domains. Rictor can be inhibited in the short-term by rapamycin.
Domain
C [auth F],
G [auth E]		PF14666Rapamycin-insensitive companion of mTOR, middle domain (RICTOR_M)Rapamycin-insensitive companion of mTOR, middle domainRictor appears to serve as a scaffolding protein that is important for maintaining mTORC2 integrity. The mammalian target of rapamycin (mTOR) is a conserved Ser/Thr kinase that forms two functionally distinct complexes, mTROC1 and mTORC2, important f ...Rictor appears to serve as a scaffolding protein that is important for maintaining mTORC2 integrity. The mammalian target of rapamycin (mTOR) is a conserved Ser/Thr kinase that forms two functionally distinct complexes, mTROC1 and mTORC2, important for nutrient and growth-factor signalling. This region is the more conserved central section that may include several individual domains. Rictor can be inhibited in the short-term by rapamycin.
Domain
C [auth F],
G [auth E]		PF14668Rapamycin-insensitive companion of mTOR, domain 5 (RICTOR_V)Rapamycin-insensitive companion of mTOR, domain 5Rictor appears to serve as a scaffolding protein that is important for maintaining mTORC2 integrity. The mammalian target of rapamycin (mTOR) is a conserved Ser/Thr kinase that forms two functionally distinct complexes, mTROC1 and mTORC2, important f ...Rictor appears to serve as a scaffolding protein that is important for maintaining mTORC2 integrity. The mammalian target of rapamycin (mTOR) is a conserved Ser/Thr kinase that forms two functionally distinct complexes, mTROC1 and mTORC2, important for nutrient and growth-factor signalling. These long eukaryotic proteins carry several well-conserved domains, and this is No.5.
Domain
D [auth H],
H [auth G]		PF05422Stress-activated map kinase interacting protein 1 (SIN1) (SIN1)Stress-activated map kinase interacting protein 1 (SIN1)- Family
D [auth H],
H [auth G]		PF16978SAPK-interacting protein 1 (Sin1), middle CRIM domain (CRIM)SAPK-interacting protein 1 (Sin1), middle CRIM domain- Family

Gene Ontology: Gene Product Annotation Gene Ontology Database Homepage

ChainsPolymerMolecular FunctionBiological ProcessCellular Component
A [auth B],
E [auth A]		Serine/threonine-protein kinase mTOR
B [auth D],
F [auth C]		Target of rapamycin complex subunit LST8
C [auth F],
G [auth E]		Rapamycin-insensitive companion of mTOR
D [auth H],
H [auth G]		Target of rapamycin complex 2 subunit MAPKAP1
I, J
DEP domain-containing mTOR-interacting protein

InterPro: Protein Family Classification InterPro Database Homepage

ChainsAccessionNameType
A [auth B],
E [auth A]		IPR016024Armadillo-type foldHomologous Superfamily
A [auth B],
E [auth A]		IPR009076FKBP12-rapamycin binding domainDomain
A [auth B],
E [auth A]		IPR011990Tetratricopeptide-like helical domain superfamilyHomologous Superfamily
A [auth B],
E [auth A]		IPR018936Phosphatidylinositol 3/4-kinase, conserved siteConserved Site
A [auth B],
E [auth A]		IPR036940Phosphatidylinositol 3-/4-kinase, catalytic domain superfamilyHomologous Superfamily
A [auth B],
E [auth A]		IPR014009PIK-related kinaseDomain
A [auth B],
E [auth A]		IPR026683Serine/threonine-protein kinase TOR, catalytic domainDomain
A [auth B],
E [auth A]		IPR003151PIK-related kinase, FATDomain
A [auth B],
E [auth A]		IPR036738FKBP12-rapamycin binding domain superfamilyHomologous Superfamily
A [auth B],
E [auth A]		IPR003152FATC domainDomain
A [auth B],
E [auth A]		IPR024585Serine/threonine-protein kinase mTOR domainDomain
A [auth B],
E [auth A]		IPR011989Armadillo-like helicalHomologous Superfamily
A [auth B],
E [auth A]		IPR000403Phosphatidylinositol 3-/4-kinase, catalytic domainDomain
A [auth B],
E [auth A]		IPR050517DNA Damage Response and Repair KinaseFamily
A [auth B],
E [auth A]		IPR011009Protein kinase-like domain superfamilyHomologous Superfamily
B [auth D],
F [auth C]		IPR019775WD40 repeat, conserved siteConserved Site
B [auth D],
F [auth C]		IPR011047Quinoprotein alcohol dehydrogenase-like superfamilyHomologous Superfamily
B [auth D],
F [auth C]		IPR015943WD40/YVTN repeat-like-containing domain superfamilyHomologous Superfamily
B [auth D],
F [auth C]		IPR001680WD40 repeatRepeat
B [auth D],
F [auth C]		IPR037588Target of rapamycin complex subunit LST8Family
B [auth D],
F [auth C]		IPR020472G-protein beta WD-40 repeatRepeat
C [auth F],
G [auth E]		IPR028267Rapamycin-insensitive companion of mTOR, N-terminal domainDomain
C [auth F],
G [auth E]		IPR029451Rapamycin-insensitive companion of mTOR, middle domainDomain
C [auth F],
G [auth E]		IPR016024Armadillo-type foldHomologous Superfamily
C [auth F],
G [auth E]		IPR029259Rapamycin-insensitive companion of mTOR, phosphorylation-sitePTM
C [auth F],
G [auth E]		IPR029453Rapamycin-insensitive companion of mTOR, domain 4Domain
C [auth F],
G [auth E]		IPR029452Rapamycin-insensitive companion of mTOR, domain 5Domain
C [auth F],
G [auth E]		IPR028268Pianissimo familyFamily
D [auth H],
H [auth G]		IPR032679Sin1, N-terminalDomain
D [auth H],
H [auth G]		IPR031313SAPK-interacting protein 1, Pleckstrin-homology domainDomain
D [auth H],
H [auth G]		IPR011993PH-like domain superfamilyHomologous Superfamily
D [auth H],
H [auth G]		IPR031567Sin1, middle CRIM domainDomain
D [auth H],
H [auth G]		IPR008828TORC2 component Sin1/Avo1Family
I, J
IPR000591DEP domainDomain
I, J
IPR036388Winged helix-like DNA-binding domain superfamilyHomologous Superfamily
I, J
IPR037336DEP domain-containing mTOR-interacting protein, DEP domain 2Domain
I, J
IPR036390Winged helix DNA-binding domain superfamilyHomologous Superfamily
I, J
IPR036034PDZ superfamilyHomologous Superfamily
I, J
IPR037335DEP domain-containing mTOR-interacting protein, DEP domain 1Domain
I, J
IPR051832Regulators of mTOR signaling and Rac activationFamily
I, J
IPR001478PDZ domainDomain

Pharos: Disease Associations Pharos Homepage Annotation

ChainsDrug Target  Associated Disease
A [auth B],
E [auth A]		Pharos:  P42345
B [auth D],
F [auth C]		Pharos:  Q9BVC4
C [auth F],
G [auth E]		Pharos:  Q6R327
D [auth H],
H [auth G]		Pharos:  Q9BPZ7
I, J
Pharos:  Q8TB45