7NS4

Catalytic module of yeast Chelator-GID SR4 E3 ubiquitin ligase

External Resource: Annotation

Protein Family Annotation
Gene Ontology: Gene Product Annotation
InterPro: Protein Family Classification

Protein Family Annotation Pfam Database Homepage

Chains	Accession	Name	Description	Comments	Source
A [auth b]	PF10607	CTLH/CRA C-terminal to LisH motif domain (CTLH)	CTLH/CRA C-terminal to LisH motif domain	RanBPM is a scaffolding protein and is important in regulating cellular function in both the immune system and the nervous system. This domain is at the C-terminus of the proteins and is the binding domain for the CRA motif (for CT11-RanBPM), which ...	RanBPM is a scaffolding protein and is important in regulating cellular function in both the immune system and the nervous system. This domain is at the C-terminus of the proteins and is the binding domain for the CRA motif (for CT11-RanBPM), which is comprised of approximately 100 amino acids at the C terminal of RanBPM. It was found to be important for the interaction of RanBPM with fragile X messenger ribonucleoprotein 1 (FMRP), but its functional significance has yet to be determined [5]. This region contains CTLH and CRA domains annotated by SMART; however, these may be a single domain, and it is refereed to as a C-terminal to LisH motif [6].	Domain
B [auth i]	PF10607	CTLH/CRA C-terminal to LisH motif domain (CTLH)	CTLH/CRA C-terminal to LisH motif domain	RanBPM is a scaffolding protein and is important in regulating cellular function in both the immune system and the nervous system. This domain is at the C-terminus of the proteins and is the binding domain for the CRA motif (for CT11-RanBPM), which ...	RanBPM is a scaffolding protein and is important in regulating cellular function in both the immune system and the nervous system. This domain is at the C-terminus of the proteins and is the binding domain for the CRA motif (for CT11-RanBPM), which is comprised of approximately 100 amino acids at the C terminal of RanBPM. It was found to be important for the interaction of RanBPM with fragile X messenger ribonucleoprotein 1 (FMRP), but its functional significance has yet to be determined [5]. This region contains CTLH and CRA domains annotated by SMART; however, these may be a single domain, and it is refereed to as a C-terminal to LisH motif [6].	Domain

Gene Ontology: Gene Product Annotation Gene Ontology Database Homepage

Chains	Polymer	Molecular Function	Biological Process	Cellular Component
A [auth b]	E3 ubiquitin-protein ligase RMD5	aminoacyltransferase activity ubiquitin-like protein transferase activity catalytic activity, acting on a protein acyltransferase activity ubiquitin-like protein ligase activity ubiquitin protein ligase activity transferase activity catalytic activity ubiquitin-protein transferase activity cation binding ion binding binding metal ion binding small molecule binding	organonitrogen compound catabolic process organonitrogen compound metabolic process catabolic process proteolysis involved in protein catabolic process primary metabolic process protein catabolic process macromolecule catabolic process organic substance metabolic process modification-dependent macromolecule catabolic process modification-dependent protein catabolic process proteolysis ubiquitin-dependent protein catabolic process metabolic process protein metabolic process organonitrogen compound catabolic process organonitrogen compound metabolic process catabolic process proteolysis involved in protein catabolic process primary metabolic process protein catabolic process macromolecule catabolic process organic substance metabolic process modification-dependent macromolecule catabolic process modification-dependent protein catabolic process proteolysis ubiquitin-dependent protein catabolic process metabolic process protein metabolic process macromolecule metabolic process organic substance catabolic process monosaccharide metabolic process negative regulation of small molecule metabolic process regulation of cellular process cellular biosynthetic process negative regulation of biological process gluconeogenesis negative regulation of cellular metabolic process regulation of primary metabolic process negative regulation of gluconeogenesis regulation of small molecule metabolic process organic substance biosynthetic process negative regulation of cellular process small molecule metabolic process regulation of carbohydrate metabolic process regulation of glucose metabolic process negative regulation of carbohydrate metabolic process regulation of biosynthetic process carbohydrate metabolic process regulation of biological process small molecule biosynthetic process negative regulation of metabolic process carbohydrate biosynthetic process cellular metabolic process biological regulation hexose metabolic process monosaccharide biosynthetic process regulation of cellular metabolic process negative regulation of cellular biosynthetic process regulation of cellular biosynthetic process hexose biosynthetic process biosynthetic process negative regulation of biosynthetic process regulation of gluconeogenesis cellular process regulation of carbohydrate biosynthetic process regulation of metabolic process glucose metabolic process protein ubiquitination macromolecule modification post-translational protein modification protein modification process protein modification by small protein conjugation protein modification by small protein conjugation or removal proteasomal protein catabolic process proteasome-mediated ubiquitin-dependent protein catabolic process	membrane-bounded organelle intracellular organelle intracellular anatomical structure organelle peroxisome microbody cytoplasm cellular anatomical entity intracellular membrane-bounded organelle cytosol GID complex protein-containing complex ubiquitin ligase complex catalytic complex membrane-bounded organelle intracellular organelle intracellular anatomical structure organelle peroxisome microbody cytoplasm cellular anatomical entity intracellular membrane-bounded organelle cytosol GID complex protein-containing complex ubiquitin ligase complex catalytic complex transferase complex intracellular protein-containing complex nucleus
B [auth i]	Protein FYV10	aminoacyltransferase activity ubiquitin-like protein transferase activity catalytic activity, acting on a protein acyltransferase activity ubiquitin-like protein ligase activity ubiquitin protein ligase activity transferase activity catalytic activity ubiquitin-protein transferase activity cation binding ion binding binding metal ion binding small molecule binding	regulation of biological process regulation of cellular process negative regulation of programmed cell death regulation of apoptotic process biological regulation negative regulation of biological process regulation of programmed cell death cell death negative regulation of apoptotic process negative regulation of cellular process cellular process apoptotic process programmed cell death monosaccharide metabolic process regulation of biological process regulation of cellular process negative regulation of programmed cell death regulation of apoptotic process biological regulation negative regulation of biological process regulation of programmed cell death cell death negative regulation of apoptotic process negative regulation of cellular process cellular process apoptotic process programmed cell death monosaccharide metabolic process negative regulation of small molecule metabolic process cellular biosynthetic process gluconeogenesis negative regulation of cellular metabolic process regulation of primary metabolic process organic substance metabolic process negative regulation of gluconeogenesis regulation of small molecule metabolic process organic substance biosynthetic process small molecule metabolic process regulation of carbohydrate metabolic process regulation of glucose metabolic process negative regulation of carbohydrate metabolic process regulation of biosynthetic process carbohydrate metabolic process small molecule biosynthetic process negative regulation of metabolic process carbohydrate biosynthetic process cellular metabolic process hexose metabolic process primary metabolic process monosaccharide biosynthetic process regulation of cellular metabolic process negative regulation of cellular biosynthetic process regulation of cellular biosynthetic process hexose biosynthetic process biosynthetic process negative regulation of biosynthetic process regulation of gluconeogenesis metabolic process regulation of carbohydrate biosynthetic process regulation of metabolic process glucose metabolic process organonitrogen compound metabolic process protein ubiquitination macromolecule modification protein metabolic process macromolecule metabolic process post-translational protein modification protein modification process protein modification by small protein conjugation protein modification by small protein conjugation or removal organonitrogen compound catabolic process catabolic process proteolysis involved in protein catabolic process proteasomal protein catabolic process protein catabolic process proteasome-mediated ubiquitin-dependent protein catabolic process macromolecule catabolic process modification-dependent macromolecule catabolic process modification-dependent protein catabolic process proteolysis ubiquitin-dependent protein catabolic process organic substance catabolic process	GID complex protein-containing complex ubiquitin ligase complex catalytic complex transferase complex intracellular protein-containing complex intracellular anatomical structure cytoplasm cellular anatomical entity membrane-bounded organelle intracellular organelle organelle nucleus intracellular membrane-bounded organelle

InterPro: Protein Family Classification InterPro Database Homepage

Chains	Accession	Name	Type
A [auth b]	IPR044063	Gid-type RING finger domain	Domain
A [auth b]	IPR013083	Zinc finger, RING/FYVE/PHD-type	Homologous Superfamily
A [auth b]	IPR024964	CTLH/CRA C-terminal to LisH motif domain	Domain
A [auth b]	IPR006595	CTLH, C-terminal LisH motif	Domain
A [auth b]	IPR037683	Rmd5, degenerated RING (dRING) finger	Domain
A [auth b]	IPR045098	Fyv10 family	Family
B [auth i]	IPR044063	Gid-type RING finger domain	Domain
B [auth i]	IPR024964	CTLH/CRA C-terminal to LisH motif domain	Domain
B [auth i]	IPR006595	CTLH, C-terminal LisH motif	Domain
B [auth i]	IPR045098	Fyv10 family	Family

RCSB PDB Core Operations are funded by the U.S. National Science Foundation (DBI-2321666), the US Department of Energy (DE-SC0019749), and the National Cancer Institute, National Institute of Allergy and Infectious Diseases, and National Institute of General Medical Sciences of the National Institutes of Health under grant R01GM133198.