7MDU
BG505 SOSIP MD39 in complex with the monoclonal antibodies Rh.33104 mAb.1 and RM20A3
Domain Annotation: SCOP2 Classification SCOP2 Database Homepage
Chains | Type | Family Name | Domain Identifier | Family Identifier | Provenance Source (Version) |
---|---|---|---|---|---|
B [auth A] | SCOP2B Superfamily | gp120 core | 8080371 | 3001390 | SCOP2B (2022-06-29) |
F [auth B] | SCOP2B Superfamily | Virus ectodomain | 8085614 | 3001628 | SCOP2B (2022-06-29) |
Domain Annotation: ECOD Classification ECOD Database Homepage
Chains | Family Name | Domain Identifier | Architecture | Possible Homology | Homology | Topology | Family | Provenance Source (Version) |
---|---|---|---|---|---|---|---|---|
A [auth H] | V-set_8 | e7mduH1 | A: beta sandwiches | X: Immunoglobulin-like beta-sandwich | H: Immunoglobulin-related | T: Immunoglobulin/Fibronectin type III/E set domains/PapD-like | F: V-set_8 | ECOD (1.6) |
B [auth A] | GP120_2nd | e7mduA3 | A: beta barrels | X: V1/V2 domain in HIV gp120 (From Topology) | H: V1/V2 domain in HIV gp120 (From Topology) | T: V1/V2 domain in HIV gp120 | F: GP120_2nd | ECOD (1.6) |
B [auth A] | GP120_3rd | e7mduA1 | A: a+b two layers | X: Ribosomal protein L31e-like | H: Ribosomal protein L31e/gp120 outer domain (From Topology) | T: Ribosomal protein L31e/gp120 outer domain | F: GP120_3rd | ECOD (1.6) |
B [auth A] | GP120_1st | e7mduA2 | A: a+b two layers | X: gp120 inner domain (From Topology) | H: gp120 inner domain (From Topology) | T: gp120 inner domain | F: GP120_1st | ECOD (1.6) |
C [auth E] | V-set_12 | e7mduE1 | A: beta sandwiches | X: Immunoglobulin-like beta-sandwich | H: Immunoglobulin-related | T: Immunoglobulin/Fibronectin type III/E set domains/PapD-like | F: V-set_12 | ECOD (1.6) |
D [auth F] | V-set_3 | e7mduF1 | A: beta sandwiches | X: Immunoglobulin-like beta-sandwich | H: Immunoglobulin-related | T: Immunoglobulin/Fibronectin type III/E set domains/PapD-like | F: V-set_3 | ECOD (1.6) |
E [auth L] | V-set | e7mduL1 | A: beta sandwiches | X: Immunoglobulin-like beta-sandwich | H: Immunoglobulin-related | T: Immunoglobulin/Fibronectin type III/E set domains/PapD-like | F: V-set | ECOD (1.6) |
F [auth B] | GP41_1st | e7mduB1 | A: a+b duplicates or obligate multimers | X: MPER trimer (From Topology) | H: MPER trimer (From Topology) | T: MPER trimer | F: GP41_1st | ECOD (1.6) |
SAbDab Antibody Annotation SAbDab Database Homepage
Chain | Chain Class | Chain Subclass | Chain Type | Antigen Name(s) | Provenance Source |
---|---|---|---|---|---|
A [auth H] | Heavy Chain | IGHV4 | - | surface protein gp120 | SAbDab (2024-08-30) |
C [auth E] | Heavy Chain | IGHV3 | - | surface protein gp120 | transmembrane protein gp41 | SAbDab (2024-08-30) |
D [auth F] | Light Chain | IGLV2 | Lambda | surface protein gp120 | transmembrane protein gp41 | SAbDab (2024-08-30) |
E [auth L] | Light Chain | IGKV1 | Kappa | surface protein gp120 | SAbDab (2024-08-30) |
Protein Family Annotation Pfam Database Homepage
Chains | Accession | Name | Description | Comments | Source |
---|---|---|---|---|---|
B [auth A] | PF00516 | Envelope glycoprotein GP120 (GP120) | Envelope glycoprotein GP120 | - | Family |
F [auth B] | PF00517 | Retroviral envelope protein (GP41) | Retroviral envelope protein | - | Family |
Gene Ontology: Gene Product Annotation Gene Ontology Database Homepage
InterPro: Protein Family Classification InterPro Database Homepage
Chains | Accession | Name | Type |
---|---|---|---|
B [auth A] | IPR000777 | Human immunodeficiency virus 1, envelope glycoprotein Gp120 | Domain |
B [auth A] | IPR036377 | Gp120 core superfamily | Homologous Superfamily |
B [auth A] | IPR000328 | Retroviral envelope protein GP41-like | Domain |
B [auth A] | IPR037527 | Envelope glycoprotein Gp160 | Family |
F [auth B] | IPR000777 | Human immunodeficiency virus 1, envelope glycoprotein Gp120 | Domain |
F [auth B] | IPR036377 | Gp120 core superfamily | Homologous Superfamily |
F [auth B] | IPR000328 | Retroviral envelope protein GP41-like | Domain |
F [auth B] | IPR037527 | Envelope glycoprotein Gp160 | Family |