7ZLI
Cryo-EM structure of C-mannosyltransferase CeDPY19, in complex with Dol25-P-Man and bound to CMT2-Fab and anti-Fab nanobody
Domain Annotation: ECOD Classification ECOD Database Homepage
Chains | Family Name | Domain Identifier | Architecture | Possible Homology | Homology | Topology | Family | Provenance Source (Version) |
---|---|---|---|---|---|---|---|---|
A [auth H] | C1-set_1 | e7zliH1 | A: beta sandwiches | X: Immunoglobulin-like beta-sandwich | H: Immunoglobulin-related | T: Immunoglobulin/Fibronectin type III/E set domains/PapD-like | F: C1-set_1 | ECOD (1.6) |
A [auth H] | V-set_12 | e7zliH2 | A: beta sandwiches | X: Immunoglobulin-like beta-sandwich | H: Immunoglobulin-related | T: Immunoglobulin/Fibronectin type III/E set domains/PapD-like | F: V-set_12 | ECOD (1.6) |
B [auth K] | V-set_12 | e7zliK1 | A: beta sandwiches | X: Immunoglobulin-like beta-sandwich | H: Immunoglobulin-related | T: Immunoglobulin/Fibronectin type III/E set domains/PapD-like | F: V-set_12 | ECOD (1.6) |
C [auth L] | C1-set_4 | e7zliL2 | A: beta sandwiches | X: Immunoglobulin-like beta-sandwich | H: Immunoglobulin-related | T: Immunoglobulin/Fibronectin type III/E set domains/PapD-like | F: C1-set_4 | ECOD (1.6) |
C [auth L] | V-set | e7zliL1 | A: beta sandwiches | X: Immunoglobulin-like beta-sandwich | H: Immunoglobulin-related | T: Immunoglobulin/Fibronectin type III/E set domains/PapD-like | F: V-set | ECOD (1.6) |
SAbDab Antibody Annotation SAbDab Database Homepage
Chain | Chain Class | Chain Subclass | Chain Type | Antigen Name(s) | Provenance Source |
---|---|---|---|---|---|
A [auth H] | Heavy Chain | IGHV3 | - | c-mannosyltransferase dpy-19 | SAbDab (2024-09-13) |
B [auth K] | Heavy Chain | IGHV1 | - | - | SAbDab (2024-09-13) |
C [auth L] | Light Chain | IGKV1 | Kappa | c-mannosyltransferase dpy-19 | SAbDab (2024-09-13) |
Protein Family Annotation Pfam Database Homepage
Chains | Accession | Name | Description | Comments | Source |
---|---|---|---|---|---|
C [auth L] | PF07686 | Immunoglobulin V-set domain (V-set) | Immunoglobulin V-set domain | This domain is found in antibodies as well as neural protein P0 and CTL4 amongst others. | Domain |
C [auth L] | PF07654 | Immunoglobulin C1-set domain (C1-set) | Immunoglobulin C1-set domain | - | Domain |
D [auth A] | PF10034 | Q-cell neuroblast polarisation (Dpy19) | Q-cell neuroblast polarisation | - | Family |
Gene Ontology: Gene Product Annotation Gene Ontology Database Homepage
InterPro: Protein Family Classification InterPro Database Homepage
Chains | Accession | Name | Type |
---|---|---|---|
C [auth L] | IPR003597 | Immunoglobulin C1-set | Domain |
C [auth L] | IPR050150 | Immunoglobulin Variable Light Chain | Family |
C [auth L] | IPR013783 | Immunoglobulin-like fold | Homologous Superfamily |
C [auth L] | IPR036179 | Immunoglobulin-like domain superfamily | Homologous Superfamily |
C [auth L] | IPR013106 | Immunoglobulin V-set domain | Domain |
C [auth L] | IPR003599 | Immunoglobulin domain subtype | Domain |
C [auth L] | IPR007110 | Immunoglobulin-like domain | Domain |
C [auth L] | IPR003006 | Immunoglobulin/major histocompatibility complex, conserved site | Conserved Site |
D [auth A] | IPR011330 | Glycoside hydrolase/deacetylase, beta/alpha-barrel | Homologous Superfamily |
D [auth A] | IPR047462 | C-mannosyltransferase Dpy19 | Family |
D [auth A] | IPR018732 | Dpy-19/Dpy-19-like | Family |
Membrane Protein Annotation: OPM OPM Database Homepage
Chains | External Link | Type | Class | Superfamily | Family |
---|---|---|---|---|---|
OPM | Transmembrane | Alpha-helical polytopic | Glycosyl transferase GT-C superfamily | C-mannosyltransferase Dpy19-like |
Membrane Protein Annotation: PDBTM PDBTM Database Homepage
Chains | External Link | Comment |
---|---|---|
PDBTM | Annotated as membrane protein by PDBTM |