7ZJ3
Structure of TRIM2 RING domain in complex with UBE2D1~Ub conjugate
Domain Annotation: SCOP2 Classification SCOP2 Database Homepage
Chains | Type | Family Name | Domain Identifier | Family Identifier | Provenance Source (Version) |
---|---|---|---|---|---|
B [auth E] | SCOP2B Superfamily | UBC-like | 8059970 | 3000570 | SCOP2B (2022-06-29) |
E [auth H] | SCOP2B Superfamily | UBC-like | 8059970 | 3000570 | SCOP2B (2022-06-29) |
H [auth K] | SCOP2B Superfamily | UBC-like | 8059970 | 3000570 | SCOP2B (2022-06-29) |
L [auth B] | SCOP2B Superfamily | UBC-like | 8059970 | 3000570 | SCOP2B (2022-06-29) |
C [auth F] | SCOP2B Superfamily | Ubiquitin-like | 8043829 | 3000157 | SCOP2B (2022-06-29) |
F [auth I] | SCOP2B Superfamily | Ubiquitin-like | 8043829 | 3000157 | SCOP2B (2022-06-29) |
I [auth L] | SCOP2B Superfamily | Ubiquitin-like | 8043829 | 3000157 | SCOP2B (2022-06-29) |
K [auth C] | SCOP2B Superfamily | Ubiquitin-like | 8043829 | 3000157 | SCOP2B (2022-06-29) |
Domain Annotation: ECOD Classification ECOD Database Homepage
Chains | Family Name | Domain Identifier | Architecture | Possible Homology | Homology | Topology | Family | Provenance Source (Version) |
---|---|---|---|---|---|---|---|---|
A [auth D] | zf-C3HC4_4 | e7zj3D1 | A: few secondary structure elements | X: RING/U-box-like | H: RING/U-box-like | T: RING/U-box | F: zf-C3HC4_4 | ECOD (1.6) |
D [auth G] | zf-C3HC4_4 | e7zj3G1 | A: few secondary structure elements | X: RING/U-box-like | H: RING/U-box-like | T: RING/U-box | F: zf-C3HC4_4 | ECOD (1.6) |
G [auth J] | zf-C3HC4_4 | e7zj3J1 | A: few secondary structure elements | X: RING/U-box-like | H: RING/U-box-like | T: RING/U-box | F: zf-C3HC4_4 | ECOD (1.6) |
J [auth A] | zf-C3HC4_4 | e7zj3A1 | A: few secondary structure elements | X: RING/U-box-like | H: RING/U-box-like | T: RING/U-box | F: zf-C3HC4_4 | ECOD (1.6) |
B [auth E] | UQ_con | e7zj3E1 | A: a+b two layers | X: UBC-like | H: UBC-like (From Topology) | T: UBC-like | F: UQ_con | ECOD (1.6) |
E [auth H] | UQ_con | e7zj3H1 | A: a+b two layers | X: UBC-like | H: UBC-like (From Topology) | T: UBC-like | F: UQ_con | ECOD (1.6) |
H [auth K] | UQ_con | e7zj3K1 | A: a+b two layers | X: UBC-like | H: UBC-like (From Topology) | T: UBC-like | F: UQ_con | ECOD (1.6) |
L [auth B] | UQ_con | e7zj3B1 | A: a+b two layers | X: UBC-like | H: UBC-like (From Topology) | T: UBC-like | F: UQ_con | ECOD (1.6) |
C [auth F] | ubiquitin_1 | e7zj3F1 | A: a+b two layers | X: beta-Grasp | H: Ubiquitin-related | T: Ubiquitin-like | F: ubiquitin_1 | ECOD (1.6) |
F [auth I] | ubiquitin | e7zj3I1 | A: a+b two layers | X: beta-Grasp | H: Ubiquitin-related | T: Ubiquitin-like | F: ubiquitin | ECOD (1.6) |
I [auth L] | ubiquitin_1 | e7zj3L1 | A: a+b two layers | X: beta-Grasp | H: Ubiquitin-related | T: Ubiquitin-like | F: ubiquitin_1 | ECOD (1.6) |
K [auth C] | ubiquitin_1 | e7zj3C1 | A: a+b two layers | X: beta-Grasp | H: Ubiquitin-related | T: Ubiquitin-like | F: ubiquitin_1 | ECOD (1.6) |
Protein Family Annotation Pfam Database Homepage
Chains | Accession | Name | Description | Comments | Source |
---|---|---|---|---|---|
A [auth D], D [auth G], G [auth J], J [auth A] | PF13445 | RING-type zinc-finger (zf-RING_UBOX) | RING-type zinc-finger | This zinc-finger is a typical RING-type of plant ubiquitin ligases [1]. | Domain |
B [auth E], E [auth H], H [auth K], L [auth B] | PF00179 | Ubiquitin-conjugating enzyme (UQ_con) | Ubiquitin-conjugating enzyme | Proteins destined for proteasome-mediated degradation may be ubiquitinated. Ubiquitination follows conjugation of ubiquitin to a conserved cysteine residue of UBC homologues. TSG101 is one of several UBC homologues that lacks this active site cystein ... | Domain |
C [auth F], F [auth I], I [auth L], K [auth C] | PF00240 | Ubiquitin family (ubiquitin) | Ubiquitin family | This family contains a number of ubiquitin-like proteins: SUMO (smt3 homologue) (see Swiss:Q02724), Nedd8 (see Swiss:P29595), Elongin B (see Swiss:Q15370), Rub1 (see Swiss:Q9SHE7), and Parkin (see Swiss:O60260). A number of them are thought to carry ... | Domain |