Annotations: 7ZE3

PucD-LH2 complex from Rps. palustris

External Resource: Annotation

Domain Annotation: ECOD Classification
Gene Ontology: Gene Product Annotation
InterPro: Protein Family Classification
Membrane Protein Annotation: OPM
Membrane Protein Annotation: PDBTM
Membrane Protein Annotation: MemProtMD
Protein Modification Annotation

Domain Annotation: ECOD Classification ECOD Database Homepage

Chains	Family Name	Domain Identifier	Architecture	Possible Homology	Homology	Topology	Family	Provenance Source (Version)
B	Ank+TRP_2+Ank_2	e7ze3B1	A: beta barrels	X: RNase A-like	H: Cytochrome P450	T: Cytochrome P450	F: Ank+TRP_2+Ank_2	ECOD (v294.2)
G [auth F]	Ank+TRP_2+Ank_2	e7ze3F1	A: beta barrels	X: RNase A-like	H: Cytochrome P450	T: Cytochrome P450	F: Ank+TRP_2+Ank_2	ECOD (v294.2)
I [auth H]	Ank+TRP_2+Ank_2	e7ze3H1	A: beta barrels	X: RNase A-like	H: Cytochrome P450	T: Cytochrome P450	F: Ank+TRP_2+Ank_2	ECOD (v294.2)
Q [auth P]	Ank+TRP_2+Ank_2	e7ze3P1	A: beta barrels	X: RNase A-like	H: Cytochrome P450	T: Cytochrome P450	F: Ank+TRP_2+Ank_2	ECOD (v294.2)
S [auth R]	Ank+TRP_2+Ank_2	e7ze3R1	A: beta barrels	X: RNase A-like	H: Cytochrome P450	T: Cytochrome P450	F: Ank+TRP_2+Ank_2	ECOD (v294.2)
O [auth N]	Ank+TRP_2+Ank_2	e7ze3N1	A: beta barrels	X: RNase A-like	H: Cytochrome P450	T: Cytochrome P450	F: Ank+TRP_2+Ank_2	ECOD (v294.2)
M [auth L]	Ank+TRP_2+Ank_2	e7ze3L1	A: beta barrels	X: RNase A-like	H: Cytochrome P450	T: Cytochrome P450	F: Ank+TRP_2+Ank_2	ECOD (v294.2)
K [auth J]	Ank+TRP_2+Ank_2	e7ze3J1	A: beta barrels	X: RNase A-like	H: Cytochrome P450	T: Cytochrome P450	F: Ank+TRP_2+Ank_2	ECOD (v294.2)
E [auth D]	Ank+TRP_2+Ank_2	e7ze3D1	A: beta barrels	X: RNase A-like	H: Cytochrome P450	T: Cytochrome P450	F: Ank+TRP_2+Ank_2	ECOD (v294.2)
A	Ribosomal_S28e	e7ze3A1	A: beta barrels	X: RNase A-like	H: Cytochrome P450	T: Cytochrome P450	F: Ribosomal_S28e	ECOD (v294.2)
L [auth K]	Ank+TRP_2+Ank_2	e7ze3K1	A: beta barrels	X: RNase A-like	H: Cytochrome P450	T: Cytochrome P450	F: Ank+TRP_2+Ank_2	ECOD (v294.2)
R [auth Q]	Ank+TRP_2+Ank_2	e7ze3Q1	A: beta barrels	X: RNase A-like	H: Cytochrome P450	T: Cytochrome P450	F: Ank+TRP_2+Ank_2	ECOD (v294.2)
P [auth O]	Ank+TRP_2+Ank_2	e7ze3O1	A: beta barrels	X: RNase A-like	H: Cytochrome P450	T: Cytochrome P450	F: Ank+TRP_2+Ank_2	ECOD (v294.2)
N [auth M]	Ank+TRP_2+Ank_2	e7ze3M1	A: beta barrels	X: RNase A-like	H: Cytochrome P450	T: Cytochrome P450	F: Ank+TRP_2+Ank_2	ECOD (v294.2)
J [auth I]	Ank+TRP_2+Ank_2	e7ze3I1	A: beta barrels	X: RNase A-like	H: Cytochrome P450	T: Cytochrome P450	F: Ank+TRP_2+Ank_2	ECOD (v294.2)
H [auth G]	Ank+TRP_2+Ank_2	e7ze3G1	A: beta barrels	X: RNase A-like	H: Cytochrome P450	T: Cytochrome P450	F: Ank+TRP_2+Ank_2	ECOD (v294.2)
F [auth E]	Ank+TRP_2+Ank_2	e7ze3E1	A: beta barrels	X: RNase A-like	H: Cytochrome P450	T: Cytochrome P450	F: Ank+TRP_2+Ank_2	ECOD (v294.2)
D [auth C]	Ank+TRP_2+Ank_2	e7ze3C1	A: beta barrels	X: RNase A-like	H: Cytochrome P450	T: Cytochrome P450	F: Ank+TRP_2+Ank_2	ECOD (v294.2)

Gene Ontology: Gene Product Annotation Gene Ontology Database Homepage

Chains	Polymer	Molecular Function	Biological Process	Cellular Component
C [auth S]	PucA-LH2-gamma	-	-	-
B, E [auth D], G [auth F], I [auth H], K [auth J], B, E [auth D], G [auth F], I [auth H], K [auth J], M [auth L], O [auth N], Q [auth P], S [auth R]	Light-harvesting protein B-800-850 beta chain	chlorophyll binding binding bacteriochlorophyll binding tetrapyrrole binding cation binding ion binding metal ion binding small molecule binding	photosynthesis photosynthesis, light reaction metabolic process cellular process generation of precursor metabolites and energy	cell periphery cellular anatomical structure plasma membrane membrane membrane-bounded organelle plasma membrane light-harvesting complex protein-containing complex intracellular anatomical structure intracellular vesicle plasma membrane-derived chromatophore light-harvesting complex intracellular membrane-bounded organelle intracellular organelle cytoplasmic vesicle cell periphery cellular anatomical structure plasma membrane membrane membrane-bounded organelle plasma membrane light-harvesting complex protein-containing complex intracellular anatomical structure intracellular vesicle plasma membrane-derived chromatophore light-harvesting complex intracellular membrane-bounded organelle intracellular organelle cytoplasmic vesicle organelle cytoplasm vesicle
A, D [auth C], F [auth E], H [auth G], J [auth I], A, D [auth C], F [auth E], H [auth G], J [auth I], L [auth K], N [auth M], P [auth O], R [auth Q]	Light-harvesting protein B-800-850 alpha chain	chlorophyll binding binding bacteriochlorophyll binding tetrapyrrole binding cation binding ion binding metal ion binding small molecule binding	photosynthesis photosynthesis, light reaction metabolic process cellular process generation of precursor metabolites and energy	membrane-bounded organelle intracellular organelle organelle envelope organelle inner membrane cellular anatomical structure intracellular anatomical structure organelle membrane organelle membrane cell periphery plasma membrane plasma membrane light-harvesting complex protein-containing complex intracellular vesicle membrane-bounded organelle intracellular organelle organelle envelope organelle inner membrane cellular anatomical structure intracellular anatomical structure organelle membrane organelle membrane cell periphery plasma membrane plasma membrane light-harvesting complex protein-containing complex intracellular vesicle plasma membrane-derived chromatophore light-harvesting complex intracellular membrane-bounded organelle cytoplasmic vesicle cytoplasm vesicle

InterPro: Protein Family Classification InterPro Database Homepage

Chains	Accession	Name	Type
B, E [auth D], G [auth F], I [auth H], K [auth J], B, E [auth D], G [auth F], I [auth H], K [auth J], M [auth L], O [auth N], Q [auth P], S [auth R]	IPR000066	Antenna complex, alpha/beta subunit	Domain
B, E [auth D], G [auth F], I [auth H], K [auth J], B, E [auth D], G [auth F], I [auth H], K [auth J], M [auth L], O [auth N], Q [auth P], S [auth R]	IPR023624	Antenna complex, beta domain superfamily	Homologous Superfamily
B, E [auth D], G [auth F], I [auth H], K [auth J], B, E [auth D], G [auth F], I [auth H], K [auth J], M [auth L], O [auth N], Q [auth P], S [auth R]	IPR035889	Light-harvesting complex	Homologous Superfamily
B, E [auth D], G [auth F], I [auth H], K [auth J], B, E [auth D], G [auth F], I [auth H], K [auth J], M [auth L], O [auth N], Q [auth P], S [auth R]	IPR023623	Antenna complex, beta subunit, conserved site	Conserved Site
B, E [auth D], G [auth F], I [auth H], K [auth J], B, E [auth D], G [auth F], I [auth H], K [auth J], M [auth L], O [auth N], Q [auth P], S [auth R]	IPR002362	Light-harvesting protein B beta chain	Family
A, D [auth C], F [auth E], H [auth G], J [auth I], A, D [auth C], F [auth E], H [auth G], J [auth I], L [auth K], N [auth M], P [auth O], R [auth Q]	IPR000066	Antenna complex, alpha/beta subunit	Domain
A, D [auth C], F [auth E], H [auth G], J [auth I], A, D [auth C], F [auth E], H [auth G], J [auth I], L [auth K], N [auth M], P [auth O], R [auth Q]	IPR018332	Antenna complex, alpha subunit	Family
A, D [auth C], F [auth E], H [auth G], J [auth I], A, D [auth C], F [auth E], H [auth G], J [auth I], L [auth K], N [auth M], P [auth O], R [auth Q]	IPR002361	Antenna complex, alpha subunit conserved site	Conserved Site
A, D [auth C], F [auth E], H [auth G], J [auth I], A, D [auth C], F [auth E], H [auth G], J [auth I], L [auth K], N [auth M], P [auth O], R [auth Q]	IPR035889	Light-harvesting complex	Homologous Superfamily

Membrane Protein Annotation: OPM OPM Database Homepage

Chains	External Link	Type	Class	Superfamily	Family
A, B, D [auth C], E [auth D], F [auth E] A, B, D [auth C], E [auth D], F [auth E], G [auth F], H [auth G], I [auth H], J [auth I], K [auth J], L [auth K], M [auth L], N [auth M], O [auth N], P [auth O], Q [auth P], R [auth Q], S [auth R]	OPM	Transmembrane	Alpha-helical polytopic	Photosystems	Light-harvesting complexes from bacteria

Membrane Protein Annotation: PDBTM PDBTM Database Homepage

Chains	External Link	Comment
A, B, D [auth C], E [auth D], F [auth E] A, B, D [auth C], E [auth D], F [auth E], G [auth F], H [auth G], I [auth H], J [auth I], K [auth J], L [auth K], M [auth L], N [auth M], O [auth N], P [auth O], Q [auth P], R [auth Q], S [auth R]	PDBTM	Annotated as membrane protein by PDBTM

Membrane Protein Annotation: MemProtMD MemProtMD Database Homepage

Chains	External Link	Comment
A, B, D [auth C], E [auth D], F [auth E] A, B, D [auth C], E [auth D], F [auth E], G [auth F], H [auth G], I [auth H], J [auth I], K [auth J], L [auth K], M [auth L], N [auth M], O [auth N], P [auth O], Q [auth P], R [auth Q], S [auth R]	MemProtMD	Annotated as membrane protein by MemProtMD

Protein Modification Annotation

Modified Residue(s)
Chain	Residue(s)	Description
A, D [auth C], F [auth E], H [auth G], J [auth I], A, D [auth C], F [auth E], H [auth G], J [auth I], L [auth K], N [auth M], P [auth O], R [auth Q]	CXM	Parent Component: MET : AA0363 , AA0493 : N-carboxy-L-methionine MOD:00368 , N-(dihydroxymethyl)-L-methionine (fMet) MOD:01446 , N-(dihydroxymethyl)-L-methionine (Met) MOD:01447

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RCSB PDB Core Operations are funded by the U.S. National Science Foundation (DBI-2321666), the US Department of Energy (DE-SC0019749), and the National Cancer Institute, National Institute of Allergy and Infectious Diseases, and National Institute of General Medical Sciences of the National Institutes of Health under grant R01GM157729. RCSB PDB uses resources of the National Energy Research Scientific Computing Center (NERSC), a Department of Energy User Facility.