Annotations: 7ZC1

Subtomogram averaging of Rubisco from Cyanobium carboxysome

External Resource: Annotation

Domain Annotation: ECOD Classification
Domain Annotation: CATH
Protein Family Annotation
Gene Ontology: Gene Product Annotation
InterPro: Protein Family Classification

Domain Annotation: ECOD Classification ECOD Database Homepage

Chains	Family Name	Domain Identifier	Architecture	Possible Homology	Homology	Topology	Family	Provenance Source (Version)
O [auth V]	Glycos_transf_N	e7zc1V1	A: alpha arrays	X: cradle loop barrel	H: RIFT-related	T: FMN-binding split barrel	F: Glycos_transf_N	ECOD (v295.2)
M [auth S]	Glycos_transf_N	e7zc1S1	A: alpha arrays	X: cradle loop barrel	H: RIFT-related	T: FMN-binding split barrel	F: Glycos_transf_N	ECOD (v295.2)
K [auth P]	Glycos_transf_N	e7zc1P1	A: alpha arrays	X: cradle loop barrel	H: RIFT-related	T: FMN-binding split barrel	F: Glycos_transf_N	ECOD (v295.2)
I [auth M]	Glycos_transf_N	e7zc1M1	A: alpha arrays	X: cradle loop barrel	H: RIFT-related	T: FMN-binding split barrel	F: Glycos_transf_N	ECOD (v295.2)
G [auth J]	Glycos_transf_N	e7zc1J1	A: alpha arrays	X: cradle loop barrel	H: RIFT-related	T: FMN-binding split barrel	F: Glycos_transf_N	ECOD (v295.2)
E [auth G]	Glycos_transf_N	e7zc1G1	A: alpha arrays	X: cradle loop barrel	H: RIFT-related	T: FMN-binding split barrel	F: Glycos_transf_N	ECOD (v295.2)
C [auth D]	Glycos_transf_N	e7zc1D1	A: alpha arrays	X: cradle loop barrel	H: RIFT-related	T: FMN-binding split barrel	F: Glycos_transf_N	ECOD (v295.2)
A	Glycos_transf_N	e7zc1A1	A: alpha arrays	X: cradle loop barrel	H: RIFT-related	T: FMN-binding split barrel	F: Glycos_transf_N	ECOD (v295.2)
P [auth W]	Glycos_transf_N	e7zc1W1	A: alpha arrays	X: cradle loop barrel	H: RIFT-related	T: FMN-binding split barrel	F: Glycos_transf_N	ECOD (v295.2)
N [auth T]	Glycos_transf_N	e7zc1T1	A: alpha arrays	X: cradle loop barrel	H: RIFT-related	T: FMN-binding split barrel	F: Glycos_transf_N	ECOD (v295.2)
L [auth Q]	Glycos_transf_N	e7zc1Q1	A: alpha arrays	X: cradle loop barrel	H: RIFT-related	T: FMN-binding split barrel	F: Glycos_transf_N	ECOD (v295.2)
J [auth N]	Glycos_transf_N	e7zc1N1	A: alpha arrays	X: cradle loop barrel	H: RIFT-related	T: FMN-binding split barrel	F: Glycos_transf_N	ECOD (v295.2)
H [auth K]	Glycos_transf_N	e7zc1K1	A: alpha arrays	X: cradle loop barrel	H: RIFT-related	T: FMN-binding split barrel	F: Glycos_transf_N	ECOD (v295.2)
F [auth H]	Glycos_transf_N	e7zc1H1	A: alpha arrays	X: cradle loop barrel	H: RIFT-related	T: FMN-binding split barrel	F: Glycos_transf_N	ECOD (v295.2)
D [auth E]	Glycos_transf_N	e7zc1E1	A: alpha arrays	X: cradle loop barrel	H: RIFT-related	T: FMN-binding split barrel	F: Glycos_transf_N	ECOD (v295.2)
B	Glycos_transf_N	e7zc1B1	A: alpha arrays	X: cradle loop barrel	H: RIFT-related	T: FMN-binding split barrel	F: Glycos_transf_N	ECOD (v295.2)

Domain Annotation: CATH CATH Database Homepage

Chain	Domain	Class	Architecture	Topology	Homology	Provenance Source (Version)
O [auth V]	3.30.70.150	Alpha Beta	2-Layer Sandwich	Alpha-Beta Plaits	RuBisCO large subunit, N-terminal domain	CATH (utative)
O [auth V]	3.20.20.110	Alpha Beta	Alpha-Beta Barrel	TIM Barrel	Ribulose bisphosphate carboxylase, large subunit, C-terminal domain	CATH (utative)
M [auth S]	3.30.70.150	Alpha Beta	2-Layer Sandwich	Alpha-Beta Plaits	RuBisCO large subunit, N-terminal domain	CATH (utative)
M [auth S]	3.20.20.110	Alpha Beta	Alpha-Beta Barrel	TIM Barrel	Ribulose bisphosphate carboxylase, large subunit, C-terminal domain	CATH (utative)
K [auth P]	3.30.70.150	Alpha Beta	2-Layer Sandwich	Alpha-Beta Plaits	RuBisCO large subunit, N-terminal domain	CATH (utative)
K [auth P]	3.20.20.110	Alpha Beta	Alpha-Beta Barrel	TIM Barrel	Ribulose bisphosphate carboxylase, large subunit, C-terminal domain	CATH (utative)
I [auth M]	3.30.70.150	Alpha Beta	2-Layer Sandwich	Alpha-Beta Plaits	RuBisCO large subunit, N-terminal domain	CATH (utative)
I [auth M]	3.20.20.110	Alpha Beta	Alpha-Beta Barrel	TIM Barrel	Ribulose bisphosphate carboxylase, large subunit, C-terminal domain	CATH (utative)
G [auth J]	3.30.70.150	Alpha Beta	2-Layer Sandwich	Alpha-Beta Plaits	RuBisCO large subunit, N-terminal domain	CATH (utative)
G [auth J]	3.20.20.110	Alpha Beta	Alpha-Beta Barrel	TIM Barrel	Ribulose bisphosphate carboxylase, large subunit, C-terminal domain	CATH (utative)
E [auth G]	3.30.70.150	Alpha Beta	2-Layer Sandwich	Alpha-Beta Plaits	RuBisCO large subunit, N-terminal domain	CATH (utative)
E [auth G]	3.20.20.110	Alpha Beta	Alpha-Beta Barrel	TIM Barrel	Ribulose bisphosphate carboxylase, large subunit, C-terminal domain	CATH (utative)
C [auth D]	3.30.70.150	Alpha Beta	2-Layer Sandwich	Alpha-Beta Plaits	RuBisCO large subunit, N-terminal domain	CATH (utative)
C [auth D]	3.20.20.110	Alpha Beta	Alpha-Beta Barrel	TIM Barrel	Ribulose bisphosphate carboxylase, large subunit, C-terminal domain	CATH (utative)
A	3.30.70.150	Alpha Beta	2-Layer Sandwich	Alpha-Beta Plaits	RuBisCO large subunit, N-terminal domain	CATH (utative)
A	3.20.20.110	Alpha Beta	Alpha-Beta Barrel	TIM Barrel	Ribulose bisphosphate carboxylase, large subunit, C-terminal domain	CATH (utative)

Protein Family Annotation Pfam Database Homepage

Chains	Accession	Name	Description	Comments	Source
A, C [auth D], E [auth G], G [auth J], I [auth M], A, C [auth D], E [auth G], G [auth J], I [auth M], K [auth P], M [auth S], O [auth V]	PF02788	Ribulose bisphosphate carboxylase large chain, N-terminal domain (RuBisCO_large_N)	Ribulose bisphosphate carboxylase large chain, N-terminal domain	The N-terminal domain of RuBisCO large chain adopts a ferredoxin-like fold.	Domain
A, C [auth D], E [auth G], G [auth J], I [auth M], A, C [auth D], E [auth G], G [auth J], I [auth M], K [auth P], M [auth S], O [auth V]	PF00016	Ribulose bisphosphate carboxylase large chain, catalytic domain (RuBisCO_large)	Ribulose bisphosphate carboxylase large chain, catalytic domain	The C-terminal domain of RuBisCO large chain is the catalytic domain adopting a TIM barrel fold.	Domain

Gene Ontology: Gene Product Annotation Gene Ontology Database Homepage

Chains	Polymer	Molecular Function	Biological Process	Cellular Component
A, C [auth D], E [auth G], G [auth J], I [auth M], A, C [auth D], E [auth G], G [auth J], I [auth M], K [auth P], M [auth S], O [auth V]	Ribulose bisphosphate carboxylase large chain	cation binding magnesium ion binding ion binding binding metal ion binding small molecule binding ribulose-bisphosphate carboxylase activity carboxy-lyase activity lyase activity catalytic activity carbon-carbon lyase activity	carbohydrate metabolic process biosynthetic process photosynthesis reductive pentose-phosphate cycle carbohydrate biosynthetic process photosynthesis, dark reaction primary metabolic process metabolic process cellular process carbon fixation	intracellular organelle bacterial microcompartment cellular anatomical structure intracellular anatomical structure organelle carboxysome membraneless organelle intracellular membraneless organelle
B, D [auth E], F [auth H], H [auth K], J [auth N], B, D [auth E], F [auth H], H [auth K], J [auth N], L [auth Q], N [auth T], P [auth W]	Ribulose bisphosphate carboxylase, small subunit	ribulose-bisphosphate carboxylase activity carboxy-lyase activity lyase activity catalytic activity carbon-carbon lyase activity	carbohydrate metabolic process biosynthetic process photosynthesis reductive pentose-phosphate cycle carbohydrate biosynthetic process photosynthesis, dark reaction primary metabolic process metabolic process cellular process carbon fixation	intracellular organelle bacterial microcompartment cellular anatomical structure intracellular anatomical structure organelle carboxysome membraneless organelle intracellular membraneless organelle

InterPro: Protein Family Classification InterPro Database Homepage

Chains	Accession	Name	Type
A, C [auth D], E [auth G], G [auth J], I [auth M], A, C [auth D], E [auth G], G [auth J], I [auth M], K [auth P], M [auth S], O [auth V]	IPR020888	Ribulose bisphosphate carboxylase large subunit, type I	Family
A, C [auth D], E [auth G], G [auth J], I [auth M], A, C [auth D], E [auth G], G [auth J], I [auth M], K [auth P], M [auth S], O [auth V]	IPR036376	Ribulose bisphosphate carboxylase, large subunit, C-terminal domain superfamily	Homologous Superfamily
A, C [auth D], E [auth G], G [auth J], I [auth M], A, C [auth D], E [auth G], G [auth J], I [auth M], K [auth P], M [auth S], O [auth V]	IPR020878	Ribulose bisphosphate carboxylase, large chain, active site	Active Site
A, C [auth D], E [auth G], G [auth J], I [auth M], A, C [auth D], E [auth G], G [auth J], I [auth M], K [auth P], M [auth S], O [auth V]	IPR000685	Ribulose bisphosphate carboxylase, large subunit, C-terminal	Domain
A, C [auth D], E [auth G], G [auth J], I [auth M], A, C [auth D], E [auth G], G [auth J], I [auth M], K [auth P], M [auth S], O [auth V]	IPR033966	RuBisCO	Family
A, C [auth D], E [auth G], G [auth J], I [auth M], A, C [auth D], E [auth G], G [auth J], I [auth M], K [auth P], M [auth S], O [auth V]	IPR036422	RuBisCO large subunit, N-terminal domain superfamily	Homologous Superfamily
A, C [auth D], E [auth G], G [auth J], I [auth M], A, C [auth D], E [auth G], G [auth J], I [auth M], K [auth P], M [auth S], O [auth V]	IPR017443	Ribulose bisphosphate carboxylase, large subunit, ferrodoxin-like N-terminal	Domain
B, D [auth E], F [auth H], H [auth K], J [auth N], B, D [auth E], F [auth H], H [auth K], J [auth N], L [auth Q], N [auth T], P [auth W]	IPR036385	Ribulose bisphosphate carboxylase, small subunit superfamily	Homologous Superfamily
B, D [auth E], F [auth H], H [auth K], J [auth N], B, D [auth E], F [auth H], H [auth K], J [auth N], L [auth Q], N [auth T], P [auth W]	IPR024681	Ribulose bisphosphate carboxylase, small subunit	Family
B, D [auth E], F [auth H], H [auth K], J [auth N], B, D [auth E], F [auth H], H [auth K], J [auth N], L [auth Q], N [auth T], P [auth W]	IPR000894	Ribulose bisphosphate carboxylase small subunit, domain	Domain

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RCSB PDB Core Operations are funded by the U.S. National Science Foundation (DBI-2321666), the US Department of Energy (DE-SC0019749), and the National Cancer Institute, National Institute of Allergy and Infectious Diseases, and National Institute of General Medical Sciences of the National Institutes of Health under grant R01GM157729. RCSB PDB uses resources of the National Energy Research Scientific Computing Center (NERSC), a Department of Energy User Facility.