Domain Annotation: SCOP2 Classification SCOP2 Database Homepage

ChainsTypeFamily Name Domain Identifier Family IdentifierProvenance Source (Version)
M [auth N]SCOP2B SuperfamilyTudor/PWWP/MBT domain-like 8041640 3000404 SCOP2B (2022-06-29)
M [auth N]SCOP2B SuperfamilyTudor/PWWP/MBT domain-like 8041642 3000404 SCOP2B (2022-06-29)
ASCOP2B SuperfamilyCore histone-like 8039340 3001387 SCOP2B (2022-06-29)
ESCOP2B SuperfamilyCore histone-like 8039340 3001387 SCOP2B (2022-06-29)
BSCOP2B SuperfamilyCore histone-like 8070545 3001387 SCOP2B (2022-06-29)
FSCOP2B SuperfamilyCore histone-like 8070545 3001387 SCOP2B (2022-06-29)
DSCOP2B SuperfamilyCore histone-like 8039341 3001387 SCOP2B (2022-06-29)
HSCOP2B SuperfamilyCore histone-like 8039341 3001387 SCOP2B (2022-06-29)
K [auth O]SCOP2B SuperfamilyUbiquitin-like 8101457 3000157 SCOP2B (2022-06-29)

Domain Annotation: ECOD Classification ECOD Database Homepage

ChainsFamily NameDomain Identifier ArchitecturePossible HomologyHomologyTopologyFamilyProvenance Source (Version)
M [auth N]53-BP1_Tudor_Ce7yqkN1 A: beta barrelsX: SH3H: SH3T: SH3F: 53-BP1_Tudor_CECOD (1.6)
M [auth N]53-BP1_Tudor_Ne7yqkN2 A: beta barrelsX: SH3H: SH3T: SH3F: 53-BP1_Tudor_NECOD (1.6)
AHistonee7yqkA1 A: alpha arraysX: Histone-likeH: Histone-relatedT: HistoneF: HistoneECOD (1.6)
EHistonee7yqkE1 A: alpha arraysX: Histone-likeH: Histone-relatedT: HistoneF: HistoneECOD (1.6)
BHistone_1e7yqkB1 A: alpha arraysX: Histone-likeH: Histone-relatedT: HistoneF: Histone_1ECOD (1.6)
FHistone_1e7yqkF1 A: alpha arraysX: Histone-likeH: Histone-relatedT: HistoneF: Histone_1ECOD (1.6)
CHistone_1e7yqkC1 A: alpha arraysX: Histone-likeH: Histone-relatedT: HistoneF: Histone_1ECOD (1.6)
GHistone_1e7yqkG1 A: alpha arraysX: Histone-likeH: Histone-relatedT: HistoneF: Histone_1ECOD (1.6)
DHistonee7yqkD1 A: alpha arraysX: Histone-likeH: Histone-relatedT: HistoneF: HistoneECOD (1.6)
HHistonee7yqkH1 A: alpha arraysX: Histone-likeH: Histone-relatedT: HistoneF: HistoneECOD (1.6)
K [auth O]ubiquitin_1e7yqkO1 A: a+b two layersX: beta-GraspH: Ubiquitin-relatedT: Ubiquitin-likeF: ubiquitin_1ECOD (1.6)

Protein Family Annotation Pfam Database Homepage

ChainsAccessionNameDescriptionCommentsSource
M [auth N]PF09038Tumour suppressor p53-binding protein-1 Tudor (53-BP1_Tudor)Tumour suppressor p53-binding protein-1 TudorMembers of this family consist of ten beta-strands and a carboxy-terminal alpha-helix. The amino-terminal five beta-strands and the C-terminal five beta-strands adopt folds that are identical to each other. This domain is essential for the recruitmen ...Members of this family consist of ten beta-strands and a carboxy-terminal alpha-helix. The amino-terminal five beta-strands and the C-terminal five beta-strands adopt folds that are identical to each other. This domain is essential for the recruitment of proteins to double stranded breaks in DNA, which is mediated by interaction with methylated Lys 79 of histone H3 [1].
Domain
A, E
PF00125Core histone H2A/H2B/H3/H4 (Histone)Core histone H2A/H2B/H3/H4- Domain
B, F
PF15511Centromere kinetochore component CENP-T histone fold (CENP-T_C)Centromere kinetochore component CENP-T histone foldCENP-T is a family of vertebral kinetochore proteins that associates directly with CENP-W. The N-terminus of CENP-T proteins interacts directly with the Ndc80 complex in the outer kinetochore. Importantly, the CENP-T-W complex does not directly asso ...CENP-T is a family of vertebral kinetochore proteins that associates directly with CENP-W. The N-terminus of CENP-T proteins interacts directly with the Ndc80 complex in the outer kinetochore. Importantly, the CENP-T-W complex does not directly associate with CENP-A, but with histone H3 in the centromere region. CENP-T and -W form a hetero-tetramer with CENP-S and -X and bind to a ~100 bp region of nucleosome-free DNA forming a nucleosome-like structure. The DNA-CENP-T-W-S-X complex is likely to be associated with histone H3-containing nucleosomes rather than with CENP-nucleosomes. This domain is the C-terminal histone fold domain of CENP-T, which associates with chromatin [2-3].
Domain
C, G
PF16211C-terminus of histone H2A (Histone_H2A_C)C-terminus of histone H2A- Family
C, G
PF00125Core histone H2A/H2B/H3/H4 (Histone)Core histone H2A/H2B/H3/H4- Domain
D, H
PF00125Core histone H2A/H2B/H3/H4 (Histone)Core histone H2A/H2B/H3/H4- Domain
K [auth O]PF00240Ubiquitin family (ubiquitin)Ubiquitin familyThis family contains a number of ubiquitin-like proteins: SUMO (smt3 homologue) (see Swiss:Q02724), Nedd8 (see Swiss:P29595), Elongin B (see Swiss:Q15370), Rub1 (see Swiss:Q9SHE7), and Parkin (see Swiss:O60260). A number of them are thought to carry ...This family contains a number of ubiquitin-like proteins: SUMO (smt3 homologue) (see Swiss:Q02724), Nedd8 (see Swiss:P29595), Elongin B (see Swiss:Q15370), Rub1 (see Swiss:Q9SHE7), and Parkin (see Swiss:O60260). A number of them are thought to carry a distinctive five-residue motif termed the proteasome-interacting motif (PIM), which may have a biologically significant role in protein delivery to proteasomes and recruitment of proteasomes to transcription sites [5].
Domain

Gene Ontology: Gene Product Annotation Gene Ontology Database Homepage

ChainsPolymerMolecular FunctionBiological ProcessCellular Component
L [auth K]UDR motif of 53BP1
M [auth N]TP53-binding protein 1
A, E
Histone H3.1
B, F
Histone H4
C, G
Histone H2AX
D, H
Histone H2B
DNA (145-MER)---
DNA (145-MER)---
K [auth O]Polyubiquitin-B

InterPro: Protein Family Classification InterPro Database Homepage

ChainsAccessionNameType
L [auth K]IPR047252TP53-binding protein 1-likeFamily
L [auth K]IPR014722Large ribosomal subunit protein uL2, domain 2Homologous Superfamily
L [auth K]IPR001357BRCT domainDomain
L [auth K]IPR036420BRCT domain superfamilyHomologous Superfamily
L [auth K]IPR047249TP53-binding protein 1-like, first BRCT domainDomain
L [auth K]IPR047250TP53-binding protein 1-like, second BRCT domainDomain
L [auth K]IPR015125Tumour suppressor p53-binding protein-1 Tudor domainDomain
M [auth N]IPR047252TP53-binding protein 1-likeFamily
M [auth N]IPR014722Large ribosomal subunit protein uL2, domain 2Homologous Superfamily
M [auth N]IPR001357BRCT domainDomain
M [auth N]IPR036420BRCT domain superfamilyHomologous Superfamily
M [auth N]IPR047249TP53-binding protein 1-like, first BRCT domainDomain
M [auth N]IPR047250TP53-binding protein 1-like, second BRCT domainDomain
M [auth N]IPR015125Tumour suppressor p53-binding protein-1 Tudor domainDomain
A, E
IPR009072Histone-foldHomologous Superfamily
A, E
IPR007125Histone H2A/H2B/H3Domain
A, E
IPR000164Histone H3/CENP-AFamily
B, F
IPR009072Histone-foldHomologous Superfamily
B, F
IPR035425CENP-T/Histone H4, histone foldDomain
B, F
IPR001951Histone H4Family
B, F
IPR019809Histone H4, conserved siteConserved Site
B, F
IPR004823TATA box binding protein associated factor (TAF), histone-like fold domainDomain
C, G
IPR002119Histone H2AFamily
C, G
IPR032454Histone H2A, C-terminal domainDomain
C, G
IPR032458Histone H2A conserved siteConserved Site
C, G
IPR009072Histone-foldHomologous Superfamily
C, G
IPR007125Histone H2A/H2B/H3Domain
D, H
IPR009072Histone-foldHomologous Superfamily
D, H
IPR007125Histone H2A/H2B/H3Domain
D, H
IPR000558Histone H2BFamily
K [auth O]IPR019954Ubiquitin conserved siteConserved Site
K [auth O]IPR050158Ubiquitin and ubiquitin-likeFamily
K [auth O]IPR000626Ubiquitin-like domainDomain
K [auth O]IPR019956Ubiquitin domainDomain
K [auth O]IPR029071Ubiquitin-like domain superfamilyHomologous Superfamily

Pharos: Disease Associations Pharos Homepage Annotation

ChainsDrug Target  Associated Disease
L [auth K]PharosQ12888
M [auth N]PharosQ12888
A, E
PharosP68431
B, F
PharosP62805
C, G
PharosP16104
D, H
PharosO60814
K [auth O]PharosP0CG47