7YIX

The Cryo-EM Structure of Human Tissue Nonspecific Alkaline Phosphatase and Single-Chain Fragment Variable (ScFv) Complex.

External Resource: Annotation

Domain Annotation: ECOD Classification
Protein Family Annotation
Gene Ontology: Gene Product Annotation
InterPro: Protein Family Classification

Domain Annotation: ECOD Classification ECOD Database Homepage

Chains	Family Name	Domain Identifier	Architecture	Possible Homology	Homology	Topology	Family	Provenance Source (Version)
A	PF00245	e7yixA1	A: a/b three-layered sandwiches	X: Alkaline phosphatase-like (From Topology)	H: Alkaline phosphatase-like (From Topology)	T: Alkaline phosphatase-like	F: PF00245	ECOD (1.6)
B	PF00245	e7yixB1	A: a/b three-layered sandwiches	X: Alkaline phosphatase-like (From Topology)	H: Alkaline phosphatase-like (From Topology)	T: Alkaline phosphatase-like	F: PF00245	ECOD (1.6)
C	PF07686	e7yixC1	A: beta sandwiches	X: Immunoglobulin-like beta-sandwich	H: Immunoglobulin-related	T: Immunoglobulin/Fibronectin type III/E set domains/PapD-like	F: PF07686	ECOD (1.6)
D	PF07686	e7yixD2	A: beta sandwiches	X: Immunoglobulin-like beta-sandwich	H: Immunoglobulin-related	T: Immunoglobulin/Fibronectin type III/E set domains/PapD-like	F: PF07686	ECOD (1.6)

Protein Family Annotation Pfam Database Homepage

Chains	Accession	Name	Description	Comments	Source
A, B	PF00245	Alkaline phosphatase (Alk_phosphatase)	Alkaline phosphatase	-	Domain

Gene Ontology: Gene Product Annotation Gene Ontology Database Homepage

Chains	Polymer	Molecular Function	Biological Process	Cellular Component
A, B	Alkaline phosphatase, tissue-nonspecific isozyme	cation binding ion binding binding calcium ion binding metal ion binding small molecule binding phosphoric ester hydrolase activity phosphoethanolamine phosphatase activity hydrolase activity, acting on ester bonds phosphatase activity hydrolase activity catalytic activity pyrophosphatase activity hydrolase activity, acting on acid anhydrides, in phosphorus-containing anhydrides cation binding ion binding binding calcium ion binding metal ion binding small molecule binding phosphoric ester hydrolase activity phosphoethanolamine phosphatase activity hydrolase activity, acting on ester bonds phosphatase activity hydrolase activity catalytic activity pyrophosphatase activity hydrolase activity, acting on acid anhydrides, in phosphorus-containing anhydrides inorganic diphosphate phosphatase activity hydrolase activity, acting on acid anhydrides hydrolase activity, acting on acid phosphorus-nitrogen bonds phosphoamidase activity nucleoside diphosphate phosphatase activity ADP phosphatase activity pyridoxal phosphatase activity ATP hydrolysis activity ribonucleoside triphosphate phosphatase activity ATP-dependent activity alkaline phosphatase activity	cellular homeostasis homeostatic process developmental process multicellular organismal process cellular developmental process ossification cell differentiation cellular process osteoblast differentiation bone mineralization animal organ development anatomical structure development biomineral tissue development tissue development cellular homeostasis homeostatic process developmental process multicellular organismal process cellular developmental process ossification cell differentiation cellular process osteoblast differentiation bone mineralization animal organ development anatomical structure development biomineral tissue development tissue development multicellular organism development skeletal system development system development response to stimulus response to chemical response to antibiotic phosphate ion homeostasis inorganic ion homeostasis chemical homeostasis endochondral ossification replacement ossification endochondral bone morphogenesis anatomical structure morphogenesis skeletal system morphogenesis animal organ morphogenesis bone morphogenesis bone development multicellular organismal-level homeostasis inhibition of non-skeletal tissue mineralization anatomical structure homeostasis tissue homeostasis response to corticosteroid response to lipid response to hormone response to steroid hormone response to endogenous stimulus response to glucocorticoid response to organic cyclic compound response to nutrient levels response to organonitrogen compound response to nutrient response to oxygen-containing compound response to vitamin B6 response to nitrogen compound response to vitamin regulation of biological process biological regulation positive regulation of biological process adaptive thermogenesis positive regulation of metabolic process regulation of cold-induced thermogenesis cold-induced thermogenesis temperature homeostasis positive regulation of cold-induced thermogenesis positive regulation of multicellular organismal process metabolic process regulation of multicellular organismal process regulation of metabolic process monoatomic ion homeostasis calcium ion homeostasis monoatomic cation homeostasis response to peptide hormone response to insulin response to vitamin D cementum mineralization tooth mineralization odontogenesis futile creatine cycle reproductive process developmental process involved in reproduction organonitrogen compound metabolic process cellular metabolic process organic hydroxy compound metabolic process vitamin metabolic process organophosphate metabolic process cellular aldehyde metabolic process phosphate-containing compound metabolic process pyridine-containing compound metabolic process vitamin B6 metabolic process small molecule metabolic process phosphorus metabolic process water-soluble vitamin metabolic process pyridoxal phosphate metabolic process response to peptide response to cytokine response to macrophage colony-stimulating factor response to sodium phosphate response to salt dephosphorylation biological process involved in interspecies interaction between organisms response to other organism response to external stimulus response to lipopolysaccharide response to biotic stimulus response to bacterium response to external biotic stimulus response to molecule of bacterial origin cellular response to stimulus cellular response to chemical stimulus cellular response to organic cyclic compound	membrane cellular anatomical entity extracellular exosome membrane-bounded organelle extracellular vesicle extracellular organelle extracellular region organelle extracellular space vesicle extracellular membrane-bounded organelle mitochondrial membrane intracellular anatomical structure mitochondrion membrane cellular anatomical entity extracellular exosome membrane-bounded organelle extracellular vesicle extracellular organelle extracellular region organelle extracellular space vesicle extracellular membrane-bounded organelle mitochondrial membrane intracellular anatomical structure mitochondrion intracellular membrane-bounded organelle intracellular organelle organelle envelope mitochondrial envelope cytoplasm organelle membrane cell periphery plasma membrane extracellular matrix external encapsulating structure side of membrane mitochondrial intermembrane space membrane-enclosed lumen intracellular organelle lumen organelle envelope lumen organelle lumen
C, D	scFv	-	-	-

InterPro: Protein Family Classification InterPro Database Homepage

Chains	Accession	Name	Type
A, B	IPR001952	Alkaline phosphatase	Family
A, B	IPR017850	Alkaline-phosphatase-like, core domain superfamily	Homologous Superfamily
A, B	IPR018299	Alkaline phosphatase, active site	Active Site

RCSB PDB Core Operations are funded by the U.S. National Science Foundation (DBI-2321666), the US Department of Energy (DE-SC0019749), and the National Cancer Institute, National Institute of Allergy and Infectious Diseases, and National Institute of General Medical Sciences of the National Institutes of Health under grant R01GM133198.